Wall clock time and date at job start Mon Mar 30 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 13 13 C 1.50700 * 109.47144 * 65.00484 * 12 2 1 14 14 N 1.30937 * 126.44747 * 89.71179 * 13 12 2 15 15 C 1.35224 * 105.57607 * 179.89289 * 14 13 12 16 16 C 1.48451 * 126.40397 * 180.13126 * 15 14 13 17 17 O 1.21482 * 120.00024 * 0.25865 * 16 15 14 18 18 N 1.34780 * 119.99935 * 180.24937 * 16 15 14 19 19 C 1.46504 * 119.99771 * 180.02562 * 18 16 15 20 20 C 1.52995 * 117.49882 * 223.74910 * 19 18 16 21 21 C 1.52995 * 117.49509 * 155.09323 * 19 18 16 22 22 N 1.30665 * 107.18820 * 0.37187 * 15 14 13 23 23 O 1.21284 * 110.11121 * 359.76498 * 22 15 14 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.46866 * 185.00388 * 12 2 1 29 29 H 1.09003 * 109.47260 * 304.99704 * 12 2 1 30 30 H 0.96998 * 119.99966 * 0.02562 * 18 16 15 31 31 H 1.09000 * 115.55105 * 9.42110 * 19 18 16 32 32 H 1.09011 * 117.49909 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.49971 * 145.02209 * 20 19 18 34 34 H 1.08998 * 117.49948 * 214.98291 * 21 19 18 35 35 H 1.09003 * 117.50012 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 6 2.0399 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3333 1.0068 -3.0540 15 6 1.5896 1.4070 -4.1102 16 6 1.9449 2.4670 -5.0868 17 8 2.9970 3.0647 -4.9785 18 7 1.1004 2.7663 -6.0936 19 6 1.4513 3.8121 -7.0577 20 6 0.3561 4.8044 -7.4534 21 6 0.8152 3.7343 -8.4470 22 7 0.4975 0.6896 -4.1073 23 8 0.5121 -0.0887 -3.1772 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7164 1.1670 3.4843 28 1 3.1263 -0.7996 -1.2054 29 1 1.6054 -1.7199 -1.2950 30 1 0.2602 2.2892 -6.1799 31 1 2.4720 4.1889 -6.9918 32 1 -0.6255 4.6794 -6.9961 33 1 0.6563 5.8340 -7.6483 34 1 1.4172 4.0602 -9.2951 35 1 0.1359 2.9049 -8.6438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235088888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:58 Heat of formation + Delta-G solvation = 51.485545 kcal Electronic energy + Delta-G solvation = -19309.553131 eV Core-core repulsion = 16118.853167 eV Total energy + Delta-G solvation = -3190.699964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.40072 -39.94807 -37.39333 -35.90448 -35.08875 -33.43640 -32.44154 -30.74164 -26.72628 -25.89987 -25.24162 -23.05977 -22.77380 -22.12461 -20.94418 -19.91459 -18.12534 -17.89162 -17.08855 -16.52150 -16.30611 -15.06214 -14.85522 -14.70580 -14.63289 -13.99815 -13.54054 -13.08794 -12.90098 -12.30180 -12.00682 -11.86395 -11.78009 -11.46140 -11.31851 -10.98165 -10.94776 -10.87656 -10.70278 -10.50793 -10.28753 -10.19821 -9.96083 -9.33471 -9.13802 -9.01397 -8.43904 -6.08645 -4.17278 0.97546 1.91304 2.38714 3.00805 3.07934 3.27631 3.34790 3.36845 3.57102 3.80364 4.18562 4.36888 4.38263 4.56196 4.61625 5.08899 5.23352 5.24700 5.40027 5.54425 5.69033 5.76112 5.87683 6.08727 6.10463 6.17932 6.44601 6.75927 6.96492 7.03087 7.14097 7.59226 7.76791 7.80035 7.98935 8.24500 8.25111 8.85165 9.48651 10.97720 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.044588 B = 0.003507 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.825346 B = 7982.664179 C = 8048.080643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.029 4.029 13 C 0.227 3.773 14 N -0.454 5.454 15 C 0.125 3.875 16 C 0.621 3.379 17 O -0.497 6.497 18 N -0.689 5.689 19 C 0.079 3.921 20 C -0.191 4.191 21 C -0.186 4.186 22 N -0.366 5.366 23 O 0.090 5.910 24 H 0.003 0.997 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.262 0.738 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.409 0.591 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 2.109 -17.602 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.055 0.945 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.068 4.068 13 C 0.008 3.992 14 N -0.187 5.187 15 C -0.149 4.149 16 C 0.403 3.597 17 O -0.367 6.367 18 N -0.341 5.341 19 C -0.026 4.026 20 C -0.229 4.229 21 C -0.225 4.225 22 N -0.076 5.076 23 O 0.025 5.975 24 H 0.022 0.978 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.245 0.755 31 H 0.160 0.840 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.267 3.095 -18.060 18.463 hybrid contribution -0.292 -0.694 0.955 1.216 sum -2.559 2.401 -17.106 17.462 Atomic orbital electron populations 1.21904 0.98143 0.99590 1.00309 1.18776 0.93131 0.96408 0.88775 0.94543 1.20999 1.32042 1.12722 0.89870 0.92002 1.24955 0.94850 0.94900 0.99147 1.69890 1.36238 1.22666 1.23673 0.86515 0.78641 0.79983 0.82401 1.20591 1.21230 1.19759 1.20987 1.02889 0.97449 0.85436 1.29794 0.80513 0.93128 0.95793 1.72105 1.29051 1.11447 1.06138 1.25322 0.90014 1.01261 0.98281 1.16254 0.83716 0.80417 0.79284 1.90823 1.23201 1.50131 1.72542 1.45070 1.22732 1.38707 1.27547 1.21661 0.99119 0.92204 0.89639 1.23477 0.99885 0.96424 1.03132 1.23420 1.04061 1.01751 0.93223 1.74770 1.20857 1.04863 1.07086 1.85280 1.38926 1.44523 1.28763 0.97815 0.94738 0.89438 0.92779 0.87720 0.88707 0.75486 0.83961 0.88216 0.87610 0.87534 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.79 37.16 0.33 -2.90 16 2 C 0.05 1.14 2.29 -91.77 -0.21 0.93 16 3 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.52 -13.20 8.56 -34.44 -0.29 -13.50 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 7 N -0.89 -24.59 11.33 55.43 0.63 -23.97 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 13 C 0.23 4.22 6.90 -13.01 -0.09 4.13 16 14 N -0.45 -9.14 11.57 -9.94 -0.11 -9.26 16 15 C 0.13 2.25 8.01 -156.18 -1.25 1.00 16 16 C 0.62 10.18 7.85 -12.05 -0.09 10.09 16 17 O -0.50 -9.54 16.67 5.38 0.09 -9.45 16 18 N -0.69 -8.24 5.56 -54.56 -0.30 -8.54 16 19 C 0.08 0.77 6.43 -67.93 -0.44 0.33 16 20 C -0.19 -1.41 10.46 -26.70 -0.28 -1.69 16 21 C -0.19 -1.26 10.46 -26.70 -0.28 -1.54 16 22 N -0.37 -6.15 11.89 30.92 0.37 -5.78 16 23 O 0.09 1.57 10.73 17.98 0.19 1.77 16 24 H 0.00 0.06 6.93 -51.93 -0.36 -0.30 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.24 6.08 -51.93 -0.32 1.93 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.41 4.19 8.56 -40.82 -0.35 3.84 16 31 H 0.14 1.50 7.40 -51.93 -0.38 1.11 16 32 H 0.10 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -29.91 309.07 -6.69 -36.59 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.33 Total: 0.85 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.85 Total: -2.24 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.58 Total: -47.55 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.28 Total: -7.68 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.91 -6.69 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235088888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.078 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds