Wall clock time and date at job start Mon Mar 30 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46991 * 2 1 4 4 C 1.46503 * 120.00318 * 85.04739 * 3 2 1 5 5 C 1.50695 * 109.47223 * 96.67242 * 4 3 2 6 6 H 1.08003 * 120.00466 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00134 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99612 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47105 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47515 * 119.99778 * 9 7 5 12 12 H 1.48503 * 109.47116 * 239.99733 * 9 7 5 13 13 C 1.34777 * 120.00197 * 265.04090 * 3 2 1 14 14 O 1.21564 * 119.99630 * 5.80108 * 13 3 2 15 15 C 1.47812 * 120.00376 * 185.80080 * 13 3 2 16 16 C 1.39454 * 120.00529 * 175.51895 * 15 13 3 17 17 N 1.32029 * 119.98043 * 179.68045 * 16 15 13 18 18 C 1.32788 * 119.98951 * 0.61323 * 17 16 15 19 19 N 1.38403 * 119.99229 * 179.67940 * 18 17 16 20 20 N 1.36600 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.39846 * 120.00686 * 359.66299 * 18 17 16 22 22 N 1.31477 * 120.02251 * 0.02562 * 21 18 17 23 23 H 1.09003 * 109.47391 * 300.00317 * 1 2 3 24 24 H 1.09010 * 109.46932 * 59.99806 * 1 2 3 25 25 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47662 * 240.00073 * 2 1 3 27 27 H 1.08995 * 109.46871 * 119.99698 * 2 1 3 28 28 H 1.08998 * 109.46892 * 216.67673 * 4 3 2 29 29 H 1.09003 * 109.46518 * 336.67859 * 4 3 2 30 30 H 0.97002 * 120.00015 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.00406 * 359.97438 * 16 15 13 32 32 H 0.97005 * 119.99443 * 179.97438 * 19 18 17 33 33 H 1.00899 * 110.99708 * 56.03920 * 20 19 18 34 34 H 1.00904 * 110.99882 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.98832 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1084 1.2640 5 6 3.5874 2.0216 1.7370 6 1 4.3173 1.4794 1.1542 7 6 3.9623 2.6344 2.9138 8 7 3.0734 3.2943 3.6238 9 14 5.7327 2.5274 3.4998 10 1 6.5283 1.7337 2.5290 11 1 6.3024 3.8947 3.6066 12 1 5.7749 1.8684 4.8299 13 6 2.3380 1.9830 -1.1628 14 8 2.1226 1.4194 -2.2181 15 6 2.9506 3.3282 -1.1549 16 6 3.3672 3.9118 -2.3510 17 7 3.9085 5.1160 -2.3442 18 6 4.0672 5.7658 -1.1971 19 7 4.6408 7.0254 -1.1891 20 7 5.0439 7.5998 -2.3610 21 6 3.6546 5.1777 0.0028 22 7 3.1099 3.9811 -0.0043 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.8890 3.1537 1.1138 29 1 1.5011 1.6669 2.0124 30 1 3.3372 3.7258 4.4515 31 1 3.2426 3.3808 -3.2832 32 1 4.7564 7.5003 -0.3512 33 1 4.2819 7.6489 -3.0206 34 1 5.4405 8.5132 -2.1984 35 1 3.7843 5.7064 0.9356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230122533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:13 Heat of formation + Delta-G solvation = 64.921495 kcal Electronic energy + Delta-G solvation = -20440.975975 eV Core-core repulsion = 17283.151389 eV Total energy + Delta-G solvation = -3157.824586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65214 -38.71698 -36.86778 -35.23125 -33.46587 -32.56644 -31.43918 -30.15182 -27.79797 -26.82413 -24.23126 -23.63990 -22.90831 -22.10988 -19.06693 -18.58463 -17.68630 -16.66532 -16.11999 -16.01455 -15.32512 -15.06735 -14.63011 -14.54965 -14.19195 -13.70361 -13.65650 -13.01039 -12.54544 -12.35862 -12.00375 -11.85333 -11.62108 -11.50536 -10.94520 -10.84694 -10.46367 -10.45430 -10.17322 -9.91437 -9.60912 -9.36088 -9.23863 -8.47931 -8.01692 -7.63300 -7.25052 -6.00636 -3.98889 1.19428 1.80187 2.84508 3.25961 3.34843 3.40190 3.51892 3.96128 4.38361 4.43984 4.56183 4.90605 4.94445 5.30587 5.35799 5.51609 5.73114 5.74236 5.87322 5.95482 6.03458 6.29300 6.31812 6.47819 6.70347 6.77406 6.95512 7.34689 7.55928 7.70447 7.82607 7.92429 8.15828 8.31554 8.38362 8.50423 8.97441 9.09210 9.60340 11.06961 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.009325 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.973201 B = 3001.871562 C = 4663.566970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.578 5.578 4 C 0.231 3.769 5 C -0.493 4.493 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.577 3.423 14 O -0.577 6.577 15 C -0.039 4.039 16 C 0.149 3.851 17 N -0.504 5.504 18 C 0.364 3.636 19 N -0.565 5.565 20 N -0.597 5.597 21 C -0.006 4.006 22 N -0.294 5.294 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.025 0.975 30 H 0.259 0.741 31 H 0.172 0.828 32 H 0.414 0.586 33 H 0.342 0.658 34 H 0.351 0.649 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 6.548 -6.343 9.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.307 5.307 4 C 0.112 3.888 5 C -0.533 4.533 6 H 0.069 0.931 7 C -0.133 4.133 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.364 3.636 14 O -0.458 6.458 15 C -0.179 4.179 16 C -0.012 4.012 17 N -0.227 5.227 18 C 0.123 3.877 19 N -0.292 5.292 20 N -0.222 5.222 21 C -0.178 4.178 22 N -0.009 5.009 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.189 0.811 32 H 0.254 0.746 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.201 5.762 -6.919 9.007 hybrid contribution 0.641 1.158 1.127 1.738 sum 0.440 6.920 -5.792 9.035 Atomic orbital electron populations 1.22101 0.96738 1.01164 1.02070 1.21308 0.93635 0.83721 1.02421 1.48236 1.60707 1.13185 1.08543 1.19990 0.96808 0.93896 0.78154 1.21329 0.94819 1.31492 1.05619 0.93104 1.24750 0.96601 0.95426 0.96553 1.69943 1.33157 1.34832 1.14966 0.86699 0.85897 0.77718 0.78641 1.20058 1.21145 1.21124 1.17556 0.78070 0.84149 0.83812 1.90668 1.57640 1.66224 1.31309 1.21779 1.07195 0.98285 0.90677 1.23371 0.89492 0.89334 0.98978 1.68037 1.18905 1.09138 1.26655 1.19537 0.90349 0.85766 0.92028 1.42874 1.67255 1.14399 1.04672 1.59943 1.34193 1.27271 1.00814 1.23299 1.03621 0.94479 0.96441 1.69411 1.03887 1.02996 1.24631 0.92464 0.92797 0.92469 0.90937 0.90613 0.90553 0.95674 0.93164 0.81086 0.74623 0.84296 0.83600 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.11 2.13 6.11 -4.04 -0.02 2.10 16 3 N -0.58 -12.77 2.48 -176.19 -0.44 -13.21 16 4 C 0.23 5.63 4.78 -5.19 -0.02 5.60 16 5 C -0.49 -12.94 7.62 -34.44 -0.26 -13.20 16 6 H 0.05 1.41 7.81 -52.48 -0.41 1.00 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 9 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.58 12.85 7.59 -12.34 -0.09 12.75 16 14 O -0.58 -13.18 15.90 5.31 0.08 -13.10 16 15 C -0.04 -0.82 6.57 -82.88 -0.54 -1.37 16 16 C 0.15 2.77 10.76 -17.01 -0.18 2.59 16 17 N -0.50 -8.84 9.93 -11.95 -0.12 -8.95 16 18 C 0.36 5.93 7.56 -155.00 -1.17 4.76 16 19 N -0.56 -6.84 6.60 31.22 0.21 -6.63 16 20 N -0.60 -6.22 10.05 60.35 0.61 -5.61 16 21 C -0.01 -0.11 11.08 -17.10 -0.19 -0.30 16 22 N -0.29 -6.30 4.97 -9.45 -0.05 -6.35 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 27 H 0.08 1.40 8.11 -51.93 -0.42 0.97 16 28 H 0.08 1.95 5.53 -51.93 -0.29 1.66 16 29 H 0.03 0.64 8.02 -51.93 -0.42 0.23 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.17 2.90 7.64 -52.49 -0.40 2.50 16 32 H 0.41 3.82 8.83 -185.15 -1.63 2.19 16 33 H 0.34 3.49 9.02 -181.37 -1.64 1.85 16 34 H 0.35 2.35 9.21 -181.36 -1.67 0.68 16 35 H 0.16 2.68 8.06 -52.48 -0.42 2.25 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -31.47 304.16 -9.70 -41.17 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.08 Total: 3.24 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -2.21 Total: 12.37 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.95 Total: -64.06 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.47 -9.70 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230122533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.088 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds