Wall clock time and date at job start Mon Mar 30 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34767 * 116.99859 * 2 1 4 4 O 1.21514 * 119.99852 * 359.97438 * 3 2 1 5 5 C 1.47299 * 119.99728 * 179.97438 * 3 2 1 6 6 C 1.39835 * 121.00115 * 3.65491 * 5 3 2 7 7 N 1.32187 * 118.98805 * 180.02562 * 6 5 3 8 8 C 1.31979 * 121.20468 * 359.97438 * 7 6 5 9 9 N 1.31665 * 122.24329 * 359.73576 * 8 7 6 10 10 C 1.32983 * 120.84660 * 0.53129 * 9 8 7 11 11 N 1.37842 * 120.64208 * 179.76811 * 10 9 8 12 12 C 1.46909 * 110.99733 * 306.44882 * 11 10 9 13 13 C 1.46902 * 111.00364 * 70.39903 * 11 10 9 14 14 H 1.09005 * 109.46466 * 55.00397 * 13 11 10 15 15 C 1.52992 * 109.47295 * 295.00348 * 13 11 10 16 16 C 1.50696 * 109.46821 * 174.99893 * 13 11 10 17 17 H 1.07997 * 120.00691 * 0.02562 * 16 13 11 18 18 C 1.37887 * 119.99638 * 180.02562 * 16 13 11 19 19 N 1.31507 * 119.99967 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99710 * 180.02562 * 18 16 13 21 21 H 1.48491 * 109.47150 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46868 * 120.00415 * 20 18 16 23 23 H 1.48498 * 109.46598 * 240.00101 * 20 18 16 24 24 H 1.08996 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47313 * 300.00364 * 1 2 3 26 26 H 1.08998 * 109.47159 * 60.00371 * 1 2 3 27 27 H 1.07993 * 120.50465 * 0.03860 * 6 5 3 28 28 H 1.08000 * 118.87655 * 180.02562 * 8 7 6 29 29 H 1.08997 * 109.47203 * 173.84359 * 12 11 10 30 30 H 1.08997 * 109.46542 * 293.84159 * 12 11 10 31 31 H 1.09000 * 109.47139 * 53.83733 * 12 11 10 32 32 H 1.09001 * 109.47380 * 59.99735 * 15 13 11 33 33 H 1.09004 * 109.47064 * 179.97438 * 15 13 11 34 34 H 1.09004 * 109.47587 * 299.99995 * 15 13 11 35 35 H 0.97001 * 120.00284 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5347 1.2779 0.0006 6 6 4.3166 0.1210 -0.0753 7 7 5.6334 0.2363 -0.0713 8 6 6.2160 1.4183 0.0021 9 7 5.5269 2.5382 0.0697 10 6 4.1972 2.5212 0.0771 11 7 3.4800 3.6959 0.1528 12 6 3.9089 4.5013 1.3041 13 6 3.5907 4.4617 -1.0959 14 1 3.2846 3.8359 -1.9342 15 6 5.0410 4.9066 -1.2944 16 6 2.6989 5.6742 -1.0221 17 1 2.1091 5.8578 -0.1362 18 6 2.6358 6.5493 -2.0859 19 7 3.3535 6.3255 -3.1649 20 14 1.5308 8.0526 -1.9943 21 1 0.8343 8.0759 -0.6830 22 1 2.3529 9.2808 -2.1395 23 1 0.5272 7.9966 -3.0874 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.8517 -0.8518 -0.1364 28 1 7.2949 1.4689 0.0022 29 1 3.4064 5.4682 1.2786 30 1 3.6509 3.9820 2.2270 31 1 4.9877 4.6512 1.2610 32 1 5.6861 4.0296 -1.3477 33 1 5.1232 5.4745 -2.2212 34 1 5.3472 5.5324 -0.4561 35 1 3.3089 6.9408 -3.9134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304182627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:39 Heat of formation + Delta-G solvation = -0.443848 kcal Electronic energy + Delta-G solvation = -20745.303196 eV Core-core repulsion = 17552.351405 eV Total energy + Delta-G solvation = -3192.951791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12449 -39.58414 -37.46758 -35.92320 -33.37171 -32.72234 -31.48395 -28.77905 -27.66845 -25.83263 -25.32973 -24.75687 -22.89019 -21.18430 -20.07336 -17.96636 -17.27643 -16.73471 -16.29596 -16.20557 -16.01126 -15.21548 -14.43030 -14.20087 -13.87756 -13.63306 -13.43013 -12.96874 -12.85346 -12.23479 -12.00912 -11.48362 -11.31210 -11.21505 -10.92511 -10.90490 -10.70222 -10.52378 -10.38493 -10.15104 -9.94739 -9.89570 -9.31129 -9.26255 -8.70764 -8.40554 -7.60780 -6.03532 -4.07241 0.61084 1.23740 2.85695 2.91967 3.30069 3.37508 3.42782 3.96007 4.10668 4.22515 4.43683 4.48353 4.93147 5.22400 5.24377 5.29891 5.32933 5.41111 5.57012 5.67464 6.04780 6.30095 6.35924 6.57725 6.64113 6.84265 6.98257 7.03153 7.13749 7.40757 7.61572 7.78273 7.93375 8.13961 8.23299 8.26983 8.46942 8.95933 9.56273 11.03727 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.007398 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.564543 B = 3783.829308 C = 4753.448706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.369 6.369 3 C 0.503 3.497 4 O -0.439 6.439 5 C -0.219 4.219 6 C 0.200 3.800 7 N -0.546 5.546 8 C 0.323 3.677 9 N -0.540 5.540 10 C 0.427 3.573 11 N -0.479 5.479 12 C 0.037 3.963 13 C 0.226 3.774 14 H 0.036 0.964 15 C -0.171 4.171 16 C -0.496 4.496 17 H 0.067 0.933 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.178 0.822 28 H 0.195 0.805 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 -12.026 6.468 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.288 6.288 3 C 0.343 3.657 4 O -0.321 6.321 5 C -0.227 4.227 6 C 0.033 3.967 7 N -0.261 5.261 8 C 0.035 3.965 9 N -0.259 5.259 10 C 0.190 3.810 11 N -0.202 5.202 12 C -0.110 4.110 13 C 0.123 3.877 14 H 0.054 0.946 15 C -0.230 4.230 16 C -0.534 4.534 17 H 0.085 0.915 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.195 0.805 28 H 0.211 0.789 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.695 -11.617 6.347 13.256 hybrid contribution -0.799 0.997 -0.262 1.304 sum -0.104 -10.620 6.085 12.240 Atomic orbital electron populations 1.23176 0.76309 1.03079 1.02757 1.86486 1.23304 1.33337 1.85649 1.20424 0.88111 0.81793 0.75410 1.91029 1.65349 1.34811 1.40895 1.20732 0.92318 0.95570 1.14117 1.23540 0.88876 0.98163 0.86076 1.68444 1.11554 1.28828 1.17226 1.25083 1.01310 0.82754 0.87364 1.69187 1.08654 1.31923 1.16112 1.20712 0.86226 0.92743 0.81324 1.60435 1.48300 1.03613 1.07838 1.22290 0.99494 0.98753 0.90446 1.19377 0.93583 0.91866 0.82911 0.94639 1.22510 0.97461 0.99953 1.03108 1.21036 1.24378 1.05860 1.02142 0.91458 1.24911 0.95899 0.98228 0.95210 1.69905 1.40516 1.37441 1.05423 0.86389 0.80312 0.82267 0.78158 1.19633 1.21107 1.21055 0.88473 0.92009 0.91818 0.80523 0.78859 0.89130 0.93919 0.94136 0.95121 0.89570 0.94807 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.57 101.05 1.07 1.52 16 2 O -0.37 -5.28 9.92 -40.67 -0.40 -5.68 16 3 C 0.50 9.07 7.90 34.41 0.27 9.34 16 4 O -0.44 -9.55 14.99 -19.28 -0.29 -9.84 16 5 C -0.22 -3.89 5.92 -104.54 -0.62 -4.51 16 6 C 0.20 2.89 10.89 -16.80 -0.18 2.70 16 7 N -0.55 -7.99 10.41 -14.29 -0.15 -8.14 16 8 C 0.32 4.83 12.26 -92.11 -1.13 3.70 16 9 N -0.54 -9.94 6.93 -13.59 -0.09 -10.03 16 10 C 0.43 8.58 5.25 -154.89 -0.81 7.77 16 11 N -0.48 -10.85 2.85 -174.32 -0.50 -11.35 16 12 C 0.04 0.76 8.60 60.07 0.52 1.27 16 13 C 0.23 5.85 2.31 -68.87 -0.16 5.69 16 14 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 15 C -0.17 -4.23 8.06 37.15 0.30 -3.93 16 16 C -0.50 -13.73 7.80 -34.44 -0.27 -14.00 16 17 H 0.07 1.87 6.82 -52.49 -0.36 1.52 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.18 1.94 7.71 -52.49 -0.40 1.54 16 28 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.93 6.28 -51.93 -0.33 1.61 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.81 6.29 -51.93 -0.33 0.48 16 32 H 0.03 0.70 5.72 -51.93 -0.30 0.41 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 34 H 0.03 0.81 6.62 -51.93 -0.34 0.46 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 294.69 15.07 4.44 4.44 Total: -1.00 -31.80 294.69 -6.54 -38.34 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.04 Total: -0.35 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -1.11 Total: 11.09 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.11 Total: -54.55 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.69 Total: -15.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.80 -6.54 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304182627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.896 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds