Wall clock time and date at job start Mon Mar 30 2020 04:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47081 * 2 1 4 4 C 1.52995 * 109.47098 * 119.99615 * 2 1 3 5 5 C 1.50694 * 109.47479 * 294.99987 * 4 2 1 6 6 H 1.07999 * 120.00113 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00074 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99854 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00283 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47340 * 90.00259 * 9 7 5 11 11 H 1.48498 * 109.47711 * 210.00602 * 9 7 5 12 12 H 1.48505 * 109.46881 * 330.00614 * 9 7 5 13 13 C 1.50699 * 109.47099 * 240.00236 * 2 1 3 14 14 N 1.30942 * 126.44730 * 119.99988 * 13 2 1 15 15 C 1.35221 * 105.57931 * 180.02562 * 14 13 2 16 16 C 1.48446 * 126.40532 * 179.97438 * 15 14 13 17 17 O 1.21477 * 120.00528 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99919 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00248 * 180.02562 * 18 16 15 20 20 C 1.53006 * 117.50119 * 223.75062 * 19 18 16 21 21 C 1.52998 * 117.50151 * 155.09072 * 19 18 16 22 22 N 1.30664 * 107.18890 * 359.97438 * 15 14 13 23 23 O 1.21293 * 110.11236 * 0.02562 * 22 15 14 24 24 H 1.09003 * 109.47240 * 299.99857 * 1 2 3 25 25 H 1.08998 * 109.47030 * 59.99842 * 1 2 3 26 26 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46981 * 55.00430 * 4 2 1 28 28 H 1.09005 * 109.46786 * 174.99917 * 4 2 1 29 29 H 0.97002 * 119.99645 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00387 * 359.97438 * 18 16 15 31 31 H 1.09003 * 115.54904 * 9.41603 * 19 18 16 32 32 H 1.08998 * 117.49267 * 359.97438 * 20 19 18 33 33 H 1.08999 * 117.49589 * 145.01843 * 20 19 18 34 34 H 1.09008 * 117.49453 * 214.98171 * 21 19 18 35 35 H 1.08995 * 117.49694 * 359.96997 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4021 3.7283 8 7 2.6756 -1.5192 3.8512 9 14 1.4977 0.5622 5.2497 10 1 0.1703 0.0938 5.7228 11 1 2.5067 0.3521 6.3188 12 1 1.4228 2.0075 4.9169 13 6 2.0323 -0.7104 -1.2305 14 7 2.7882 -0.1993 -2.1697 15 6 2.9818 -1.1961 -3.0626 16 6 3.7758 -1.1157 -4.3143 17 8 4.3280 -0.0772 -4.6178 18 7 3.8839 -2.1951 -5.1142 19 6 4.6679 -2.1160 -6.3492 20 6 4.0675 -2.7442 -7.6086 21 6 5.2465 -3.4195 -6.9035 22 7 2.3394 -2.2433 -2.6177 23 8 1.7899 -1.9809 -1.5686 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7994 1.2055 29 1 2.9229 -1.8421 4.7318 30 1 3.4433 -3.0246 -4.8718 31 1 5.2608 -1.2097 -6.4725 32 1 3.0895 -3.2166 -7.5181 33 1 4.2658 -2.2513 -8.5604 34 1 6.2199 -3.3705 -7.3916 35 1 5.0442 -4.3357 -6.3489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235094456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:08 Heat of formation + Delta-G solvation = 26.754076 kcal Electronic energy + Delta-G solvation = -19197.281031 eV Core-core repulsion = 16005.508630 eV Total energy + Delta-G solvation = -3191.772401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.87263 -41.11851 -38.27793 -37.64039 -36.66771 -34.74077 -34.13724 -32.44228 -28.99475 -27.18459 -26.32554 -24.68716 -23.66476 -23.32744 -22.40934 -21.47851 -19.40680 -19.04714 -18.56747 -18.30493 -17.57610 -16.51047 -16.30122 -16.19082 -15.86545 -15.49678 -15.06038 -14.43850 -14.02318 -13.84208 -13.74052 -13.13717 -12.99847 -12.78576 -12.68193 -12.65544 -12.44346 -12.41375 -12.26895 -11.99156 -11.86311 -11.71027 -11.51480 -11.24782 -11.03191 -10.52822 -10.04193 -8.16712 -6.26635 -0.45346 0.42318 1.22462 1.48024 1.49146 1.56039 1.59794 1.69076 2.44939 2.52304 2.75935 2.88638 3.19392 3.65402 3.68056 3.97177 3.99528 4.12937 4.19546 4.27024 4.52868 4.61473 4.66552 4.73179 4.97524 5.05714 5.07767 5.16961 5.20358 5.39717 5.42613 5.58988 5.81572 5.95447 6.17704 6.59836 6.76993 6.87287 7.42609 8.95733 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.045038 B = 0.003420 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.553814 B = 8184.710044 C = 8301.349599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 H 0.114 0.886 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.229 3.771 14 N -0.482 5.482 15 C 0.120 3.880 16 C 0.619 3.381 17 O -0.534 6.534 18 N -0.666 5.666 19 C 0.041 3.959 20 C -0.174 4.174 21 C -0.167 4.167 22 N -0.351 5.351 23 O 0.092 5.908 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.013 0.987 28 H -0.011 1.011 29 H 0.263 0.737 30 H 0.418 0.582 31 H 0.130 0.870 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -3.809 -18.807 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.014 4.014 3 H 0.132 0.868 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.009 3.991 14 N -0.215 5.215 15 C -0.155 4.155 16 C 0.400 3.600 17 O -0.407 6.407 18 N -0.317 5.317 19 C -0.063 4.063 20 C -0.212 4.212 21 C -0.204 4.204 22 N -0.060 5.060 23 O 0.028 5.972 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.007 0.993 29 H 0.071 0.929 30 H 0.256 0.744 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.236 -3.593 -19.620 19.948 hybrid contribution -0.106 -0.173 1.407 1.422 sum -0.342 -3.766 -18.213 18.601 Atomic orbital electron populations 1.21771 0.90179 1.03337 1.03498 1.20302 0.98733 0.98384 0.83954 0.86788 1.19072 0.94743 0.95747 0.90762 1.21496 1.35178 1.09078 0.90800 0.90306 1.25915 0.95013 0.95949 1.02705 1.70106 1.39882 1.22952 1.24498 0.85459 0.77879 0.79429 0.78372 1.19638 1.21731 1.18402 1.29711 0.91021 0.81059 0.97266 1.72088 1.17083 1.29238 1.03070 1.25716 1.02714 0.86877 1.00143 1.16217 0.79230 0.84481 0.80063 1.90793 1.46748 1.30550 1.72630 1.45033 1.51602 1.13053 1.22056 1.21909 1.00323 1.00629 0.83477 1.23575 0.98764 1.02918 0.95936 1.23549 0.99663 0.94926 1.02311 1.74785 1.10765 1.22601 0.97859 1.85267 1.53514 1.30250 1.28162 0.89489 0.91211 0.91882 0.96882 0.99295 0.92866 0.74416 0.85229 0.87652 0.86130 0.85878 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 8.99 71.98 0.65 -3.36 16 2 C 0.01 0.25 2.81 -11.54 -0.03 0.22 16 3 H 0.11 4.22 8.14 -2.38 -0.02 4.20 16 4 C 0.03 1.68 4.43 29.84 0.13 1.81 16 5 C -0.53 -26.95 8.41 25.60 0.22 -26.74 16 6 H 0.08 3.70 7.06 -2.91 -0.02 3.68 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 9 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 13 C 0.23 8.61 7.00 88.36 0.62 9.23 16 14 N -0.48 -19.09 11.57 -302.78 -3.50 -22.59 16 15 C 0.12 4.27 8.01 137.33 1.10 5.37 16 16 C 0.62 19.90 7.85 86.96 0.68 20.59 16 17 O -0.53 -20.33 16.67 -3.64 -0.06 -20.39 16 18 N -0.67 -15.13 5.56 -444.83 -2.47 -17.60 16 19 C 0.04 0.73 6.43 44.99 0.29 1.02 16 20 C -0.17 -1.97 10.46 30.62 0.32 -1.65 16 21 C -0.17 -1.82 10.46 30.62 0.32 -1.50 16 22 N -0.35 -11.78 11.89 -59.36 -0.71 -12.49 16 23 O 0.09 3.31 11.29 74.41 0.84 4.15 16 24 H 0.09 2.71 6.95 -2.39 -0.02 2.69 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 28 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.42 7.92 8.56 -92.71 -0.79 7.13 16 31 H 0.13 2.66 7.40 -2.39 -0.02 2.64 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.94 312.98 1.49 -64.45 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.33 Total: 9.27 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 4.76 Total: 5.56 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -6.40 Total: -106.79 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.78 Total: -16.24 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -65.94 1.49 -64.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235094456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.208 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds