Wall clock time and date at job start Mon Mar 30 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47436 * 270.00324 * 3 2 1 5 5 H 1.48502 * 109.47165 * 30.00545 * 3 2 1 6 6 H 1.48505 * 109.47266 * 149.99824 * 3 2 1 7 7 C 1.37879 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99918 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.48568 * 110.99975 * 290.11897 * 10 9 7 12 12 C 1.54377 * 104.59230 * 200.96140 * 11 10 9 13 13 H 1.08995 * 110.32617 * 264.84944 * 12 11 10 14 14 O 1.42903 * 110.31619 * 142.75262 * 12 11 10 15 15 C 1.54259 * 105.06102 * 23.85818 * 12 11 10 16 16 C 1.48562 * 110.99570 * 174.70728 * 10 9 7 17 17 H 1.08998 * 110.41798 * 40.25756 * 16 10 9 18 18 C 1.50705 * 110.41150 * 277.93046 * 16 10 9 19 19 C 1.38268 * 119.98486 * 139.99794 * 18 16 10 20 20 C 1.38226 * 120.04546 * 180.02562 * 19 18 16 21 21 C 1.38214 * 120.02966 * 0.02562 * 20 19 18 22 22 C 1.38441 * 119.97327 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.02283 * 180.02562 * 22 21 20 24 24 C 1.38180 * 119.98630 * 319.73382 * 18 16 10 25 25 H 0.96997 * 119.99555 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47224 * 59.99347 * 9 7 2 27 27 H 1.09004 * 109.47005 * 299.99566 * 9 7 2 28 28 H 1.09002 * 110.40652 * 82.18048 * 11 10 9 29 29 H 1.08998 * 110.41255 * 319.74402 * 11 10 9 30 30 H 0.96700 * 114.00311 * 61.45502 * 14 12 11 31 31 H 1.09004 * 110.32459 * 118.89518 * 15 12 11 32 32 H 1.08998 * 110.32003 * 241.10046 * 15 12 11 33 33 H 1.07992 * 119.97697 * 0.03110 * 19 18 16 34 34 H 1.08005 * 119.98267 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.01667 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.01319 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 3.7284 -3.2403 1.3020 12 6 4.7264 -4.4167 1.3575 13 1 4.2526 -5.3322 1.0034 14 8 5.2116 -4.5934 2.6900 15 6 5.8793 -4.0090 0.4171 16 6 5.4808 -2.6205 -0.1274 17 1 5.9363 -1.8321 0.4717 18 6 5.8880 -2.4832 -1.5719 19 6 6.9858 -1.7136 -1.9102 20 6 7.3601 -1.5864 -3.2347 21 6 6.6370 -2.2280 -4.2226 22 6 5.5371 -2.9979 -3.8851 23 9 4.8299 -3.6259 -4.8498 24 6 5.1675 -3.1309 -2.5572 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8753 -0.6796 -0.8895 28 1 2.7032 -3.6095 1.3334 29 1 3.9096 -2.5488 2.1249 30 1 4.5229 -4.8071 3.3343 31 1 6.8153 -3.9437 0.9719 32 1 5.9718 -4.7240 -0.4003 33 1 7.5512 -1.2117 -1.1391 34 1 8.2176 -0.9847 -3.4979 35 1 6.9294 -2.1281 -5.2574 36 1 4.3129 -3.7357 -2.2922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281603512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:51 Heat of formation + Delta-G solvation = -62.338155 kcal Electronic energy + Delta-G solvation = -20165.620469 eV Core-core repulsion = 16950.064777 eV Total energy + Delta-G solvation = -3215.555691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63653 -39.69457 -38.05354 -35.70413 -32.98963 -31.56012 -30.51919 -30.28623 -27.33939 -26.75224 -23.20345 -22.40871 -21.74756 -20.34307 -19.87497 -17.56338 -17.13238 -16.61834 -16.08539 -15.92759 -15.34008 -15.19843 -14.52652 -14.11350 -13.85566 -13.65921 -13.23809 -13.15638 -12.86920 -12.71909 -12.29654 -12.12516 -11.78427 -11.62971 -11.43705 -11.19159 -10.69291 -10.55482 -10.51430 -10.49972 -9.90846 -9.69434 -9.35689 -8.70247 -8.61293 -8.48070 -7.75029 -6.10122 -4.08092 1.32702 1.43650 3.25370 3.32586 3.34031 3.73847 4.28176 4.37762 4.43802 4.61035 4.85819 4.97467 5.07329 5.11113 5.21141 5.26620 5.35432 5.44906 5.55028 5.66555 5.83205 6.00229 6.04414 6.15660 6.21792 6.25263 6.36243 6.42821 6.45987 6.66004 6.78291 6.80884 7.10555 7.40312 7.69266 7.74423 7.82524 8.56102 8.97361 9.51264 11.02870 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.008111 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.520396 B = 3451.329670 C = 4703.589640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.153 3.847 10 N -0.486 5.486 11 C 0.016 3.984 12 C 0.094 3.906 13 H 0.066 0.934 14 O -0.570 6.570 15 C -0.105 4.105 16 C 0.091 3.909 17 H 0.059 0.941 18 C -0.033 4.033 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.162 4.162 22 C 0.092 3.908 23 F -0.143 7.143 24 C -0.115 4.115 25 H 0.264 0.736 26 H -0.008 1.008 27 H 0.027 0.973 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.378 0.622 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 -6.416 -1.798 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.098 0.902 9 C 0.027 3.973 10 N -0.210 5.210 11 C -0.113 4.113 12 C 0.035 3.965 13 H 0.084 0.916 14 O -0.376 6.376 15 C -0.143 4.143 16 C -0.018 4.018 17 H 0.077 0.923 18 C -0.034 4.034 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.181 4.181 22 C 0.073 3.927 23 F -0.122 7.122 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.010 0.990 27 H 0.045 0.955 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.225 0.775 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.434 -6.444 -2.561 16.013 hybrid contribution -0.061 1.386 0.639 1.527 sum 14.373 -5.058 -1.923 15.358 Atomic orbital electron populations 1.69887 1.06090 1.26887 1.50843 1.24881 0.94728 0.98808 0.94744 0.86903 0.80308 0.84142 0.78715 1.20051 1.21104 1.19284 1.20941 0.88421 0.94772 1.50638 0.90180 1.20351 0.97431 0.84151 0.95392 1.65327 1.06263 1.19841 1.29605 1.23670 0.99981 0.95438 0.92163 1.22666 0.94166 0.97423 0.82235 0.91616 1.86483 1.38768 1.93635 1.18691 1.22316 0.98259 0.95911 0.97823 1.21579 0.92075 0.96841 0.91327 0.92294 1.19547 0.93867 0.95082 0.94878 1.21091 0.97550 0.99692 0.96488 1.20855 0.99496 0.98938 0.92268 1.21058 0.96279 1.00178 1.00610 1.17761 0.92635 0.96557 0.85793 1.91482 1.77689 1.80489 1.62505 1.21093 1.00858 1.01376 0.90026 0.92605 0.98998 0.95531 0.89362 0.93152 0.77516 0.90304 0.90231 0.85773 0.85428 0.85311 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -14.26 9.37 -34.44 -0.32 -14.58 16 8 H 0.08 2.43 7.85 -52.49 -0.41 2.02 16 9 C 0.15 3.65 3.58 -4.98 -0.02 3.64 16 10 N -0.49 -9.67 4.36 -224.93 -0.98 -10.65 16 11 C 0.02 0.29 5.70 -2.18 -0.01 0.27 16 12 C 0.09 1.36 4.42 -25.35 -0.11 1.25 16 13 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 14 O -0.57 -7.68 13.27 -35.23 -0.47 -8.15 16 15 C -0.11 -1.49 6.33 -25.35 -0.16 -1.65 16 16 C 0.09 1.50 2.46 -67.22 -0.17 1.33 16 17 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 18 C -0.03 -0.52 4.58 -104.63 -0.48 -1.00 16 19 C -0.13 -1.77 9.68 -39.57 -0.38 -2.15 16 20 C -0.10 -1.19 10.04 -39.59 -0.40 -1.59 16 21 C -0.16 -2.15 10.03 -39.52 -0.40 -2.54 16 22 C 0.09 1.43 7.30 -39.42 -0.29 1.14 16 23 F -0.14 -2.31 17.27 2.25 0.04 -2.27 16 24 C -0.11 -1.89 9.13 -39.51 -0.36 -2.25 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H -0.01 -0.19 6.94 -51.93 -0.36 -0.55 16 27 H 0.03 0.65 7.29 -51.93 -0.38 0.28 16 28 H 0.09 1.64 7.94 -51.93 -0.41 1.23 16 29 H 0.05 0.94 7.76 -51.93 -0.40 0.54 16 30 H 0.38 3.58 9.11 45.56 0.41 3.99 16 31 H 0.08 1.06 7.98 -51.93 -0.41 0.64 16 32 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 33 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.15 2.54 7.76 -52.49 -0.41 2.14 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -31.42 303.98 -7.95 -39.38 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.04 Total: 3.06 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -3.19 Total: -16.21 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.21 Total: -37.22 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.47 Total: -8.15 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.42 -7.95 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281603512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.959 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds