Wall clock time and date at job start Mon Mar 30 2020 04:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47203 * 2 1 4 4 N 1.46899 * 109.46916 * 240.00259 * 2 1 3 5 5 C 1.46906 * 111.00068 * 298.10509 * 4 2 1 6 6 C 1.50696 * 109.47112 * 174.51683 * 5 4 2 7 7 H 1.07999 * 120.00464 * 3.61343 * 6 5 4 8 8 C 1.37873 * 119.99937 * 183.61233 * 6 5 4 9 9 N 1.31522 * 120.00177 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00088 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46974 * 90.00104 * 10 8 6 12 12 H 1.48506 * 109.47144 * 210.00220 * 10 8 6 13 13 H 1.48496 * 109.47184 * 330.00064 * 10 8 6 14 14 C 1.37841 * 110.99965 * 174.16111 * 4 2 1 15 15 N 1.32982 * 120.64736 * 63.69490 * 14 4 2 16 16 C 1.31669 * 120.84908 * 179.97438 * 15 14 4 17 17 N 1.31981 * 122.24340 * 0.02562 * 16 15 14 18 18 C 1.32187 * 121.20502 * 0.02562 * 17 16 15 19 19 C 1.39830 * 118.98948 * 359.73955 * 18 17 16 20 20 C 1.47299 * 121.00260 * 180.25237 * 19 18 17 21 21 O 1.21518 * 120.00049 * 185.29709 * 20 19 18 22 22 O 1.34759 * 119.99550 * 5.30442 * 20 19 18 23 23 H 1.08999 * 109.47221 * 65.14650 * 1 2 3 24 24 H 1.08998 * 109.47511 * 185.14647 * 1 2 3 25 25 H 1.08996 * 109.47432 * 305.14790 * 1 2 3 26 26 H 1.08993 * 109.47035 * 120.00298 * 2 1 3 27 27 H 1.08995 * 109.47156 * 60.66725 * 3 2 1 28 28 H 1.08996 * 109.47350 * 180.67293 * 3 2 1 29 29 H 1.09003 * 109.47058 * 300.67314 * 3 2 1 30 30 H 1.08994 * 109.47347 * 294.52396 * 5 4 2 31 31 H 1.09006 * 109.46669 * 54.51975 * 5 4 2 32 32 H 0.96997 * 120.00271 * 179.97438 * 9 8 6 33 33 H 1.08005 * 118.88040 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.50668 * 180.02562 * 18 17 16 35 35 H 0.96706 * 117.00161 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.5859 -2.0960 -1.2110 6 6 1.9899 -2.7359 -2.5142 7 1 2.5669 -2.1755 -3.2350 8 6 1.6230 -4.0367 -2.7864 9 7 0.9200 -4.7190 -1.9089 10 14 2.1244 -4.8301 -4.4015 11 1 3.4405 -5.4981 -4.2372 12 1 1.1050 -5.8352 -4.7967 13 1 2.2261 -3.7880 -5.4544 14 6 3.3912 -0.5986 -1.2987 15 7 4.1768 -1.1494 -0.3779 16 6 5.4874 -1.0626 -0.4691 17 7 6.0839 -0.4332 -1.4640 18 6 5.3851 0.1458 -2.4252 19 6 3.9890 0.0805 -2.3815 20 6 3.1671 0.7052 -3.4321 21 8 1.9565 0.7214 -3.3273 22 8 3.7576 1.2586 -4.5096 23 1 -0.3633 0.4319 -0.9325 24 1 -0.3634 -1.0235 0.0922 25 1 -0.3634 0.5916 0.8402 26 1 1.8933 -0.5138 0.8899 27 1 1.6865 1.9528 0.8959 28 1 3.1299 1.4425 -0.0121 29 1 1.6668 1.9598 -0.8839 30 1 2.0555 -2.6282 -0.3839 31 1 0.5021 -2.1422 -1.1041 32 1 0.6615 -5.6341 -2.1005 33 1 6.0951 -1.5214 0.2969 34 1 5.8850 0.6574 -3.2344 35 1 3.1768 1.6563 -5.1728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304148715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:15 Heat of formation + Delta-G solvation = -46.061769 kcal Electronic energy + Delta-G solvation = -21102.514025 eV Core-core repulsion = 17907.584092 eV Total energy + Delta-G solvation = -3194.929933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.42874 -40.50655 -39.21498 -36.78271 -35.07835 -34.56548 -33.56705 -32.07031 -29.04637 -27.99187 -26.51606 -25.31902 -23.81560 -22.81293 -21.38976 -19.34827 -18.82728 -18.41430 -17.89266 -17.73786 -17.23169 -16.50295 -16.24978 -15.83238 -15.42946 -15.09209 -14.83951 -14.43848 -14.26355 -13.69646 -13.66288 -13.24970 -12.97573 -12.85800 -12.62208 -12.60246 -12.39213 -12.28305 -12.09529 -11.92548 -11.52078 -11.42583 -11.38122 -10.69862 -10.55752 -10.38383 -9.36485 -8.28588 -6.37510 -0.61028 0.00723 1.30961 1.32347 1.43174 1.66871 2.09313 2.30144 2.63180 2.77078 3.05589 3.15181 3.24377 3.78021 3.84490 4.02132 4.03829 4.36634 4.47303 4.63820 4.73585 4.77587 4.79768 4.89604 5.05494 5.16823 5.22617 5.25924 5.34872 5.51636 5.72998 5.86015 5.92598 6.21555 6.44205 6.73022 6.99341 7.17248 7.29754 8.82521 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.009342 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.281711 B = 2996.560612 C = 3444.589529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.079 3.921 3 C -0.129 4.129 4 N -0.484 5.484 5 C 0.220 3.780 6 C -0.522 4.522 7 H 0.045 0.955 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.958 3.042 11 H -0.273 1.273 12 H -0.274 1.274 13 H -0.269 1.269 14 C 0.436 3.564 15 N -0.579 5.579 16 C 0.329 3.671 17 N -0.542 5.542 18 C 0.214 3.786 19 C -0.239 4.239 20 C 0.532 3.468 21 O -0.494 6.494 22 O -0.507 6.507 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.089 0.911 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.060 0.940 30 H -0.024 1.024 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.229 0.771 34 H 0.215 0.785 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 12.792 -0.110 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.028 4.028 3 C -0.186 4.186 4 N -0.209 5.209 5 C 0.095 3.905 6 C -0.561 4.561 7 H 0.064 0.936 8 C -0.188 4.188 9 N -0.563 5.563 10 Si 0.782 3.218 11 H -0.199 1.199 12 H -0.199 1.199 13 H -0.194 1.194 14 C 0.200 3.800 15 N -0.298 5.298 16 C 0.042 3.958 17 N -0.256 5.256 18 C 0.047 3.953 19 C -0.246 4.246 20 C 0.373 3.627 21 O -0.381 6.381 22 O -0.322 6.322 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.079 0.921 30 H -0.006 1.006 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.231 0.769 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 7.476 12.255 0.566 14.366 hybrid contribution -0.686 -0.783 -1.044 1.474 sum 6.790 11.472 -0.478 13.339 Atomic orbital electron populations 1.21750 0.92950 1.01520 1.02685 1.21725 0.97018 0.94983 0.89041 1.21767 0.99138 0.94446 1.03284 1.60219 1.03681 1.17597 1.39368 1.19427 0.95384 0.80376 0.95284 1.21221 1.34503 0.97532 1.02817 0.93643 1.25744 0.95007 0.97589 1.00472 1.70048 1.38508 1.11021 1.36737 0.85557 0.78289 0.78344 0.79581 1.19889 1.19904 1.19365 1.20205 0.90985 0.82515 0.86322 1.68825 1.08468 1.21507 1.30961 1.25691 0.87707 0.88407 0.93994 1.68568 1.40835 1.12226 1.04005 1.24101 0.88190 0.88323 0.94728 1.20843 0.96412 1.09183 0.98191 1.20007 0.85864 0.75766 0.81075 1.90972 1.15683 1.53882 1.77518 1.84449 1.45578 1.70081 1.32091 0.92497 0.94206 0.89248 0.94616 0.89225 0.94878 0.92134 1.00575 0.95514 0.92463 0.75488 0.76901 0.70680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.87 71.98 0.64 -4.00 16 2 C 0.08 3.01 2.52 44.91 0.11 3.12 16 3 C -0.13 -3.98 8.97 71.98 0.65 -3.33 16 4 N -0.48 -22.02 2.54 -680.87 -1.73 -23.75 16 5 C 0.22 12.04 4.42 85.55 0.38 12.41 16 6 C -0.52 -30.52 8.70 25.60 0.22 -30.30 16 7 H 0.05 2.68 7.14 -2.91 -0.02 2.66 16 8 C 0.01 0.64 5.46 84.65 0.46 1.11 16 9 N -0.92 -55.94 13.29 21.45 0.28 -55.66 16 10 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 C 0.44 18.20 2.60 133.77 0.35 18.55 16 15 N -0.58 -23.03 9.75 -196.88 -1.92 -24.95 16 16 C 0.33 10.34 12.26 180.87 2.22 12.56 16 17 N -0.54 -16.02 10.41 -199.11 -2.07 -18.09 16 18 C 0.21 6.14 10.89 85.02 0.93 7.07 16 19 C -0.24 -8.60 5.64 -19.81 -0.11 -8.71 16 20 C 0.53 18.39 8.26 70.21 0.58 18.97 16 21 O -0.49 -20.62 16.00 19.78 0.32 -20.30 16 22 O -0.51 -11.94 12.79 -56.70 -0.73 -12.66 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.04 1.56 6.60 -2.39 -0.02 1.55 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.03 1.04 7.06 -2.39 -0.02 1.02 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H -0.02 -1.41 7.82 -2.39 -0.02 -1.43 16 31 H 0.03 1.57 6.20 -2.38 -0.01 1.56 16 32 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.23 5.17 8.06 -2.91 -0.02 5.15 16 34 H 0.21 4.32 7.72 -2.91 -0.02 4.30 16 35 H 0.43 6.19 9.11 -74.05 -0.67 5.52 16 Total: -1.00 -74.31 302.88 3.05 -71.26 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.45 Total: 9.27 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: 6.42 Total: 27.45 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.44 Total: -122.45 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.41 Total: -32.97 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.31 3.05 -71.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304148715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.203 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds