Wall clock time and date at job start Mon Mar 30 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 N 1.46498 * 109.46578 * 240.00208 * 2 1 3 5 5 C 1.46495 * 120.00258 * 54.54262 * 4 2 1 6 6 C 1.50695 * 109.47368 * 89.99685 * 5 4 2 7 7 H 1.07995 * 120.00490 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00312 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99707 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47326 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47044 * 119.99844 * 10 8 6 13 13 H 1.48506 * 109.47094 * 239.99719 * 10 8 6 14 14 C 1.38367 * 119.99876 * 234.53132 * 4 2 1 15 15 C 1.39933 * 119.99599 * 349.61933 * 14 4 2 16 16 N 1.31424 * 120.01841 * 179.70421 * 15 14 4 17 17 C 1.33320 * 120.00740 * 0.56181 * 16 15 14 18 18 C 1.47697 * 120.00620 * 179.72906 * 17 16 15 19 19 O 1.21478 * 119.99888 * 179.97438 * 18 17 16 20 20 O 1.34733 * 120.00186 * 359.97438 * 18 17 16 21 21 C 1.39464 * 119.99196 * 359.70917 * 17 16 15 22 22 N 1.32044 * 119.97618 * 0.02562 * 21 17 16 23 23 H 1.09001 * 109.47410 * 56.37136 * 1 2 3 24 24 H 1.08999 * 109.47659 * 176.37339 * 1 2 3 25 25 H 1.09003 * 109.46926 * 296.37383 * 1 2 3 26 26 H 1.08995 * 109.47037 * 120.00595 * 2 1 3 27 27 H 1.09004 * 109.46885 * 63.61131 * 3 2 1 28 28 H 1.08997 * 109.47004 * 183.61152 * 3 2 1 29 29 H 1.09001 * 109.47426 * 303.61135 * 3 2 1 30 30 H 1.09008 * 109.46782 * 209.99513 * 5 4 2 31 31 H 1.08996 * 109.46942 * 329.98931 * 5 4 2 32 32 H 0.96998 * 120.00179 * 180.02562 * 9 8 6 33 33 H 1.08004 * 119.98571 * 359.97438 * 15 14 4 34 34 H 0.96699 * 117.00258 * 180.02562 * 20 18 17 35 35 H 1.07995 * 120.01346 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 1.5684 -0.2636 -2.5234 6 6 2.5053 0.7895 -3.0566 7 1 3.3509 1.1092 -2.4658 8 6 2.2822 1.3458 -4.2984 9 7 1.2521 0.9570 -5.0177 10 14 3.4431 2.6517 -4.9590 11 1 4.5142 2.9111 -3.9637 12 1 4.0505 2.1776 -6.2284 13 1 2.6870 3.9050 -5.2098 14 6 2.9043 -1.7460 -1.0725 15 6 3.5021 -2.0164 0.1635 16 7 4.3393 -3.0224 0.2829 17 6 4.6281 -3.7788 -0.7763 18 6 5.5736 -4.9057 -0.6434 19 8 5.8363 -5.5951 -1.6085 20 8 6.1448 -5.1689 0.5481 21 6 4.0369 -3.5062 -2.0096 22 7 3.1918 -2.4986 -2.1278 23 1 -0.3634 0.5691 -0.8557 24 1 -0.3634 -1.0256 -0.0650 25 1 -0.3633 0.4565 0.9207 26 1 1.8933 -0.5139 0.8899 27 1 1.7304 1.9373 0.9206 28 1 3.1280 1.4431 -0.0647 29 1 1.6248 1.9747 -0.8558 30 1 1.5626 -1.1198 -3.1980 31 1 0.5620 0.1485 -2.4508 32 1 1.0954 1.3480 -5.8914 33 1 3.2719 -1.4009 1.0206 34 1 6.7573 -5.9163 0.5858 35 1 4.2709 -4.1185 -2.8679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230076858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:36 Heat of formation + Delta-G solvation = -35.172005 kcal Electronic energy + Delta-G solvation = -20013.845048 eV Core-core repulsion = 16819.387331 eV Total energy + Delta-G solvation = -3194.457717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87066 -39.55622 -37.50181 -35.91746 -33.98773 -32.95453 -32.01504 -30.03673 -27.45854 -26.92947 -24.59861 -24.47016 -22.43254 -21.82961 -19.73901 -18.25316 -17.51425 -16.98633 -16.74925 -16.47066 -15.61322 -14.97429 -14.64516 -14.47658 -14.04156 -13.88152 -13.29141 -13.19286 -12.81747 -12.43913 -11.91358 -11.76272 -11.50164 -11.43775 -11.27490 -11.08357 -10.97813 -10.87571 -10.77455 -10.63774 -10.46714 -10.18162 -9.92043 -9.34141 -8.67559 -8.54725 -7.22103 -6.16010 -4.22260 0.90921 1.54805 2.74348 3.08471 3.21131 3.29998 3.31515 3.40172 4.18335 4.33061 4.47880 4.74432 4.79232 5.10524 5.17249 5.32420 5.36978 5.41832 5.61177 5.82029 5.85463 5.97180 6.06189 6.21987 6.37110 6.48992 6.54370 6.74056 6.83602 7.27250 7.47040 7.59832 7.78309 7.92200 8.06157 8.12918 8.34321 8.81399 9.42444 10.90403 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005963 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.615099 B = 4694.396072 C = 5573.161985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.548 5.548 5 C 0.241 3.759 6 C -0.526 4.526 7 H 0.059 0.941 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.402 3.598 15 C -0.030 4.030 16 N -0.355 5.355 17 C -0.091 4.091 18 C 0.559 3.441 19 O -0.526 6.526 20 O -0.501 6.501 21 C 0.192 3.808 22 N -0.495 5.495 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.168 0.832 34 H 0.405 0.595 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -4.723 11.289 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.250 5.250 5 C 0.122 3.878 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.158 3.842 15 C -0.207 4.207 16 N -0.070 5.070 17 C -0.229 4.229 18 C 0.403 3.597 19 O -0.415 6.415 20 O -0.310 6.310 21 C 0.026 3.974 22 N -0.217 5.217 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.262 0.738 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.391 -4.353 10.778 11.707 hybrid contribution 1.052 0.321 -0.538 1.224 sum 2.443 -4.032 10.239 11.273 Atomic orbital electron populations 1.22159 0.94527 1.02407 1.02805 1.21202 0.94638 0.93994 0.86877 1.22181 1.01823 0.95238 1.02445 1.47570 1.40736 1.26887 1.09809 1.19571 0.95430 0.96548 0.76262 1.21411 1.11516 1.21349 1.02202 0.92271 1.24897 0.95442 0.97012 0.96449 1.69926 1.28090 1.42810 1.12123 0.86486 0.80873 0.81264 0.79090 1.19830 1.20828 1.20908 1.19795 0.87211 0.87001 0.90220 1.23152 1.00181 0.99683 0.97665 1.68023 1.08073 1.01001 1.29909 1.20188 1.07837 1.01782 0.93083 1.20207 0.77597 0.81945 0.79907 1.90876 1.61563 1.49494 1.39573 1.84709 1.58209 1.52874 1.35203 1.23490 0.87112 0.90741 0.96044 1.68437 1.17514 1.06158 1.29554 0.90921 0.92575 0.91650 0.90079 0.92600 0.92434 0.90013 0.92733 0.94261 0.92634 0.81563 0.73755 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 8.96 37.16 0.33 -1.82 16 2 C 0.14 2.02 3.11 -67.93 -0.21 1.81 16 3 C -0.16 -2.35 8.50 37.16 0.32 -2.04 16 4 N -0.55 -10.41 2.49 -167.47 -0.42 -10.83 16 5 C 0.24 5.61 4.86 -5.20 -0.03 5.59 16 6 C -0.53 -13.49 7.97 -34.44 -0.27 -13.76 16 7 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 10 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 C 0.40 7.66 7.34 -155.02 -1.14 6.52 16 15 C -0.03 -0.49 10.39 -17.09 -0.18 -0.67 16 16 N -0.35 -6.12 10.26 -9.45 -0.10 -6.22 16 17 C -0.09 -1.57 6.74 -82.90 -0.56 -2.13 16 18 C 0.56 8.72 8.31 34.59 0.29 9.01 16 19 O -0.53 -8.92 17.12 -19.25 -0.33 -9.24 16 20 O -0.50 -6.31 13.25 -40.58 -0.54 -6.84 16 21 C 0.19 3.44 10.76 -17.00 -0.18 3.25 16 22 N -0.50 -10.10 9.21 -11.94 -0.11 -10.21 16 23 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.00 5.49 -51.93 -0.29 0.71 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.43 7.18 -51.93 -0.37 1.06 16 30 H 0.05 1.43 7.25 -51.92 -0.38 1.06 16 31 H 0.04 0.94 6.23 -51.93 -0.32 0.62 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.17 2.24 5.96 -52.48 -0.31 1.93 16 34 H 0.41 2.86 9.11 45.56 0.42 3.27 16 35 H 0.17 2.76 7.63 -52.49 -0.40 2.36 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -30.88 302.89 -6.17 -37.04 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.23 Total: 2.65 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.73 Total: 7.39 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.11 Total: -51.34 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.87 Total: -16.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.88 -6.17 -37.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230076858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.873 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds