Wall clock time and date at job start Mon Mar 30 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 N 1.46498 * 109.46578 * 240.00208 * 2 1 3 5 5 C 1.46495 * 120.00258 * 54.54262 * 4 2 1 6 6 C 1.50695 * 109.47368 * 89.99685 * 5 4 2 7 7 H 1.07995 * 120.00490 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00312 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99707 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47326 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47044 * 119.99844 * 10 8 6 13 13 H 1.48506 * 109.47094 * 239.99719 * 10 8 6 14 14 C 1.38367 * 119.99876 * 234.53132 * 4 2 1 15 15 C 1.39933 * 119.99599 * 349.61933 * 14 4 2 16 16 N 1.31424 * 120.01841 * 179.70421 * 15 14 4 17 17 C 1.33320 * 120.00740 * 0.56181 * 16 15 14 18 18 C 1.47697 * 120.00620 * 179.72906 * 17 16 15 19 19 O 1.21478 * 119.99888 * 179.97438 * 18 17 16 20 20 O 1.34733 * 120.00186 * 359.97438 * 18 17 16 21 21 C 1.39464 * 119.99196 * 359.70917 * 17 16 15 22 22 N 1.32044 * 119.97618 * 0.02562 * 21 17 16 23 23 H 1.09001 * 109.47410 * 56.37136 * 1 2 3 24 24 H 1.08999 * 109.47659 * 176.37339 * 1 2 3 25 25 H 1.09003 * 109.46926 * 296.37383 * 1 2 3 26 26 H 1.08995 * 109.47037 * 120.00595 * 2 1 3 27 27 H 1.09004 * 109.46885 * 63.61131 * 3 2 1 28 28 H 1.08997 * 109.47004 * 183.61152 * 3 2 1 29 29 H 1.09001 * 109.47426 * 303.61135 * 3 2 1 30 30 H 1.09008 * 109.46782 * 209.99513 * 5 4 2 31 31 H 1.08996 * 109.46942 * 329.98931 * 5 4 2 32 32 H 0.96998 * 120.00179 * 180.02562 * 9 8 6 33 33 H 1.08004 * 119.98571 * 359.97438 * 15 14 4 34 34 H 0.96699 * 117.00258 * 180.02562 * 20 18 17 35 35 H 1.07995 * 120.01346 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 1.5684 -0.2636 -2.5234 6 6 2.5053 0.7895 -3.0566 7 1 3.3509 1.1092 -2.4658 8 6 2.2822 1.3458 -4.2984 9 7 1.2521 0.9570 -5.0177 10 14 3.4431 2.6517 -4.9590 11 1 4.5142 2.9111 -3.9637 12 1 4.0505 2.1776 -6.2284 13 1 2.6870 3.9050 -5.2098 14 6 2.9043 -1.7460 -1.0725 15 6 3.5021 -2.0164 0.1635 16 7 4.3393 -3.0224 0.2829 17 6 4.6281 -3.7788 -0.7763 18 6 5.5736 -4.9057 -0.6434 19 8 5.8363 -5.5951 -1.6085 20 8 6.1448 -5.1689 0.5481 21 6 4.0369 -3.5062 -2.0096 22 7 3.1918 -2.4986 -2.1278 23 1 -0.3634 0.5691 -0.8557 24 1 -0.3634 -1.0256 -0.0650 25 1 -0.3633 0.4565 0.9207 26 1 1.8933 -0.5139 0.8899 27 1 1.7304 1.9373 0.9206 28 1 3.1280 1.4431 -0.0647 29 1 1.6248 1.9747 -0.8558 30 1 1.5626 -1.1198 -3.1980 31 1 0.5620 0.1485 -2.4508 32 1 1.0954 1.3480 -5.8914 33 1 3.2719 -1.4009 1.0206 34 1 6.7573 -5.9163 0.5858 35 1 4.2709 -4.1185 -2.8679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230076858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:36 Heat of formation + Delta-G solvation = -56.061833 kcal Electronic energy + Delta-G solvation = -20014.750899 eV Core-core repulsion = 16819.387331 eV Total energy + Delta-G solvation = -3195.363568 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23141 -40.78932 -38.87105 -37.06177 -35.36625 -34.90669 -33.32739 -31.57987 -29.16180 -28.06431 -26.12552 -25.89374 -24.07172 -23.07876 -21.07665 -19.51176 -18.85742 -18.58796 -18.22064 -18.00473 -16.86595 -16.64787 -16.09691 -15.90594 -15.33195 -15.23439 -14.67805 -14.59926 -14.13085 -13.98778 -13.41094 -13.16491 -12.89011 -12.84074 -12.67331 -12.60041 -12.48474 -12.35563 -12.19036 -12.11487 -11.98596 -11.66790 -11.49639 -10.98243 -10.59867 -10.07203 -8.73277 -8.14675 -6.30673 -0.45710 0.18190 1.35781 1.38902 1.45833 1.49002 1.84191 2.10499 2.39112 2.82362 3.11759 3.22908 3.36109 3.43337 3.94634 4.02847 4.20032 4.24985 4.44713 4.58159 4.77645 4.85630 4.89204 5.02661 5.09941 5.15000 5.30290 5.42500 5.50910 5.55276 5.69991 5.94614 6.09249 6.17553 6.49083 6.77248 6.95312 7.06585 7.37427 8.87251 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.005963 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.615099 B = 4694.396072 C = 5573.161985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 C -0.153 4.153 4 N -0.556 5.556 5 C 0.261 3.739 6 C -0.523 4.523 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.954 3.046 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.385 3.615 15 C -0.013 4.013 16 N -0.359 5.359 17 C -0.092 4.092 18 C 0.568 3.432 19 O -0.542 6.542 20 O -0.493 6.493 21 C 0.183 3.817 22 N -0.536 5.536 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.018 0.982 31 H 0.029 0.971 32 H 0.265 0.735 33 H 0.203 0.797 34 H 0.431 0.569 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -4.571 13.673 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 C -0.211 4.211 4 N -0.260 5.260 5 C 0.140 3.860 6 C -0.562 4.562 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.566 5.566 10 Si 0.779 3.221 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.141 3.859 15 C -0.189 4.189 16 N -0.074 5.074 17 C -0.229 4.229 18 C 0.412 3.588 19 O -0.433 6.433 20 O -0.305 6.305 21 C 0.018 3.982 22 N -0.258 5.258 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.293 0.707 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.386 -4.238 13.209 14.076 hybrid contribution 0.803 0.179 -1.183 1.441 sum 3.189 -4.059 12.026 13.087 Atomic orbital electron populations 1.22122 0.93595 1.02138 1.03440 1.21581 0.95454 0.93915 0.86263 1.22119 1.00782 0.95246 1.02912 1.47486 1.41407 1.27690 1.09392 1.18946 0.94548 0.94293 0.78181 1.21625 1.11262 1.21299 1.02043 0.92905 1.25642 0.96808 0.99022 0.96960 1.70032 1.29733 1.44258 1.12529 0.85574 0.79129 0.79211 0.78138 1.19427 1.21152 1.19997 1.20116 0.87660 0.87036 0.91053 1.23585 0.98663 0.99247 0.97449 1.68135 1.08348 1.01247 1.29643 1.20433 1.07609 1.02058 0.92793 1.19865 0.77305 0.81242 0.80400 1.90877 1.62112 1.49943 1.40391 1.84636 1.58464 1.54171 1.33277 1.23643 0.87007 0.90499 0.97006 1.68356 1.18795 1.07431 1.31252 0.93695 0.92832 0.87969 0.86575 0.88689 0.93613 0.93441 0.96428 0.95353 0.92628 0.78058 0.70729 0.79983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 8.96 71.98 0.65 -3.26 16 2 C 0.13 3.58 3.11 44.99 0.14 3.72 16 3 C -0.15 -4.25 8.50 71.98 0.61 -3.63 16 4 N -0.56 -21.06 2.49 -683.75 -1.70 -22.76 16 5 C 0.26 12.62 4.86 85.63 0.42 13.04 16 6 C -0.52 -27.45 7.97 25.60 0.20 -27.25 16 7 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 8 C 0.01 0.80 5.46 84.66 0.46 1.27 16 9 N -0.93 -53.04 13.29 21.45 0.28 -52.76 16 10 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.39 14.47 7.34 133.36 0.98 15.45 16 15 C -0.01 -0.39 10.39 85.16 0.89 0.50 16 16 N -0.36 -11.54 10.26 -183.82 -1.89 -13.43 16 17 C -0.09 -3.03 6.74 41.71 0.28 -2.75 16 18 C 0.57 16.63 8.31 70.32 0.58 17.22 16 19 O -0.54 -17.63 17.12 19.91 0.34 -17.29 16 20 O -0.49 -10.98 13.25 -56.43 -0.75 -11.73 16 21 C 0.18 6.54 10.76 84.96 0.91 7.46 16 22 N -0.54 -22.22 9.21 -191.69 -1.77 -23.99 16 23 H 0.04 1.38 6.69 -2.39 -0.02 1.36 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.12 2.38 5.49 -2.39 -0.01 2.37 16 27 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.64 7.18 -2.39 -0.02 1.63 16 30 H 0.02 0.98 7.25 -2.38 -0.02 0.96 16 31 H 0.03 1.43 6.23 -2.39 -0.01 1.41 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.20 4.57 5.96 -2.91 -0.02 4.56 16 34 H 0.43 4.67 9.11 -74.06 -0.67 4.00 16 35 H 0.18 5.91 7.63 -2.91 -0.02 5.89 16 Total: -1.00 -68.02 302.89 3.13 -64.89 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.46 Total: 10.13 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.12 Total: 21.75 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -5.07 Total: -112.93 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.41 Total: -29.02 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.02 3.13 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230076858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.824 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds