Wall clock time and date at job start Mon Mar 30 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47436 * 270.00324 * 3 2 1 5 5 H 1.48502 * 109.47165 * 30.00545 * 3 2 1 6 6 H 1.48505 * 109.47266 * 149.99824 * 3 2 1 7 7 C 1.37879 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99937 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99918 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46761 * 179.97438 * 9 7 2 11 11 C 1.48568 * 110.99975 * 290.11897 * 10 9 7 12 12 C 1.54377 * 104.59230 * 200.96140 * 11 10 9 13 13 H 1.08995 * 110.32617 * 264.84944 * 12 11 10 14 14 O 1.42903 * 110.31619 * 142.75262 * 12 11 10 15 15 C 1.54259 * 105.06102 * 23.85818 * 12 11 10 16 16 C 1.48562 * 110.99570 * 174.70728 * 10 9 7 17 17 H 1.08998 * 110.41798 * 40.25756 * 16 10 9 18 18 C 1.50705 * 110.41150 * 277.93046 * 16 10 9 19 19 C 1.38268 * 119.98486 * 139.99794 * 18 16 10 20 20 C 1.38226 * 120.04546 * 180.02562 * 19 18 16 21 21 C 1.38214 * 120.02966 * 0.02562 * 20 19 18 22 22 C 1.38441 * 119.97327 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.02283 * 180.02562 * 22 21 20 24 24 C 1.38180 * 119.98630 * 319.73382 * 18 16 10 25 25 H 0.96997 * 119.99555 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47224 * 59.99347 * 9 7 2 27 27 H 1.09004 * 109.47005 * 299.99566 * 9 7 2 28 28 H 1.09002 * 110.40652 * 82.18048 * 11 10 9 29 29 H 1.08998 * 110.41255 * 319.74402 * 11 10 9 30 30 H 0.96700 * 114.00311 * 61.45502 * 14 12 11 31 31 H 1.09004 * 110.32459 * 118.89518 * 15 12 11 32 32 H 1.08998 * 110.32003 * 241.10046 * 15 12 11 33 33 H 1.07992 * 119.97697 * 0.03110 * 19 18 16 34 34 H 1.08005 * 119.98267 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.01667 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.01319 * 359.97438 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 3.7284 -3.2403 1.3020 12 6 4.7264 -4.4167 1.3575 13 1 4.2526 -5.3322 1.0034 14 8 5.2116 -4.5934 2.6900 15 6 5.8793 -4.0090 0.4171 16 6 5.4808 -2.6205 -0.1274 17 1 5.9363 -1.8321 0.4717 18 6 5.8880 -2.4832 -1.5719 19 6 6.9858 -1.7136 -1.9102 20 6 7.3601 -1.5864 -3.2347 21 6 6.6370 -2.2280 -4.2226 22 6 5.5371 -2.9979 -3.8851 23 9 4.8299 -3.6259 -4.8498 24 6 5.1675 -3.1309 -2.5572 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6807 0.8904 27 1 3.8753 -0.6796 -0.8895 28 1 2.7032 -3.6095 1.3334 29 1 3.9096 -2.5488 2.1249 30 1 4.5229 -4.8071 3.3343 31 1 6.8153 -3.9437 0.9719 32 1 5.9718 -4.7240 -0.4003 33 1 7.5512 -1.2117 -1.1391 34 1 8.2176 -0.9847 -3.4979 35 1 6.9294 -2.1281 -5.2574 36 1 4.3129 -3.7357 -2.2922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281603512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:51 Heat of formation + Delta-G solvation = -84.765502 kcal Electronic energy + Delta-G solvation = -20166.592991 eV Core-core repulsion = 16950.064777 eV Total energy + Delta-G solvation = -3216.528214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.84170 -40.95198 -39.21944 -36.97204 -34.97212 -33.03843 -31.89264 -31.40683 -28.79651 -28.38968 -24.59653 -23.71395 -23.13742 -21.76238 -21.21391 -19.04482 -18.61082 -18.10765 -17.28923 -17.02330 -16.70188 -16.54758 -16.23772 -15.50918 -15.28381 -14.71691 -14.69646 -14.63451 -14.47885 -14.05443 -13.87652 -13.43299 -13.14082 -13.00057 -12.76076 -12.53301 -12.29218 -12.26267 -11.90177 -11.82128 -11.65777 -11.48045 -10.91035 -10.80807 -9.81795 -9.59275 -9.33579 -8.32513 -6.36042 0.22490 0.34402 1.30812 1.31457 1.41746 2.29954 2.63085 2.99168 3.06014 3.28883 3.43193 3.66010 3.78266 3.90004 3.97070 4.15571 4.26000 4.29669 4.35249 4.55498 4.61033 4.67646 4.76153 4.84758 4.92777 5.01544 5.09563 5.11390 5.17736 5.26056 5.38961 5.47695 5.57916 5.91597 5.99812 6.07354 6.50637 6.69583 6.84490 7.27597 8.83970 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.008111 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.520396 B = 3451.329670 C = 4703.589640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.515 4.515 8 H 0.038 0.962 9 C 0.169 3.831 10 N -0.503 5.503 11 C 0.015 3.985 12 C 0.108 3.892 13 H 0.078 0.922 14 O -0.574 6.574 15 C -0.098 4.098 16 C 0.092 3.908 17 H 0.061 0.939 18 C -0.050 4.050 19 C -0.129 4.129 20 C -0.086 4.086 21 C -0.156 4.156 22 C 0.069 3.931 23 F -0.154 7.154 24 C -0.135 4.135 25 H 0.267 0.733 26 H -0.009 1.009 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.395 0.605 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.704 -5.405 -2.000 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.553 4.553 8 H 0.056 0.944 9 C 0.041 3.959 10 N -0.227 5.227 11 C -0.113 4.113 12 C 0.049 3.951 13 H 0.096 0.904 14 O -0.382 6.382 15 C -0.136 4.136 16 C -0.016 4.016 17 H 0.079 0.921 18 C -0.051 4.051 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.175 4.175 22 C 0.050 3.950 23 F -0.132 7.132 24 C -0.154 4.154 25 H 0.076 0.924 26 H 0.009 0.991 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.245 0.755 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.810 -5.462 -2.748 18.830 hybrid contribution -1.135 0.982 0.704 1.658 sum 16.675 -4.480 -2.044 17.387 Atomic orbital electron populations 1.70041 1.08031 1.28104 1.52433 1.25811 0.95585 1.03002 0.94351 0.85792 0.79517 0.78971 0.79210 1.19274 1.20457 1.17375 1.21177 0.90858 0.93277 1.49995 0.94358 1.20012 0.94454 0.86585 0.94807 1.65181 1.09285 1.17434 1.30802 1.23667 1.00136 0.96570 0.90962 1.22486 0.93341 0.96194 0.83120 0.90372 1.86447 1.39662 1.93514 1.18529 1.22305 0.98528 0.94716 0.98031 1.21642 0.89340 0.98291 0.92330 0.92087 1.19584 0.95128 0.96339 0.94061 1.21421 0.96644 0.98652 0.97983 1.21319 0.99877 0.97968 0.91217 1.21422 0.94924 0.98742 1.02414 1.18030 0.93878 0.97815 0.85304 1.91449 1.78178 1.80904 1.62717 1.20989 1.00957 1.02393 0.91109 0.92394 0.99146 0.95931 0.91455 0.94142 0.75514 0.88769 0.89307 0.83410 0.81387 0.82716 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 13.96 21.45 0.30 -59.08 16 2 C 0.01 0.59 5.47 84.65 0.46 1.06 16 3 Si 0.94 44.32 27.47 68.60 1.88 46.21 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.51 -29.88 9.37 25.60 0.24 -29.64 16 8 H 0.04 2.47 7.85 -2.91 -0.02 2.45 16 9 C 0.17 8.11 3.58 85.56 0.31 8.42 16 10 N -0.50 -20.30 4.36 -865.53 -3.77 -24.07 16 11 C 0.02 0.55 5.70 86.45 0.49 1.05 16 12 C 0.11 3.00 4.42 31.49 0.14 3.14 16 13 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 14 O -0.57 -14.29 13.27 -148.98 -1.98 -16.27 16 15 C -0.10 -2.60 6.33 31.49 0.20 -2.40 16 16 C 0.09 2.94 2.46 44.32 0.11 3.05 16 17 H 0.06 1.92 7.88 -2.39 -0.02 1.90 16 18 C -0.05 -1.53 4.58 -19.87 -0.09 -1.62 16 19 C -0.13 -3.07 9.68 22.27 0.22 -2.85 16 20 C -0.09 -1.74 10.04 22.26 0.22 -1.52 16 21 C -0.16 -3.67 10.03 22.31 0.22 -3.45 16 22 C 0.07 2.10 7.30 22.38 0.16 2.26 16 23 F -0.15 -5.01 17.27 44.97 0.78 -4.23 16 24 C -0.14 -4.49 9.13 22.31 0.20 -4.28 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.01 -0.44 6.94 -2.39 -0.02 -0.45 16 27 H 0.02 1.10 7.29 -2.39 -0.02 1.08 16 28 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 29 H 0.04 1.53 7.76 -2.39 -0.02 1.51 16 30 H 0.39 6.81 9.11 -74.06 -0.67 6.13 16 31 H 0.09 2.24 7.98 -2.38 -0.02 2.22 16 32 H 0.09 2.20 7.71 -2.39 -0.02 2.18 16 33 H 0.15 2.79 8.04 -2.91 -0.02 2.77 16 34 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 36 H 0.12 4.51 7.76 -2.91 -0.02 4.49 16 Total: -1.00 -70.03 303.98 0.46 -69.57 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.36 Total: 14.67 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 2.89 Total: -26.79 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.47 Total: -83.16 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.98 Total: -16.27 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.78 Total: -4.23 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.21 kcal Total: -70.03 0.46 -69.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281603512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.195 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds