Wall clock time and date at job start Mon Mar 30 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99597 * 2 1 3 13 13 C 1.50700 * 109.47144 * 65.00484 * 12 2 1 14 14 N 1.30937 * 126.44747 * 89.71179 * 13 12 2 15 15 C 1.35224 * 105.57607 * 179.89289 * 14 13 12 16 16 C 1.48451 * 126.40397 * 180.13126 * 15 14 13 17 17 O 1.21482 * 120.00024 * 0.25865 * 16 15 14 18 18 N 1.34780 * 119.99935 * 180.24937 * 16 15 14 19 19 C 1.46504 * 119.99771 * 180.02562 * 18 16 15 20 20 C 1.52995 * 117.49882 * 223.74910 * 19 18 16 21 21 C 1.52995 * 117.49509 * 155.09323 * 19 18 16 22 22 N 1.30665 * 107.18820 * 0.37187 * 15 14 13 23 23 O 1.21284 * 110.11121 * 359.76498 * 22 15 14 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 1.09009 * 109.46866 * 185.00388 * 12 2 1 29 29 H 1.09003 * 109.47260 * 304.99704 * 12 2 1 30 30 H 0.96998 * 119.99966 * 0.02562 * 18 16 15 31 31 H 1.09000 * 115.55105 * 9.42110 * 19 18 16 32 32 H 1.09011 * 117.49909 * 0.02562 * 20 19 18 33 33 H 1.09001 * 117.49971 * 145.02209 * 20 19 18 34 34 H 1.08998 * 117.49948 * 214.98291 * 21 19 18 35 35 H 1.09003 * 117.50012 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.6422 -0.5352 4.4055 10 1 1.3588 -0.9384 5.1155 11 1 2.4973 -2.5585 3.7156 12 6 2.0399 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 7 2.3333 1.0068 -3.0540 15 6 1.5896 1.4070 -4.1102 16 6 1.9449 2.4670 -5.0868 17 8 2.9970 3.0647 -4.9785 18 7 1.1004 2.7663 -6.0936 19 6 1.4513 3.8121 -7.0577 20 6 0.3561 4.8044 -7.4534 21 6 0.8152 3.7343 -8.4470 22 7 0.4975 0.6896 -4.1073 23 8 0.5121 -0.0887 -3.1772 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7164 1.1670 3.4843 28 1 3.1263 -0.7996 -1.2054 29 1 1.6054 -1.7199 -1.2950 30 1 0.2602 2.2892 -6.1799 31 1 2.4720 4.1889 -6.9918 32 1 -0.6255 4.6794 -6.9961 33 1 0.6563 5.8340 -7.6483 34 1 1.4172 4.0602 -9.2951 35 1 0.1359 2.9049 -8.6438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235088888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:58 Heat of formation + Delta-G solvation = 30.417172 kcal Electronic energy + Delta-G solvation = -19310.466724 eV Core-core repulsion = 16118.853167 eV Total energy + Delta-G solvation = -3191.613557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.82903 -41.10220 -38.27076 -37.54679 -36.64362 -34.75854 -33.91523 -32.41134 -28.36930 -27.32344 -27.06817 -24.51153 -23.33201 -23.17459 -22.17654 -21.56192 -19.51929 -19.26524 -18.29081 -18.27451 -17.56464 -16.57021 -16.26249 -15.88541 -15.74546 -15.39798 -15.18346 -14.68279 -13.85660 -13.81125 -13.54128 -13.11398 -13.08122 -12.80067 -12.68872 -12.51059 -12.44128 -12.33929 -12.16047 -11.88886 -11.83183 -11.73180 -11.51352 -10.97247 -10.91885 -10.43910 -10.03384 -8.08072 -6.22607 -0.41195 0.47980 1.25550 1.48825 1.49866 1.58935 1.62197 1.72325 2.47594 2.55030 2.85010 2.88915 3.22572 3.66444 3.73879 3.97522 3.99832 4.27840 4.40105 4.46790 4.57183 4.70711 4.73138 4.80985 4.97551 5.02778 5.11149 5.16914 5.21260 5.32029 5.62805 5.86139 5.97489 6.07538 6.29369 6.62811 6.82478 6.88809 7.47018 8.97879 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.044588 B = 0.003507 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.825346 B = 7982.664179 C = 8048.080643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.047 3.953 3 H -0.006 1.006 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.258 1.258 12 C -0.018 4.018 13 C 0.229 3.771 14 N -0.486 5.486 15 C 0.117 3.883 16 C 0.617 3.383 17 O -0.536 6.536 18 N -0.666 5.666 19 C 0.041 3.959 20 C -0.180 4.180 21 C -0.160 4.160 22 N -0.351 5.351 23 O 0.096 5.904 24 H 0.014 0.986 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.260 0.740 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.419 0.581 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 1.093 -19.051 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.027 3.973 3 H 0.012 0.988 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.182 1.182 12 C -0.057 4.057 13 C 0.010 3.990 14 N -0.219 5.219 15 C -0.157 4.157 16 C 0.399 3.601 17 O -0.410 6.410 18 N -0.317 5.317 19 C -0.064 4.064 20 C -0.218 4.218 21 C -0.198 4.198 22 N -0.059 5.059 23 O 0.031 5.969 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.144 0.856 30 H 0.256 0.744 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.897 2.067 -19.559 19.880 hybrid contribution -0.162 -0.323 1.305 1.354 sum -3.059 1.744 -18.254 18.591 Atomic orbital electron populations 1.21739 0.97754 1.00182 0.99230 1.18646 0.93451 0.94505 0.90692 0.98771 1.21444 1.31545 1.12903 0.90622 0.90755 1.25776 0.95197 0.95593 1.02247 1.70047 1.37733 1.24256 1.24026 0.85531 0.77638 0.79549 0.78787 1.20726 1.21521 1.18235 1.20808 1.03497 0.98123 0.83232 1.29648 0.80685 0.92862 0.95830 1.72085 1.30375 1.12199 1.07264 1.25665 0.89952 1.01787 0.98289 1.16276 0.83917 0.80077 0.79869 1.90797 1.24910 1.51560 1.73701 1.45015 1.22015 1.38428 1.26274 1.21898 0.99635 0.93380 0.91447 1.23575 0.98811 0.96962 1.02458 1.23541 1.02991 1.01412 0.91887 1.74744 1.20129 1.04353 1.06691 1.85272 1.38402 1.44524 1.28749 0.96743 0.93144 0.92630 0.93087 0.86936 0.85584 0.74381 0.85324 0.87852 0.86340 0.85752 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.79 71.98 0.63 -5.32 16 2 C 0.05 2.18 2.29 -11.54 -0.03 2.16 16 3 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 4 C -0.53 -26.56 8.56 25.60 0.22 -26.34 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.01 0.56 5.31 84.66 0.45 1.01 16 7 N -0.92 -52.10 11.33 21.45 0.24 -51.86 16 8 Si 0.96 41.57 29.54 68.60 2.03 43.60 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 12 C -0.02 -0.64 5.26 29.85 0.16 -0.48 16 13 C 0.23 8.34 6.90 88.36 0.61 8.95 16 14 N -0.49 -19.59 11.57 -302.80 -3.50 -23.10 16 15 C 0.12 4.19 8.01 137.33 1.10 5.29 16 16 C 0.62 20.30 7.85 86.97 0.68 20.99 16 17 O -0.54 -21.13 16.67 -3.66 -0.06 -21.19 16 18 N -0.67 -15.35 5.56 -444.83 -2.48 -17.83 16 19 C 0.04 0.74 6.43 44.99 0.29 1.03 16 20 C -0.18 -2.24 10.46 30.61 0.32 -1.92 16 21 C -0.16 -1.71 10.46 30.61 0.32 -1.39 16 22 N -0.35 -11.37 11.89 -59.39 -0.71 -12.08 16 23 O 0.10 3.21 10.73 74.42 0.80 4.01 16 24 H 0.01 0.58 6.93 -2.39 -0.02 0.56 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.05 2.89 6.08 -2.39 -0.01 2.88 16 27 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 28 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 29 H 0.13 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.42 7.91 8.56 -92.71 -0.79 7.11 16 31 H 0.13 2.72 7.40 -2.39 -0.02 2.71 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.23 16 33 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -65.39 309.07 1.41 -63.98 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.33 Total: 10.49 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.75 Total: 3.97 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -6.44 Total: -104.86 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.74 Total: -17.18 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -65.39 1.41 -63.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235088888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.400 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds