Wall clock time and date at job start Mon Mar 30 2020 04:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 N 1.46899 * 109.46916 * 240.00259 * 2 1 3 5 5 C 1.46906 * 111.00068 * 298.10509 * 4 2 1 6 6 C 1.50696 * 109.47112 * 174.51683 * 5 4 2 7 7 H 1.07999 * 120.00464 * 3.61343 * 6 5 4 8 8 C 1.37873 * 119.99937 * 183.61233 * 6 5 4 9 9 N 1.31522 * 120.00177 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46974 * 90.00104 * 10 8 6 12 12 H 1.48506 * 109.47144 * 210.00220 * 10 8 6 13 13 H 1.48496 * 109.47184 * 330.00064 * 10 8 6 14 14 C 1.37841 * 110.99965 * 174.16111 * 4 2 1 15 15 N 1.32982 * 120.64736 * 63.69490 * 14 4 2 16 16 C 1.31669 * 120.84908 * 179.97438 * 15 14 4 17 17 N 1.31981 * 122.24340 * 0.02562 * 16 15 14 18 18 C 1.32187 * 121.20502 * 0.02562 * 17 16 15 19 19 C 1.39830 * 118.98948 * 359.73955 * 18 17 16 20 20 C 1.47299 * 121.00260 * 180.25237 * 19 18 17 21 21 O 1.21518 * 120.00049 * 185.29709 * 20 19 18 22 22 O 1.34759 * 119.99550 * 5.30442 * 20 19 18 23 23 H 1.08999 * 109.47221 * 65.14650 * 1 2 3 24 24 H 1.08998 * 109.47511 * 185.14647 * 1 2 3 25 25 H 1.08996 * 109.47432 * 305.14790 * 1 2 3 26 26 H 1.08993 * 109.47035 * 120.00298 * 2 1 3 27 27 H 1.08995 * 109.47156 * 60.66725 * 3 2 1 28 28 H 1.08996 * 109.47350 * 180.67293 * 3 2 1 29 29 H 1.09003 * 109.47058 * 300.67314 * 3 2 1 30 30 H 1.08994 * 109.47347 * 294.52396 * 5 4 2 31 31 H 1.09006 * 109.46669 * 54.51975 * 5 4 2 32 32 H 0.96997 * 120.00271 * 179.97438 * 9 8 6 33 33 H 1.08005 * 118.88040 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.50668 * 180.02562 * 18 17 16 35 35 H 0.96706 * 117.00161 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.5859 -2.0960 -1.2110 6 6 1.9899 -2.7359 -2.5142 7 1 2.5669 -2.1755 -3.2350 8 6 1.6230 -4.0367 -2.7864 9 7 0.9200 -4.7190 -1.9089 10 14 2.1244 -4.8301 -4.4015 11 1 3.4405 -5.4981 -4.2372 12 1 1.1050 -5.8352 -4.7967 13 1 2.2261 -3.7880 -5.4544 14 6 3.3912 -0.5986 -1.2987 15 7 4.1768 -1.1494 -0.3779 16 6 5.4874 -1.0626 -0.4691 17 7 6.0839 -0.4332 -1.4640 18 6 5.3851 0.1458 -2.4252 19 6 3.9890 0.0805 -2.3815 20 6 3.1671 0.7052 -3.4321 21 8 1.9565 0.7214 -3.3273 22 8 3.7576 1.2586 -4.5096 23 1 -0.3633 0.4319 -0.9325 24 1 -0.3634 -1.0235 0.0922 25 1 -0.3634 0.5916 0.8402 26 1 1.8933 -0.5138 0.8899 27 1 1.6865 1.9528 0.8959 28 1 3.1299 1.4425 -0.0121 29 1 1.6668 1.9598 -0.8839 30 1 2.0555 -2.6282 -0.3839 31 1 0.5021 -2.1422 -1.1041 32 1 0.6615 -5.6341 -2.1005 33 1 6.0951 -1.5214 0.2969 34 1 5.8850 0.6574 -3.2344 35 1 3.1768 1.6563 -5.1728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304148715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:20 Heat of formation + Delta-G solvation = -22.928853 kcal Electronic energy + Delta-G solvation = -21101.510906 eV Core-core repulsion = 17907.584092 eV Total energy + Delta-G solvation = -3193.926814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02633 -39.18755 -37.68096 -35.50300 -33.21996 -32.95838 -32.12888 -30.41274 -27.37977 -26.29005 -25.17588 -23.73596 -21.98215 -21.49595 -19.89659 -18.01899 -17.18067 -16.84168 -16.59288 -16.00569 -15.61480 -14.94156 -14.60568 -14.38796 -13.79719 -13.65315 -13.53324 -13.11717 -12.35229 -12.15785 -11.89393 -11.67208 -11.60657 -11.25317 -11.10498 -10.94930 -10.78276 -10.70043 -10.46402 -10.23242 -9.99821 -9.86458 -9.39479 -9.10517 -8.99757 -8.51959 -7.64444 -6.10644 -4.11628 0.75053 1.39842 3.02312 3.26514 3.32564 3.32691 3.36856 4.08482 4.13360 4.35232 4.39669 4.59068 5.16489 5.19175 5.27180 5.39567 5.43727 5.69157 5.77576 5.89238 6.00367 6.15347 6.19253 6.28258 6.47910 6.59771 6.78399 6.84714 7.14195 7.17743 7.33046 7.61610 7.95859 8.03993 8.31084 8.34142 8.40295 8.91183 9.51187 10.99987 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.009342 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.281711 B = 2996.560612 C = 3444.589529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 C -0.145 4.145 4 N -0.479 5.479 5 C 0.198 3.802 6 C -0.511 4.511 7 H 0.054 0.946 8 C 0.062 3.938 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.460 3.540 15 N -0.549 5.549 16 C 0.329 3.671 17 N -0.548 5.548 18 C 0.198 3.802 19 C -0.219 4.219 20 C 0.526 3.474 21 O -0.454 6.454 22 O -0.527 6.527 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.194 0.806 34 H 0.176 0.824 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 11.666 0.892 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 C -0.202 4.202 4 N -0.204 5.204 5 C 0.075 3.925 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.140 4.140 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.224 3.776 15 N -0.267 5.267 16 C 0.041 3.959 17 N -0.263 5.263 18 C 0.031 3.969 19 C -0.226 4.226 20 C 0.366 3.634 21 O -0.337 6.337 22 O -0.341 6.341 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.210 0.790 34 H 0.193 0.807 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.742 11.094 1.584 12.592 hybrid contribution -0.251 -0.507 -1.372 1.484 sum 5.491 10.587 0.212 11.928 Atomic orbital electron populations 1.21808 0.93710 1.02473 1.01700 1.21542 0.96299 0.93616 0.90576 1.21903 0.99645 0.96586 1.02094 1.60335 1.02011 1.20328 1.37760 1.19946 0.97314 0.77897 0.97314 1.21016 1.34516 0.97114 1.02265 0.92811 1.24890 0.95068 0.97037 0.97018 1.69935 1.37569 1.10614 1.34895 0.86552 0.78286 0.79202 0.83810 1.20683 1.20887 1.19817 1.20101 0.91518 0.80982 0.85015 1.68867 1.06956 1.20447 1.30398 1.24963 0.88503 0.89184 0.93288 1.68424 1.41304 1.12501 1.04070 1.23508 0.89346 0.89606 0.94413 1.20658 0.95021 1.08556 0.98408 1.20065 0.86527 0.76332 0.80506 1.90984 1.14121 1.52129 1.76460 1.84519 1.45774 1.70876 1.32885 0.91464 0.91777 0.92942 0.93456 0.92321 0.94331 0.91551 0.97300 0.93098 0.92737 0.78973 0.80734 0.73258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.87 37.16 0.33 -2.07 16 2 C 0.09 1.62 2.52 -67.72 -0.17 1.45 16 3 C -0.14 -2.30 8.97 37.16 0.33 -1.96 16 4 N -0.48 -10.60 2.54 -166.56 -0.42 -11.02 16 5 C 0.20 5.18 4.42 -4.97 -0.02 5.15 16 6 C -0.51 -14.55 8.70 -34.44 -0.30 -14.85 16 7 H 0.05 1.56 7.14 -52.49 -0.37 1.19 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.46 9.57 2.60 -154.89 -0.40 9.17 16 15 N -0.55 -10.91 9.75 -13.58 -0.13 -11.04 16 16 C 0.33 5.43 12.26 -92.10 -1.13 4.30 16 17 N -0.55 -8.81 10.41 -14.29 -0.15 -8.96 16 18 C 0.20 3.12 10.89 -16.80 -0.18 2.93 16 19 C -0.22 -4.06 5.64 -104.53 -0.59 -4.65 16 20 C 0.53 9.42 8.26 34.41 0.28 9.70 16 21 O -0.45 -9.47 16.00 -19.28 -0.31 -9.78 16 22 O -0.53 -6.95 12.79 -40.65 -0.52 -7.47 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 1.20 6.60 -51.93 -0.34 0.85 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.91 8.07 -51.93 -0.42 0.50 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.62 7.06 -51.93 -0.37 0.26 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.01 0.26 7.82 -51.93 -0.41 -0.15 16 31 H 0.05 1.40 6.20 -51.93 -0.32 1.08 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.19 2.41 8.06 -52.48 -0.42 1.98 16 34 H 0.18 2.15 7.72 -52.49 -0.40 1.74 16 35 H 0.41 3.53 9.11 45.56 0.42 3.95 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -33.44 302.88 -6.67 -40.11 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.47 Total: 1.32 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -1.95 Total: 10.84 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.03 Total: -56.66 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.83 Total: -17.25 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.44 -6.67 -40.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304148715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.176 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds