Wall clock time and date at job start Mon Mar 30 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47081 * 2 1 4 4 C 1.52995 * 109.47098 * 119.99615 * 2 1 3 5 5 C 1.50694 * 109.47479 * 294.99987 * 4 2 1 6 6 H 1.07999 * 120.00113 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99854 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00283 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47340 * 90.00259 * 9 7 5 11 11 H 1.48498 * 109.47711 * 210.00602 * 9 7 5 12 12 H 1.48505 * 109.46881 * 330.00614 * 9 7 5 13 13 C 1.50699 * 109.47099 * 240.00236 * 2 1 3 14 14 N 1.30942 * 126.44730 * 119.99988 * 13 2 1 15 15 C 1.35221 * 105.57931 * 180.02562 * 14 13 2 16 16 C 1.48446 * 126.40532 * 179.97438 * 15 14 13 17 17 O 1.21477 * 120.00528 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99919 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00248 * 180.02562 * 18 16 15 20 20 C 1.53006 * 117.50119 * 223.75062 * 19 18 16 21 21 C 1.52998 * 117.50151 * 155.09072 * 19 18 16 22 22 N 1.30664 * 107.18890 * 359.97438 * 15 14 13 23 23 O 1.21293 * 110.11236 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.47240 * 299.99857 * 1 2 3 25 25 H 1.08998 * 109.47030 * 59.99842 * 1 2 3 26 26 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46981 * 55.00430 * 4 2 1 28 28 H 1.09005 * 109.46786 * 174.99917 * 4 2 1 29 29 H 0.97002 * 119.99645 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00387 * 359.97438 * 18 16 15 31 31 H 1.09003 * 115.54904 * 9.41603 * 19 18 16 32 32 H 1.08998 * 117.49267 * 359.97438 * 20 19 18 33 33 H 1.08999 * 117.49589 * 145.01843 * 20 19 18 34 34 H 1.09008 * 117.49453 * 214.98171 * 21 19 18 35 35 H 1.08995 * 117.49694 * 359.96997 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5192 3.8512 9 14 1.4977 0.5622 5.2497 10 1 0.1703 0.0938 5.7228 11 1 2.5067 0.3521 6.3188 12 1 1.4228 2.0075 4.9169 13 6 2.0323 -0.7104 -1.2305 14 7 2.7882 -0.1993 -2.1697 15 6 2.9818 -1.1961 -3.0626 16 6 3.7758 -1.1157 -4.3143 17 8 4.3280 -0.0772 -4.6178 18 7 3.8839 -2.1951 -5.1142 19 6 4.6679 -2.1160 -6.3492 20 6 4.0675 -2.7442 -7.6086 21 6 5.2465 -3.4195 -6.9035 22 7 2.3394 -2.2433 -2.6177 23 8 1.7899 -1.9809 -1.5686 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7994 1.2055 29 1 2.9229 -1.8421 4.7318 30 1 3.4433 -3.0246 -4.8718 31 1 5.2608 -1.2097 -6.4725 32 1 3.0895 -3.2166 -7.5181 33 1 4.2658 -2.2513 -8.5604 34 1 6.2199 -3.3705 -7.3916 35 1 5.0442 -4.3357 -6.3489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235094456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:10 Heat of formation + Delta-G solvation = 48.173074 kcal Electronic energy + Delta-G solvation = -19196.352234 eV Core-core repulsion = 16005.508630 eV Total energy + Delta-G solvation = -3190.843603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -45.42787 -39.97796 -37.41614 -36.05595 -35.15765 -33.38611 -32.52678 -30.95343 -27.19688 -25.89743 -24.73538 -23.05828 -22.79115 -22.42423 -21.30262 -20.10522 -17.95562 -17.69926 -17.11106 -16.68211 -16.41092 -15.10416 -14.88004 -14.72145 -14.58108 -14.50811 -13.47467 -13.10749 -12.71525 -12.50109 -12.04241 -12.00824 -11.86241 -11.49372 -11.44622 -11.02789 -11.00596 -10.93968 -10.85585 -10.61685 -10.52786 -10.28732 -10.08102 -9.39450 -9.29919 -9.16293 -8.47972 -6.12123 -4.16253 0.95032 1.86916 2.35860 2.97576 3.04818 3.27214 3.34515 3.36930 3.55045 3.77504 4.11481 4.35048 4.38915 4.54242 4.60042 5.03499 5.23548 5.24583 5.37487 5.52050 5.61702 5.66761 5.67351 5.76598 6.01810 6.08170 6.12887 6.47405 6.58496 6.76243 7.00609 7.42362 7.49105 7.74072 7.82928 8.17915 8.21711 8.87867 9.48587 10.99180 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045038 B = 0.003420 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.553814 B = 8184.710044 C = 8301.349599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 H 0.111 0.889 4 C 0.028 3.972 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.228 3.772 14 N -0.459 5.459 15 C 0.124 3.876 16 C 0.622 3.378 17 O -0.498 6.498 18 N -0.688 5.688 19 C 0.079 3.921 20 C -0.191 4.191 21 C -0.186 4.186 22 N -0.364 5.364 23 O 0.097 5.903 24 H 0.087 0.913 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.023 0.977 29 H 0.263 0.737 30 H 0.410 0.590 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 -3.782 -17.676 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.129 0.871 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.009 3.991 14 N -0.192 5.192 15 C -0.150 4.150 16 C 0.404 3.596 17 O -0.369 6.369 18 N -0.340 5.340 19 C -0.027 4.027 20 C -0.229 4.229 21 C -0.224 4.224 22 N -0.073 5.073 23 O 0.032 5.968 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.160 0.840 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.652 -3.529 -18.460 18.805 hybrid contribution -0.420 -0.101 1.166 1.243 sum 0.232 -3.630 -17.294 17.672 Atomic orbital electron populations 1.21802 0.92691 1.02677 1.02235 1.20497 0.96776 0.99091 0.85992 0.87124 1.19272 0.96984 0.96107 0.88631 1.21036 1.36002 1.08740 0.90231 0.91851 1.25002 0.94900 0.95037 0.99264 1.69964 1.38107 1.21003 1.23876 0.86529 0.78274 0.80370 0.82477 1.20539 1.21222 1.19693 1.29862 0.91030 0.80871 0.97327 1.72108 1.16695 1.28093 1.02256 1.25316 1.02720 0.87287 0.99717 1.16238 0.79353 0.83851 0.80155 1.90816 1.45010 1.29116 1.71910 1.45074 1.52610 1.14108 1.22207 1.21666 0.98524 0.99168 0.83300 1.23476 0.98333 1.04208 0.96903 1.23428 0.98832 0.96514 1.03643 1.74805 1.11070 1.23104 0.98285 1.85271 1.53272 1.30536 1.27769 0.89396 0.93913 0.92187 0.95130 0.95848 0.92738 0.75431 0.83961 0.88268 0.87635 0.87489 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.99 37.16 0.33 -1.87 16 2 C 0.00 -0.06 2.81 -91.77 -0.26 -0.32 16 3 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 4 C 0.03 0.66 4.43 -27.89 -0.12 0.54 16 5 C -0.52 -13.36 8.41 -34.44 -0.29 -13.65 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 8 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.23 4.30 7.00 -13.00 -0.09 4.21 16 14 N -0.46 -9.06 11.57 -9.93 -0.11 -9.18 16 15 C 0.12 2.20 8.01 -156.19 -1.25 0.95 16 16 C 0.62 10.01 7.85 -12.05 -0.09 9.92 16 17 O -0.50 -9.34 16.67 5.39 0.09 -9.25 16 18 N -0.69 -8.12 5.56 -54.56 -0.30 -8.42 16 19 C 0.08 0.75 6.43 -67.93 -0.44 0.31 16 20 C -0.19 -1.33 10.46 -26.69 -0.28 -1.61 16 21 C -0.19 -1.27 10.46 -26.69 -0.28 -1.54 16 22 N -0.36 -6.19 11.89 30.93 0.37 -5.82 16 23 O 0.10 1.75 11.29 17.98 0.20 1.95 16 24 H 0.09 1.45 6.95 -51.93 -0.36 1.09 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.41 4.17 8.56 -40.82 -0.35 3.82 16 31 H 0.14 1.47 7.40 -51.93 -0.38 1.08 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -30.33 312.98 -6.60 -36.93 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.40 Total: -0.12 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.87 Total: -1.55 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.69 Total: -48.12 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.29 Total: -7.29 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.33 -6.60 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235094456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.101 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds