Wall clock time and date at job start Mon Mar 30 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00346 * 2 1 4 4 H 1.48501 * 109.47098 * 269.99586 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99907 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99838 * 3 2 1 7 7 C 1.37885 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99844 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.46871 * 35.00433 * 14 13 12 16 16 C 1.52994 * 109.47113 * 275.00325 * 14 13 12 17 17 O 1.42902 * 109.47338 * 294.99847 * 16 14 13 18 18 C 1.50696 * 109.46865 * 155.00158 * 14 13 12 19 19 C 1.38236 * 120.00084 * 39.72869 * 18 14 13 20 20 C 1.38238 * 119.99672 * 179.78424 * 19 18 14 21 21 C 1.38233 * 120.00021 * 0.44454 * 20 19 18 22 22 C 1.38229 * 120.00422 * 359.81015 * 21 20 19 23 23 C 1.38236 * 119.99673 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99079 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 26 26 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 27 27 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 28 28 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 29 29 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 30 30 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 31 31 H 1.00899 * 111.00283 * 303.95539 * 13 12 11 32 32 H 1.08998 * 109.47596 * 55.00036 * 16 14 13 33 33 H 1.09007 * 109.47272 * 175.00278 * 16 14 13 34 34 H 0.96703 * 114.00717 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.99920 * 359.97438 * 19 18 14 36 36 H 1.08000 * 120.00080 * 180.27111 * 20 19 18 37 37 H 1.08008 * 119.99616 * 179.83314 * 21 20 19 38 38 H 1.07997 * 120.00524 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.99891 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 3.9877 -2.5416 0.0010 11 6 5.4122 -2.6545 0.0009 12 6 5.8067 -4.1328 0.0015 13 7 5.3672 -4.7572 -1.2535 14 6 5.7293 -6.1805 -1.2883 15 1 5.6519 -6.5997 -0.2851 16 6 7.1656 -6.3292 -1.7938 17 8 7.2414 -5.8866 -3.1504 18 6 4.7928 -6.9145 -2.2130 19 6 4.3934 -6.3289 -3.3998 20 6 3.5379 -7.0042 -4.2501 21 6 3.0745 -8.2612 -3.9093 22 6 3.4696 -8.8446 -2.7201 23 6 4.3287 -8.1712 -1.8719 24 1 -0.4849 0.8402 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8751 -0.6807 -0.8888 27 1 5.8151 -2.1710 0.8909 28 1 5.8150 -2.1709 -0.8891 29 1 6.8895 -4.2199 0.0910 30 1 5.3309 -4.6355 0.8435 31 1 4.3754 -4.6333 -1.3912 32 1 7.8321 -5.7262 -1.1771 33 1 7.4648 -7.3758 -1.7359 34 1 8.1255 -5.9521 -3.5368 35 1 4.7523 -5.3452 -3.6641 36 1 3.2293 -6.5486 -5.1794 37 1 2.4039 -8.7876 -4.5725 38 1 3.1079 -9.8268 -2.4540 39 1 4.6377 -8.6272 -0.9429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293843020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:22 Heat of formation + Delta-G solvation = -69.088421 kcal Electronic energy + Delta-G solvation = -19708.119276 eV Core-core repulsion = 16615.731176 eV Total energy + Delta-G solvation = -3092.388100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.56239 -37.51165 -36.78335 -35.09174 -32.69295 -31.73343 -30.77313 -29.01332 -27.79285 -26.62987 -23.24945 -22.55725 -21.85857 -21.29374 -20.25560 -17.51803 -17.01720 -16.78418 -15.99488 -15.56120 -15.39965 -14.90267 -14.63069 -14.42267 -14.22793 -13.77980 -13.43171 -13.27371 -12.91459 -12.73565 -12.50373 -12.32936 -11.93628 -11.61195 -11.49975 -10.97711 -10.90240 -10.77784 -10.66770 -10.48996 -9.96626 -9.85248 -9.17435 -8.84168 -8.79204 -8.63549 -8.45770 -8.23892 -6.10382 -4.09310 1.42077 1.54722 3.26325 3.32968 3.34510 3.86660 4.17793 4.33888 4.36895 4.68823 4.69933 4.98204 5.07701 5.15811 5.21271 5.24869 5.39710 5.41476 5.43466 5.51824 5.62658 5.68215 5.75524 5.92014 6.05131 6.08163 6.18364 6.23049 6.52210 6.62842 6.65276 6.71434 7.01802 7.11147 7.20729 7.58712 7.62989 7.68707 8.02399 8.67500 9.00656 9.48999 11.02680 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.004289 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.357786 B = 6527.275562 C = 7335.494227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.059 3.941 12 C 0.064 3.936 13 N -0.671 5.671 14 C 0.126 3.874 15 H 0.061 0.939 16 C 0.095 3.905 17 O -0.551 6.551 18 C -0.086 4.086 19 C -0.071 4.071 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.118 4.118 24 H 0.266 0.734 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.361 0.639 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.369 0.631 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -15.773 -4.913 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.303 6.303 11 C -0.019 4.019 12 C -0.065 4.065 13 N -0.305 5.305 14 C 0.016 3.984 15 H 0.079 0.921 16 C 0.016 3.984 17 O -0.354 6.354 18 C -0.086 4.086 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.137 4.137 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.182 0.818 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.214 0.786 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.434 -15.479 -5.143 21.780 hybrid contribution 0.506 0.664 0.634 1.048 sum 14.939 -14.815 -4.509 21.517 Atomic orbital electron populations 1.69885 1.06069 1.27059 1.50408 1.24767 0.94796 0.98755 0.94629 0.86842 0.80303 0.83742 0.78806 1.19879 1.20821 1.19142 1.20893 0.88303 0.95283 1.51176 0.90041 1.20570 0.96081 0.79410 0.94330 1.87850 1.17650 1.29738 1.95084 1.22356 0.84893 0.95070 0.99584 1.22017 0.99445 0.94417 0.90629 1.60545 1.24018 1.10992 1.34969 1.20520 0.92888 0.89076 0.95947 0.92083 1.22098 0.95752 0.96665 0.83861 1.86631 1.34142 1.88392 1.26252 1.19739 0.97992 0.94712 0.96179 1.21119 0.94921 1.00234 0.92676 1.21223 0.98138 0.95112 0.99980 1.21132 1.00028 0.95851 0.96984 1.21007 0.98824 0.99910 0.94974 1.20993 0.98300 0.94847 0.99528 0.92389 0.98071 0.98274 0.94041 0.93311 0.90718 0.94596 0.81831 0.93675 0.94122 0.78601 0.84655 0.86190 0.86500 0.86463 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.15 5.47 -17.81 -0.10 2.05 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.59 9.99 -34.44 -0.34 -15.94 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.25 16 9 C 0.17 4.41 4.76 36.01 0.17 4.58 16 10 O -0.38 -8.94 9.85 -35.23 -0.35 -9.29 16 11 C 0.06 1.04 6.28 37.16 0.23 1.28 16 12 C 0.06 0.93 5.90 -3.82 -0.02 0.91 16 13 N -0.67 -10.07 5.64 -107.95 -0.61 -10.68 16 14 C 0.13 1.57 2.65 -68.87 -0.18 1.39 16 15 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 16 C 0.10 0.99 6.79 37.15 0.25 1.24 16 17 O -0.55 -6.20 12.07 -35.23 -0.43 -6.62 16 18 C -0.09 -1.14 4.59 -104.62 -0.48 -1.62 16 19 C -0.07 -1.00 8.00 -39.58 -0.32 -1.32 16 20 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 21 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 22 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 23 C -0.12 -1.42 9.67 -39.58 -0.38 -1.80 16 24 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 26 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.90 7.36 -51.93 -0.38 0.51 16 30 H 0.04 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.36 6.31 7.54 -39.29 -0.30 6.01 16 32 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.37 2.50 9.12 45.56 0.42 2.92 16 35 H 0.14 2.06 7.48 -52.49 -0.39 1.67 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.15 8.04 -52.48 -0.42 0.73 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -33.39 326.31 -7.89 -41.28 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.17 Total: 5.47 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.36 Total: -14.93 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.17 Total: -37.80 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.77 Total: -15.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.39 -7.89 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293843020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.804 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds