Wall clock time and date at job start Mon Mar 30 2020 05:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46991 * 2 1 4 4 C 1.46503 * 120.00318 * 85.04739 * 3 2 1 5 5 C 1.50695 * 109.47223 * 96.67242 * 4 3 2 6 6 H 1.08003 * 120.00466 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00134 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99612 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00361 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47105 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47515 * 119.99778 * 9 7 5 12 12 H 1.48503 * 109.47116 * 239.99733 * 9 7 5 13 13 C 1.34777 * 120.00197 * 265.04090 * 3 2 1 14 14 O 1.21564 * 119.99630 * 5.80108 * 13 3 2 15 15 C 1.47812 * 120.00376 * 185.80080 * 13 3 2 16 16 C 1.39454 * 120.00529 * 175.51895 * 15 13 3 17 17 N 1.32029 * 119.98043 * 179.68045 * 16 15 13 18 18 C 1.32788 * 119.98951 * 0.61323 * 17 16 15 19 19 N 1.38403 * 119.99229 * 179.67940 * 18 17 16 20 20 N 1.36600 * 120.00293 * 359.97438 * 19 18 17 21 21 C 1.39846 * 120.00686 * 359.66299 * 18 17 16 22 22 N 1.31477 * 120.02251 * 0.02562 * 21 18 17 23 23 H 1.09003 * 109.47391 * 300.00317 * 1 2 3 24 24 H 1.09010 * 109.46932 * 59.99806 * 1 2 3 25 25 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47662 * 240.00073 * 2 1 3 27 27 H 1.08995 * 109.46871 * 119.99698 * 2 1 3 28 28 H 1.08998 * 109.46892 * 216.67673 * 4 3 2 29 29 H 1.09003 * 109.46518 * 336.67859 * 4 3 2 30 30 H 0.97002 * 120.00015 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.00406 * 359.97438 * 16 15 13 32 32 H 0.97005 * 119.99443 * 179.97438 * 19 18 17 33 33 H 1.00899 * 110.99708 * 56.03920 * 20 19 18 34 34 H 1.00904 * 110.99882 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.98832 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1084 1.2640 5 6 3.5874 2.0216 1.7370 6 1 4.3173 1.4794 1.1542 7 6 3.9623 2.6344 2.9138 8 7 3.0734 3.2943 3.6238 9 14 5.7327 2.5274 3.4998 10 1 6.5283 1.7337 2.5290 11 1 6.3024 3.8947 3.6066 12 1 5.7749 1.8684 4.8299 13 6 2.3380 1.9830 -1.1628 14 8 2.1226 1.4194 -2.2181 15 6 2.9506 3.3282 -1.1549 16 6 3.3672 3.9118 -2.3510 17 7 3.9085 5.1160 -2.3442 18 6 4.0672 5.7658 -1.1971 19 7 4.6408 7.0254 -1.1891 20 7 5.0439 7.5998 -2.3610 21 6 3.6546 5.1777 0.0028 22 7 3.1099 3.9811 -0.0043 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.8890 3.1537 1.1138 29 1 1.5011 1.6669 2.0124 30 1 3.3372 3.7258 4.4515 31 1 3.2426 3.3808 -3.2832 32 1 4.7564 7.5003 -0.3512 33 1 4.2819 7.6489 -3.0206 34 1 5.4405 8.5132 -2.1984 35 1 3.7843 5.7064 0.9356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230122533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:13 Heat of formation + Delta-G solvation = 43.217624 kcal Electronic energy + Delta-G solvation = -20441.917126 eV Core-core repulsion = 17283.151389 eV Total energy + Delta-G solvation = -3158.765737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08837 -40.31609 -38.03346 -36.95480 -34.89810 -34.49010 -32.80651 -31.63184 -29.17441 -28.60090 -25.64988 -25.11385 -24.72294 -23.57354 -20.66908 -19.76475 -18.97866 -18.53746 -17.88788 -17.37435 -16.69447 -16.42444 -16.37100 -16.09731 -15.73202 -15.23459 -14.97610 -14.46245 -14.24946 -14.04528 -13.69227 -13.39674 -13.05350 -12.96124 -12.74542 -12.63032 -12.12216 -11.89290 -11.86546 -11.58649 -11.51465 -11.08431 -10.44439 -10.43512 -9.59218 -9.35334 -8.41833 -8.00940 -6.05893 -0.24795 0.37753 1.39003 1.43813 1.52487 1.76112 1.90982 2.35546 2.52095 3.02310 3.21523 3.31933 3.40983 3.60022 3.95196 4.20611 4.31799 4.43399 4.45442 4.59594 4.65929 4.88381 5.03057 5.13607 5.23622 5.32759 5.54641 5.62857 5.92548 6.00977 6.29703 6.32800 6.50228 6.61859 6.86443 7.02299 7.27194 7.37104 7.57447 9.05881 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.009325 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.973201 B = 3001.871562 C = 4663.566970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.105 3.895 3 N -0.586 5.586 4 C 0.249 3.751 5 C -0.497 4.497 6 H 0.030 0.970 7 C 0.036 3.964 8 N -0.911 5.911 9 Si 0.933 3.067 10 H -0.286 1.286 11 H -0.274 1.274 12 H -0.282 1.282 13 C 0.572 3.428 14 O -0.591 6.591 15 C -0.075 4.075 16 C 0.162 3.838 17 N -0.510 5.510 18 C 0.377 3.623 19 N -0.541 5.541 20 N -0.605 5.605 21 C -0.012 4.012 22 N -0.326 5.326 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.183 0.817 32 H 0.430 0.570 33 H 0.349 0.651 34 H 0.375 0.625 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.325 7.936 -6.672 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.315 5.315 4 C 0.129 3.871 5 C -0.536 4.536 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.552 5.552 9 Si 0.761 3.239 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.208 1.208 13 C 0.360 3.640 14 O -0.474 6.474 15 C -0.214 4.214 16 C 0.001 3.999 17 N -0.234 5.234 18 C 0.133 3.867 19 N -0.266 5.266 20 N -0.234 5.234 21 C -0.187 4.187 22 N -0.041 5.041 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.200 0.800 32 H 0.273 0.727 33 H 0.165 0.835 34 H 0.192 0.808 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.724 7.195 -7.238 10.231 hybrid contribution 0.442 0.908 1.150 1.531 sum 1.166 8.103 -6.088 10.202 Atomic orbital electron populations 1.22000 0.94567 1.03062 1.01257 1.21505 0.95458 0.82323 1.02418 1.48265 1.61163 1.14188 1.07862 1.19611 0.95449 0.93534 0.78540 1.21284 0.95128 1.31514 1.05708 0.95179 1.25227 0.99404 0.95146 0.96545 1.70012 1.34439 1.35395 1.15312 0.85906 0.82273 0.77916 0.77821 1.21125 1.19982 1.20776 1.17847 0.77802 0.84817 0.83550 1.90632 1.58436 1.66889 1.31445 1.21629 1.09923 0.98320 0.91555 1.23476 0.88322 0.89551 0.98550 1.68151 1.19559 1.08830 1.26816 1.19573 0.89313 0.86714 0.91141 1.42872 1.64478 1.12933 1.06337 1.59841 1.34437 1.29091 1.00051 1.23493 1.03611 0.93909 0.97701 1.69171 1.04950 1.04505 1.25482 0.93105 0.93634 0.89206 0.90883 0.90566 0.91469 0.97472 0.92882 0.79987 0.72663 0.83546 0.80806 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.11 4.03 6.11 86.38 0.53 4.56 16 3 N -0.59 -26.53 2.48 -829.61 -2.05 -28.59 16 4 C 0.25 12.46 4.78 85.63 0.41 12.87 16 5 C -0.50 -26.51 7.62 25.60 0.19 -26.32 16 6 H 0.03 1.70 7.81 -2.91 -0.02 1.68 16 7 C 0.04 1.91 5.46 84.65 0.46 2.37 16 8 N -0.91 -49.21 13.29 21.45 0.28 -48.92 16 9 Si 0.93 42.45 29.54 68.60 2.03 44.47 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.57 25.99 7.59 86.78 0.66 26.64 16 14 O -0.59 -27.37 15.90 -3.92 -0.06 -27.43 16 15 C -0.08 -3.20 6.57 41.76 0.27 -2.93 16 16 C 0.16 5.94 10.76 84.96 0.91 6.86 16 17 N -0.51 -17.03 9.93 -191.73 -1.90 -18.93 16 18 C 0.38 11.52 7.56 133.32 1.01 12.53 16 19 N -0.54 -11.36 6.60 -55.15 -0.36 -11.73 16 20 N -0.60 -10.51 10.05 37.02 0.37 -10.14 16 21 C -0.01 -0.44 11.08 85.14 0.94 0.50 16 22 N -0.33 -14.08 4.97 -183.80 -0.91 -15.00 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 2.76 7.36 -2.39 -0.02 2.74 16 27 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 28 H 0.07 3.53 5.53 -2.39 -0.01 3.52 16 29 H 0.01 0.38 8.02 -2.39 -0.02 0.37 16 30 H 0.26 13.41 8.31 -92.71 -0.77 12.63 16 31 H 0.18 6.10 7.64 -2.91 -0.02 6.07 16 32 H 0.43 6.42 8.83 -215.49 -1.90 4.51 16 33 H 0.35 5.97 9.02 -210.56 -1.90 4.07 16 34 H 0.38 3.56 9.21 -210.55 -1.94 1.62 16 35 H 0.18 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -67.01 304.16 -1.07 -68.08 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -4.59 Total: 15.20 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: 6.13 Total: 32.99 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -4.58 Total: -133.30 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.01 -1.07 -68.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230122533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.296 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds