Wall clock time and date at job start Mon Mar 30 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46833 * 2 1 4 4 C 1.50696 * 109.46966 * 119.99960 * 2 1 3 5 5 H 1.08002 * 119.99964 * 120.00346 * 4 2 1 6 6 C 1.37884 * 120.00000 * 299.99490 * 4 2 1 7 7 N 1.31511 * 119.99820 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99818 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47287 * 90.00489 * 8 6 4 10 10 H 1.48504 * 109.47271 * 210.00641 * 8 6 4 11 11 H 1.48502 * 109.47546 * 330.00470 * 8 6 4 12 12 N 1.46893 * 109.47236 * 240.00247 * 2 1 3 13 13 C 1.46892 * 111.00118 * 178.43482 * 12 2 1 14 14 C 1.38492 * 111.00169 * 54.47941 * 12 2 1 15 15 N 1.32353 * 119.75477 * 58.17981 * 14 12 2 16 16 C 1.31846 * 121.86660 * 179.97438 * 15 14 12 17 17 C 1.38979 * 121.13400 * 359.97438 * 16 15 14 18 18 N 1.40067 * 120.31627 * 180.02562 * 17 16 15 19 19 C 1.38863 * 119.36696 * 0.02562 * 17 16 15 20 20 C 1.40055 * 118.29810 * 359.74808 * 19 17 16 21 21 C 1.47283 * 120.58031 * 180.24660 * 20 19 17 22 22 O 1.21534 * 120.00038 * 184.62810 * 21 20 19 23 23 O 1.34768 * 120.00104 * 4.62636 * 21 20 19 24 24 H 1.08999 * 109.47343 * 56.59563 * 1 2 3 25 25 H 1.08992 * 109.47056 * 176.59948 * 1 2 3 26 26 H 1.09005 * 109.47058 * 296.59640 * 1 2 3 27 27 H 0.97000 * 119.99613 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47160 * 60.22750 * 13 12 2 29 29 H 1.09001 * 109.47521 * 180.22734 * 13 12 2 30 30 H 1.09003 * 109.47145 * 300.22601 * 13 12 2 31 31 H 1.08008 * 119.43361 * 179.97438 * 16 15 14 32 32 H 0.97003 * 120.00001 * 359.97438 * 18 17 16 33 33 H 0.97002 * 120.00473 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.84985 * 180.02562 * 19 17 16 35 35 H 0.96709 * 117.00189 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4881 -2.5653 3.7123 12 7 2.0197 -0.6924 -1.1994 13 6 3.4876 -0.6796 -1.2522 14 6 1.4770 -0.1402 -2.3477 15 7 1.6613 1.1440 -2.6094 16 6 1.1640 1.7125 -3.6901 17 6 0.4195 0.9819 -4.6085 18 7 -0.1003 1.6031 -5.7512 19 6 0.1958 -0.3698 -4.3824 20 6 0.7397 -0.9490 -3.2290 21 6 0.5382 -2.3795 -2.9425 22 8 0.9421 -2.8529 -1.8985 23 8 -0.0941 -3.1636 -3.8378 24 1 -0.3634 0.5658 -0.8579 25 1 -0.3633 -1.0258 -0.0610 26 1 -0.3633 0.4601 0.9190 27 1 0.7083 1.1610 3.4844 28 1 3.8873 -1.1853 -0.3732 29 1 3.8234 -1.1953 -2.1519 30 1 3.8416 0.3511 -1.2707 31 1 1.3382 2.7640 -3.8647 32 1 0.0584 2.5477 -5.9044 33 1 -0.6190 1.0888 -6.3895 34 1 -0.3789 -0.9604 -5.0805 35 1 -0.2032 -4.0959 -3.6052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235068356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:26 Heat of formation + Delta-G solvation = -24.815101 kcal Electronic energy + Delta-G solvation = -20681.156171 eV Core-core repulsion = 17487.147563 eV Total energy + Delta-G solvation = -3194.008608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.51527 -39.02295 -36.99294 -35.42939 -34.35298 -32.56218 -32.05884 -29.18708 -28.25240 -25.36797 -24.75130 -24.20397 -22.55826 -20.98756 -19.81867 -18.00655 -17.15075 -16.84204 -16.23340 -15.89907 -15.33597 -15.18652 -14.93356 -14.72768 -13.94412 -13.58836 -13.21641 -13.02257 -12.63711 -12.47329 -12.09161 -11.65656 -11.09449 -10.98192 -10.93463 -10.68185 -10.64519 -10.13352 -10.05205 -10.00281 -9.85899 -9.44772 -9.34920 -8.84197 -8.33222 -7.47096 -7.25864 -5.90204 -3.93340 0.90506 1.62622 3.08783 3.34949 3.38702 3.44472 3.50482 3.75393 4.14245 4.45353 4.65779 4.89057 5.01830 5.15483 5.40875 5.55757 5.80987 5.98811 6.11748 6.22803 6.49537 6.50650 6.82425 6.87705 6.91051 7.17369 7.21253 7.29579 7.59552 7.63737 7.84838 7.95002 8.23306 8.31110 8.40863 8.45280 8.72976 9.12107 9.69765 11.16846 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.006505 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.504578 B = 4303.318929 C = 4876.323240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.223 3.777 3 H 0.016 0.984 4 C -0.494 4.494 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.475 5.475 13 C 0.049 3.951 14 C 0.334 3.666 15 N -0.474 5.474 16 C 0.078 3.922 17 C 0.128 3.872 18 N -0.877 5.877 19 C -0.101 4.101 20 C -0.116 4.116 21 C 0.513 3.487 22 O -0.446 6.446 23 O -0.530 6.530 24 H -0.001 1.001 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.259 0.741 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.026 0.974 31 H 0.151 0.849 32 H 0.399 0.601 33 H 0.397 0.603 34 H 0.142 0.858 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -0.826 -17.050 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.119 3.881 3 H 0.034 0.966 4 C -0.533 4.533 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.199 5.199 13 C -0.098 4.098 14 C 0.104 3.896 15 N -0.185 5.185 16 C -0.088 4.088 17 C 0.024 3.976 18 N -0.419 5.419 19 C -0.132 4.132 20 C -0.122 4.122 21 C 0.353 3.647 22 O -0.329 6.329 23 O -0.343 6.343 24 H 0.018 0.982 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.168 0.832 32 H 0.227 0.773 33 H 0.225 0.775 34 H 0.160 0.840 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -1.858 -0.466 -15.963 16.078 hybrid contribution -0.341 -0.444 0.007 0.560 sum -2.199 -0.909 -15.956 16.132 Atomic orbital electron populations 1.21806 0.97998 0.98886 1.00237 1.19315 0.92059 0.92444 0.84284 0.96649 1.21118 1.30687 1.12070 0.89442 0.91703 1.24912 0.95365 0.95151 0.98927 1.69902 1.37158 1.23207 1.23254 0.86499 0.78338 0.80147 0.82436 1.20835 1.21398 1.19810 1.60357 1.07349 1.52347 0.99856 1.22122 0.86699 0.99638 1.01304 1.20025 0.92017 0.85784 0.91728 1.68059 1.19998 1.12651 1.17829 1.22377 0.96444 0.99854 0.90109 1.18659 0.96589 0.92544 0.89849 1.42249 1.62686 1.12825 1.24163 1.21192 1.01340 0.93145 0.97549 1.19614 1.04153 0.91359 0.97025 1.20436 0.75956 0.86824 0.81466 1.91064 1.43906 1.74023 1.23873 1.84546 1.73545 1.26102 1.50133 0.98247 0.94821 0.89249 0.93103 0.89939 0.94186 0.95502 0.83194 0.77318 0.77473 0.84030 0.73542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.70 37.16 0.32 -3.19 16 2 C 0.22 6.06 1.84 -68.87 -0.13 5.93 16 3 H 0.02 0.47 7.96 -51.93 -0.41 0.06 16 4 C -0.49 -14.25 7.94 -34.44 -0.27 -14.52 16 5 H 0.06 1.88 6.79 -52.49 -0.36 1.52 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -26.51 11.30 55.43 0.63 -25.89 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.48 -11.31 2.57 -174.50 -0.45 -11.76 16 13 C 0.05 1.07 9.16 60.06 0.55 1.62 16 14 C 0.33 7.03 3.73 -155.03 -0.58 6.45 16 15 N -0.47 -9.40 9.66 -12.01 -0.12 -9.51 16 16 C 0.08 1.18 11.03 -17.27 -0.19 0.99 16 17 C 0.13 1.65 6.78 -83.59 -0.57 1.09 16 18 N -0.88 -7.25 9.11 32.49 0.30 -6.96 16 19 C -0.10 -1.43 9.59 -38.67 -0.37 -1.80 16 20 C -0.12 -2.10 5.90 -104.68 -0.62 -2.72 16 21 C 0.51 9.22 8.26 34.41 0.28 9.51 16 22 O -0.45 -9.75 15.85 -19.29 -0.31 -10.06 16 23 O -0.53 -6.91 12.76 -40.68 -0.52 -7.42 16 24 H 0.00 -0.04 7.22 -51.93 -0.38 -0.41 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.09 2.58 5.99 -51.93 -0.31 2.26 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.08 1.83 6.57 -51.93 -0.34 1.49 16 29 H 0.04 0.77 8.12 -51.93 -0.42 0.34 16 30 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 32 H 0.40 2.49 8.85 -40.82 -0.36 2.13 16 33 H 0.40 2.51 8.85 -40.82 -0.36 2.15 16 34 H 0.14 1.63 7.70 -52.49 -0.40 1.22 16 35 H 0.41 3.49 9.11 45.56 0.42 3.90 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -34.87 300.07 -5.96 -40.82 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.33 Total: 4.24 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.66 Total: 4.88 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.36 Total: -54.12 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.82 Total: -17.48 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.87 -5.96 -40.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235068356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.008 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds