Wall clock time and date at job start Mon Mar 30 2020 04:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46833 * 2 1 4 4 C 1.50696 * 109.46966 * 119.99960 * 2 1 3 5 5 H 1.08002 * 119.99964 * 120.00346 * 4 2 1 6 6 C 1.37884 * 120.00000 * 299.99490 * 4 2 1 7 7 N 1.31511 * 119.99820 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99818 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47287 * 90.00489 * 8 6 4 10 10 H 1.48504 * 109.47271 * 210.00641 * 8 6 4 11 11 H 1.48502 * 109.47546 * 330.00470 * 8 6 4 12 12 N 1.46893 * 109.47236 * 240.00247 * 2 1 3 13 13 C 1.46892 * 111.00118 * 178.43482 * 12 2 1 14 14 C 1.38492 * 111.00169 * 54.47941 * 12 2 1 15 15 N 1.32353 * 119.75477 * 58.17981 * 14 12 2 16 16 C 1.31846 * 121.86660 * 179.97438 * 15 14 12 17 17 C 1.38979 * 121.13400 * 359.97438 * 16 15 14 18 18 N 1.40067 * 120.31627 * 180.02562 * 17 16 15 19 19 C 1.38863 * 119.36696 * 0.02562 * 17 16 15 20 20 C 1.40055 * 118.29810 * 359.74808 * 19 17 16 21 21 C 1.47283 * 120.58031 * 180.24660 * 20 19 17 22 22 O 1.21534 * 120.00038 * 184.62810 * 21 20 19 23 23 O 1.34768 * 120.00104 * 4.62636 * 21 20 19 24 24 H 1.08999 * 109.47343 * 56.59563 * 1 2 3 25 25 H 1.08992 * 109.47056 * 176.59948 * 1 2 3 26 26 H 1.09005 * 109.47058 * 296.59640 * 1 2 3 27 27 H 0.97000 * 119.99613 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47160 * 60.22750 * 13 12 2 29 29 H 1.09001 * 109.47521 * 180.22734 * 13 12 2 30 30 H 1.09003 * 109.47145 * 300.22601 * 13 12 2 31 31 H 1.08008 * 119.43361 * 179.97438 * 16 15 14 32 32 H 0.97003 * 120.00001 * 359.97438 * 18 17 16 33 33 H 0.97002 * 120.00473 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.84985 * 180.02562 * 19 17 16 35 35 H 0.96709 * 117.00189 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4881 -2.5653 3.7123 12 7 2.0197 -0.6924 -1.1994 13 6 3.4876 -0.6796 -1.2522 14 6 1.4770 -0.1402 -2.3477 15 7 1.6613 1.1440 -2.6094 16 6 1.1640 1.7125 -3.6901 17 6 0.4195 0.9819 -4.6085 18 7 -0.1003 1.6031 -5.7512 19 6 0.1958 -0.3698 -4.3824 20 6 0.7397 -0.9490 -3.2290 21 6 0.5382 -2.3795 -2.9425 22 8 0.9421 -2.8529 -1.8985 23 8 -0.0941 -3.1636 -3.8378 24 1 -0.3634 0.5658 -0.8579 25 1 -0.3633 -1.0258 -0.0610 26 1 -0.3633 0.4601 0.9190 27 1 0.7083 1.1610 3.4844 28 1 3.8873 -1.1853 -0.3732 29 1 3.8234 -1.1953 -2.1519 30 1 3.8416 0.3511 -1.2707 31 1 1.3382 2.7640 -3.8647 32 1 0.0584 2.5477 -5.9044 33 1 -0.6190 1.0888 -6.3895 34 1 -0.3789 -0.9604 -5.0805 35 1 -0.2032 -4.0959 -3.6052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235068356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:25 Heat of formation + Delta-G solvation = -52.112709 kcal Electronic energy + Delta-G solvation = -20682.339885 eV Core-core repulsion = 17487.147563 eV Total energy + Delta-G solvation = -3195.192321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85078 -40.32957 -38.54372 -36.73748 -35.70093 -34.48595 -33.33018 -31.22650 -29.56116 -27.29450 -26.20509 -25.82603 -24.12697 -22.33271 -21.54529 -19.20198 -18.49580 -18.21364 -17.86074 -17.53211 -16.94723 -16.41736 -16.34073 -16.02802 -15.70209 -15.12650 -14.79122 -14.58700 -14.07776 -13.89507 -13.70202 -13.49172 -13.00708 -12.72344 -12.65806 -12.35550 -12.20263 -12.15433 -12.09049 -11.74863 -11.48342 -11.10542 -10.66063 -10.62650 -10.51688 -9.07340 -8.50361 -8.08970 -6.20459 -0.36178 0.38810 1.42233 1.43796 1.55597 1.76986 2.15640 2.43983 2.83942 2.87512 3.10620 3.20985 3.71609 3.86838 4.03607 4.19510 4.47941 4.67722 4.69731 4.76379 4.83103 4.96572 4.99802 5.04743 5.15120 5.34583 5.47183 5.70379 5.76858 5.81841 6.25332 6.29859 6.42223 6.88207 6.89933 6.99725 7.08039 7.22726 7.47066 8.97394 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.006505 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.504578 B = 4303.318929 C = 4876.323240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.235 3.765 3 H -0.024 1.024 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.481 5.481 13 C 0.056 3.944 14 C 0.286 3.714 15 N -0.508 5.508 16 C 0.065 3.935 17 C 0.158 3.842 18 N -0.850 5.850 19 C -0.097 4.097 20 C -0.128 4.128 21 C 0.520 3.480 22 O -0.497 6.497 23 O -0.508 6.508 24 H 0.009 0.991 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.262 0.738 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.180 0.820 32 H 0.413 0.587 33 H 0.413 0.587 34 H 0.176 0.824 35 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -0.885 -19.463 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 H -0.007 1.007 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.204 5.204 13 C -0.091 4.091 14 C 0.057 3.943 15 N -0.219 5.219 16 C -0.101 4.101 17 C 0.049 3.951 18 N -0.393 5.393 19 C -0.128 4.128 20 C -0.133 4.133 21 C 0.362 3.638 22 O -0.384 6.384 23 O -0.323 6.323 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.197 0.803 32 H 0.244 0.756 33 H 0.244 0.756 34 H 0.193 0.807 35 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -2.802 -0.522 -18.472 18.690 hybrid contribution -0.148 -0.333 0.466 0.591 sum -2.950 -0.855 -18.006 18.266 Atomic orbital electron populations 1.21511 0.98022 0.97845 0.99250 1.18939 0.91861 0.90393 0.85882 1.00662 1.21353 1.31011 1.12020 0.90821 0.92611 1.25731 0.95413 0.95821 1.01885 1.70028 1.37877 1.24320 1.24041 0.85460 0.78123 0.78887 0.78567 1.19826 1.20622 1.19617 1.60139 1.07856 1.52415 1.00019 1.22038 0.86515 0.99044 1.01499 1.19895 0.95260 0.86992 0.92183 1.67869 1.21400 1.12542 1.20102 1.22868 0.96497 1.01271 0.89424 1.18617 0.94373 0.92025 0.90055 1.42239 1.60931 1.13732 1.22356 1.21457 1.00860 0.93841 0.96602 1.19688 1.04236 0.91465 0.97948 1.20500 0.75086 0.87179 0.81033 1.91047 1.46320 1.74989 1.26085 1.84474 1.72023 1.27519 1.48240 0.97249 0.95866 0.91645 0.92896 0.91531 0.92014 0.96419 0.80308 0.75584 0.75602 0.80696 0.71046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.02 8.70 71.98 0.63 -5.39 16 2 C 0.23 13.36 1.84 44.17 0.08 13.44 16 3 H -0.02 -1.53 7.96 -2.38 -0.02 -1.55 16 4 C -0.51 -30.81 7.94 25.60 0.20 -30.61 16 5 H 0.06 3.37 6.79 -2.91 -0.02 3.35 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -56.16 11.30 21.45 0.24 -55.92 16 8 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 12 N -0.48 -23.82 2.57 -705.98 -1.81 -25.63 16 13 C 0.06 2.56 9.16 127.69 1.17 3.73 16 14 C 0.29 12.20 3.73 133.59 0.50 12.70 16 15 N -0.51 -20.23 9.66 -191.91 -1.85 -22.08 16 16 C 0.07 1.84 11.03 84.87 0.94 2.78 16 17 C 0.16 3.49 6.78 38.15 0.26 3.74 16 18 N -0.85 -9.79 9.11 -51.11 -0.47 -10.26 16 19 C -0.10 -2.42 9.59 22.86 0.22 -2.20 16 20 C -0.13 -4.51 5.90 -19.90 -0.12 -4.63 16 21 C 0.52 18.29 8.26 70.20 0.58 18.87 16 22 O -0.50 -22.16 15.85 19.73 0.31 -21.85 16 23 O -0.51 -11.93 12.76 -56.79 -0.72 -12.65 16 24 H 0.01 0.45 7.22 -2.39 -0.02 0.43 16 25 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.92 5.99 -2.38 -0.01 3.90 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.07 3.13 6.57 -2.39 -0.02 3.12 16 29 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 30 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 31 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.41 3.07 8.85 -92.71 -0.82 2.24 16 33 H 0.41 2.89 8.85 -92.71 -0.82 2.07 16 34 H 0.18 3.14 7.70 -2.91 -0.02 3.12 16 35 H 0.43 6.26 9.11 -74.05 -0.67 5.59 16 Total: -1.00 -79.72 300.07 1.47 -78.25 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -1.16 Total: 8.32 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.90 Total: 13.44 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.89 Total: -113.88 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.41 Total: -34.50 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.72 1.47 -78.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235068356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.138 kcal (2) G-P(sol) polarization free energy of solvation -79.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds