Wall clock time and date at job start Mon Mar 30 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00346 * 2 1 4 4 H 1.48501 * 109.47098 * 269.99586 * 3 2 1 5 5 H 1.48497 * 109.47124 * 29.99907 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99838 * 3 2 1 7 7 C 1.37885 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99844 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.46871 * 35.00433 * 14 13 12 16 16 C 1.52994 * 109.47113 * 275.00325 * 14 13 12 17 17 O 1.42902 * 109.47338 * 294.99847 * 16 14 13 18 18 C 1.50696 * 109.46865 * 155.00158 * 14 13 12 19 19 C 1.38236 * 120.00084 * 39.72869 * 18 14 13 20 20 C 1.38238 * 119.99672 * 179.78424 * 19 18 14 21 21 C 1.38233 * 120.00021 * 0.44454 * 20 19 18 22 22 C 1.38229 * 120.00422 * 359.81015 * 21 20 19 23 23 C 1.38236 * 119.99673 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99079 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 26 26 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 27 27 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 28 28 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 29 29 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 30 30 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 31 31 H 1.00899 * 111.00283 * 303.95539 * 13 12 11 32 32 H 1.08998 * 109.47596 * 55.00036 * 16 14 13 33 33 H 1.09007 * 109.47272 * 175.00278 * 16 14 13 34 34 H 0.96703 * 114.00717 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.99920 * 359.97438 * 19 18 14 36 36 H 1.08000 * 120.00080 * 180.27111 * 20 19 18 37 37 H 1.08008 * 119.99616 * 179.83314 * 21 20 19 38 38 H 1.07997 * 120.00524 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.99891 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 3.9877 -2.5416 0.0010 11 6 5.4122 -2.6545 0.0009 12 6 5.8067 -4.1328 0.0015 13 7 5.3672 -4.7572 -1.2535 14 6 5.7293 -6.1805 -1.2883 15 1 5.6519 -6.5997 -0.2851 16 6 7.1656 -6.3292 -1.7938 17 8 7.2414 -5.8866 -3.1504 18 6 4.7928 -6.9145 -2.2130 19 6 4.3934 -6.3289 -3.3998 20 6 3.5379 -7.0042 -4.2501 21 6 3.0745 -8.2612 -3.9093 22 6 3.4696 -8.8446 -2.7201 23 6 4.3287 -8.1712 -1.8719 24 1 -0.4849 0.8402 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8751 -0.6807 -0.8888 27 1 5.8151 -2.1710 0.8909 28 1 5.8150 -2.1709 -0.8891 29 1 6.8895 -4.2199 0.0910 30 1 5.3309 -4.6355 0.8435 31 1 4.3754 -4.6333 -1.3912 32 1 7.8321 -5.7262 -1.1771 33 1 7.4648 -7.3758 -1.7359 34 1 8.1255 -5.9521 -3.5368 35 1 4.7523 -5.3452 -3.6641 36 1 3.2293 -6.5486 -5.1794 37 1 2.4039 -8.7876 -4.5725 38 1 3.1079 -9.8268 -2.4540 39 1 4.6377 -8.6272 -0.9429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293843020.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:21 Heat of formation + Delta-G solvation = -94.638751 kcal Electronic energy + Delta-G solvation = -19709.227221 eV Core-core repulsion = 16615.731176 eV Total energy + Delta-G solvation = -3093.496045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51049 -38.92443 -37.92693 -36.19833 -34.85492 -32.90640 -31.72050 -30.54274 -29.29712 -27.85803 -24.27475 -23.96479 -23.52965 -22.50263 -21.19538 -19.08243 -18.33459 -17.96706 -17.43859 -16.90562 -16.62106 -16.43166 -15.93377 -15.54228 -15.52000 -15.01170 -14.67216 -14.39599 -14.31182 -14.04957 -13.83172 -13.51114 -13.22725 -13.13011 -12.70151 -12.62472 -12.50273 -11.96723 -11.83516 -11.82517 -11.62860 -11.36449 -10.93410 -10.74868 -10.36180 -9.74662 -9.58385 -9.34759 -8.38199 -6.46122 0.47786 0.58833 1.32827 1.35930 1.46665 2.28813 2.90931 2.94615 3.07713 3.18838 3.48173 3.81254 4.08534 4.15967 4.21304 4.31359 4.35484 4.42556 4.50397 4.53818 4.56962 4.65039 4.67000 4.76991 4.80909 4.86219 4.91409 5.01575 5.14746 5.24989 5.42831 5.59163 5.68819 5.71703 5.92505 6.14097 6.20736 6.32035 6.57671 6.73734 7.08638 7.18419 8.79019 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.004289 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.357786 B = 6527.275562 C = 7335.494227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.029 0.971 9 C 0.182 3.818 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.070 3.930 13 N -0.680 5.680 14 C 0.122 3.878 15 H 0.072 0.928 16 C 0.098 3.902 17 O -0.574 6.574 18 C -0.097 4.097 19 C -0.092 4.092 20 C -0.142 4.142 21 C -0.128 4.128 22 C -0.132 4.132 23 C -0.126 4.126 24 H 0.273 0.727 25 H 0.013 0.987 26 H 0.008 0.992 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.032 0.968 31 H 0.340 0.660 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.060 -15.797 -4.533 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.583 4.583 8 H 0.047 0.953 9 C 0.106 3.894 10 O -0.328 6.328 11 C -0.026 4.026 12 C -0.058 4.058 13 N -0.312 5.312 14 C 0.012 3.988 15 H 0.090 0.910 16 C 0.020 3.980 17 O -0.380 6.380 18 C -0.098 4.098 19 C -0.111 4.111 20 C -0.160 4.160 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.145 4.145 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.159 0.841 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.132 0.868 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.712 -15.536 -4.766 23.310 hybrid contribution -0.231 0.532 0.491 0.760 sum 16.481 -15.004 -4.275 22.694 Atomic orbital electron populations 1.70040 1.08273 1.28774 1.51083 1.25842 0.95793 1.03410 0.93402 0.85598 0.79442 0.77479 0.79749 1.18526 1.19721 1.16855 1.21163 0.90991 0.93796 1.52383 0.95297 1.20275 0.93190 0.80954 0.94935 1.87816 1.21360 1.28318 1.95257 1.22691 0.81754 0.97652 1.00469 1.22048 1.01234 0.92185 0.90383 1.60614 1.22462 1.12978 1.35149 1.20691 0.94127 0.87474 0.96487 0.91023 1.22101 0.94292 0.98010 0.83636 1.86596 1.35991 1.88615 1.26834 1.19909 0.98400 0.95435 0.96025 1.21058 0.96281 0.99816 0.93897 1.21437 0.98282 0.95932 1.00350 1.21451 1.00092 0.95433 0.97643 1.21397 0.98113 1.00920 0.94526 1.21302 0.98208 0.94477 1.00485 0.91795 0.96957 0.97406 0.92200 0.93155 0.87331 0.94928 0.84140 0.92526 0.92225 0.76536 0.86754 0.85436 0.84219 0.83808 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.01 0.81 5.47 84.66 0.46 1.27 16 3 Si 0.96 44.02 27.47 68.60 1.88 45.90 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.55 -33.86 9.99 25.60 0.26 -33.60 16 8 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 9 C 0.18 9.33 4.76 71.24 0.34 9.67 16 10 O -0.41 -19.15 9.85 -148.98 -1.47 -20.62 16 11 C 0.05 1.75 6.28 71.98 0.45 2.20 16 12 C 0.07 1.94 5.90 86.30 0.51 2.45 16 13 N -0.68 -20.25 5.64 -495.44 -2.79 -23.04 16 14 C 0.12 2.92 2.65 44.16 0.12 3.03 16 15 H 0.07 1.54 7.66 -2.39 -0.02 1.52 16 16 C 0.10 1.86 6.79 71.98 0.49 2.34 16 17 O -0.57 -12.36 12.07 -148.98 -1.80 -14.15 16 18 C -0.10 -2.56 4.59 -19.87 -0.09 -2.65 16 19 C -0.09 -2.68 8.00 22.27 0.18 -2.50 16 20 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 21 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 22 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 23 C -0.13 -2.87 9.67 22.27 0.22 -2.65 16 24 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 25 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 26 H 0.01 0.40 7.57 -2.39 -0.02 0.39 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 2.27 7.36 -2.39 -0.02 2.25 16 30 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 31 H 0.34 12.38 7.54 -89.69 -0.68 11.70 16 32 H 0.06 0.93 7.35 -2.39 -0.02 0.91 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.39 4.74 9.12 -74.06 -0.68 4.06 16 35 H 0.11 3.72 7.48 -2.91 -0.02 3.70 16 36 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.14 2.43 8.04 -2.91 -0.02 2.40 16 Total: -1.00 -74.51 326.31 -0.64 -75.15 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.36 Total: 25.72 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.60 Total: -29.13 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.49 Total: -82.86 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -3.26 Total: -34.77 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -74.51 -0.64 -75.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293843020.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.492 kcal (2) G-P(sol) polarization free energy of solvation -74.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds