Wall clock time and date at job start Mon Mar 30 2020 04:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.50704 * 109.47130 * 240.00308 * 2 1 3 5 5 H 1.07990 * 120.00040 * 239.99870 * 4 2 1 6 6 C 1.37880 * 119.99954 * 59.99854 * 4 2 1 7 7 N 1.31519 * 119.99939 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47462 * 59.99602 * 8 6 4 10 10 H 1.48504 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47129 * 299.99853 * 8 6 4 12 12 N 1.46898 * 109.47265 * 120.00076 * 2 1 3 13 13 C 1.46903 * 110.99884 * 176.04469 * 12 2 1 14 14 C 1.39173 * 110.99736 * 300.00212 * 12 2 1 15 15 C 1.38956 * 120.52803 * 299.99612 * 14 12 2 16 16 N 1.31711 * 120.87273 * 180.02562 * 15 14 12 17 17 C 1.32384 * 122.10426 * 0.02562 * 16 15 14 18 18 N 1.39373 * 119.53025 * 180.02562 * 17 16 15 19 19 C 1.38762 * 120.94442 * 0.02562 * 17 16 15 20 20 C 1.39857 * 119.01145 * 0.25517 * 19 17 16 21 21 C 1.47642 * 120.93890 * 179.71910 * 20 19 17 22 22 O 1.21486 * 119.99642 * 179.97438 * 21 20 19 23 23 O 1.34721 * 120.00120 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47309 * 60.00106 * 1 2 3 25 25 H 1.09000 * 109.46718 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47078 * 300.00132 * 1 2 3 27 27 H 0.97004 * 119.99404 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.46682 * 183.95417 * 13 12 2 29 29 H 1.09000 * 109.46934 * 303.95504 * 13 12 2 30 30 H 1.08999 * 109.46766 * 63.95680 * 13 12 2 31 31 H 1.08002 * 119.56049 * 0.02693 * 15 14 12 32 32 H 0.97001 * 120.00295 * 179.97438 * 18 17 16 33 33 H 0.97003 * 119.99646 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.48891 * 179.97438 * 19 17 16 35 35 H 0.96702 * 117.00063 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4852 -0.7945 1.1869 14 6 1.5734 -0.0614 2.3568 15 6 1.9061 1.2635 2.6114 16 7 1.4879 1.8672 3.7047 17 6 0.7392 1.2511 4.6061 18 7 0.3259 1.9419 5.7439 19 6 0.3599 -0.0725 4.4343 20 6 0.7851 -0.7571 3.2912 21 6 0.4117 -2.1680 3.0685 22 8 0.7902 -2.7460 2.0692 23 8 -0.3495 -2.8142 3.9730 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7089 1.1615 -3.4844 28 1 3.8164 -1.3721 2.0498 29 1 3.8070 -1.2915 0.2717 30 1 3.9192 0.2044 1.2300 31 1 2.5157 1.8053 1.9034 32 1 -0.2231 1.4973 6.4085 33 1 0.5874 2.8673 5.8711 34 1 -0.2507 -0.5681 5.1746 35 1 -0.5684 -3.7369 3.7835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304189355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:48 Heat of formation + Delta-G solvation = -25.751538 kcal Electronic energy + Delta-G solvation = -20652.533674 eV Core-core repulsion = 17458.484459 eV Total energy + Delta-G solvation = -3194.049215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.54153 -39.11779 -37.20306 -35.52439 -34.03867 -32.73559 -32.16824 -29.26942 -28.18628 -25.38839 -24.87105 -24.23378 -22.64780 -20.91261 -19.79265 -18.13553 -17.43248 -16.87547 -16.20460 -15.61468 -15.31558 -15.20191 -14.75184 -14.74126 -14.01190 -13.96185 -13.49421 -12.91044 -12.79784 -12.44657 -12.22881 -11.66865 -11.16722 -11.00250 -10.84882 -10.69003 -10.45088 -10.22504 -10.17945 -10.05445 -9.91464 -9.59343 -9.51502 -8.92970 -8.39977 -7.51219 -7.18913 -5.98919 -4.02847 0.95730 1.53713 3.08384 3.26505 3.35381 3.39334 3.43138 3.60554 4.14220 4.42254 4.69687 4.89077 5.17361 5.32652 5.46066 5.54653 5.84213 5.89770 6.08581 6.25224 6.34182 6.68052 6.76740 6.80579 6.84174 7.07668 7.14839 7.31860 7.47085 7.50316 7.78294 7.86573 8.14728 8.30809 8.34618 8.35946 8.65331 9.01950 9.61301 11.08007 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.006430 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.139176 B = 4353.348679 C = 4915.625868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.220 3.780 3 H 0.004 0.996 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.489 5.489 13 C 0.045 3.955 14 C 0.081 3.919 15 C 0.113 3.887 16 N -0.515 5.515 17 C 0.373 3.627 18 N -0.859 5.859 19 C -0.184 4.184 20 C -0.031 4.031 21 C 0.511 3.489 22 O -0.445 6.445 23 O -0.527 6.527 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.000 1.000 27 H 0.261 0.739 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.016 0.984 31 H 0.162 0.838 32 H 0.405 0.595 33 H 0.401 0.599 34 H 0.140 0.860 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -1.177 15.342 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.117 3.883 3 H 0.021 0.979 4 C -0.539 4.539 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.211 5.211 13 C -0.101 4.101 14 C -0.019 4.019 15 C -0.048 4.048 16 N -0.233 5.233 17 C 0.138 3.862 18 N -0.405 5.405 19 C -0.210 4.210 20 C -0.041 4.041 21 C 0.351 3.649 22 O -0.327 6.327 23 O -0.340 6.340 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.034 0.966 31 H 0.179 0.821 32 H 0.234 0.766 33 H 0.230 0.770 34 H 0.158 0.842 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.197 -0.490 15.028 15.083 hybrid contribution -0.035 -0.841 -0.802 1.162 sum -1.232 -1.331 14.226 14.341 Atomic orbital electron populations 1.21776 0.97647 0.99718 0.99593 1.19364 0.92451 0.91675 0.84857 0.97872 1.21075 1.31109 1.12293 0.89414 0.91606 1.24919 0.95209 0.95082 0.98990 1.69889 1.36880 1.23020 1.23555 0.86550 0.79043 0.79782 0.81964 1.20223 1.21427 1.20303 1.59644 1.09870 1.51645 0.99931 1.22242 0.86581 0.99058 1.02249 1.19762 0.96890 0.91692 0.93561 1.23203 0.96514 0.92431 0.92608 1.66827 1.13803 1.39003 1.03663 1.18141 0.91762 0.88332 0.87979 1.42107 1.60503 1.16000 1.21886 1.21506 1.05641 0.94142 0.99679 1.19193 0.99143 0.90792 0.94968 1.20593 0.76399 0.87189 0.80702 1.91042 1.48806 1.66633 1.26220 1.84542 1.66672 1.31490 1.51293 0.89494 0.94535 0.98088 0.92918 0.93830 0.89515 0.96552 0.82084 0.76571 0.76978 0.84192 0.73426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.85 37.16 0.33 -2.99 16 2 C 0.22 5.61 1.84 -68.86 -0.13 5.49 16 3 H 0.00 0.10 7.13 -51.93 -0.37 -0.27 16 4 C -0.50 -13.77 7.88 -34.44 -0.27 -14.04 16 5 H 0.07 1.81 6.40 -52.49 -0.34 1.48 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.49 -10.88 2.70 -172.26 -0.47 -11.35 16 13 C 0.05 0.91 9.11 60.07 0.55 1.45 16 14 C 0.08 1.60 3.33 -83.35 -0.28 1.32 16 15 C 0.11 2.10 9.75 -17.34 -0.17 1.93 16 16 N -0.52 -8.75 10.35 -12.26 -0.13 -8.87 16 17 C 0.37 5.43 7.74 -154.81 -1.20 4.23 16 18 N -0.86 -8.62 9.09 31.13 0.28 -8.34 16 19 C -0.18 -2.69 9.52 -38.78 -0.37 -3.05 16 20 C -0.03 -0.55 5.92 -104.54 -0.62 -1.17 16 21 C 0.51 8.96 8.29 34.57 0.29 9.24 16 22 O -0.44 -9.44 15.95 -19.25 -0.31 -9.75 16 23 O -0.53 -6.74 12.78 -40.55 -0.52 -7.26 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 25 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.00 0.00 7.22 -51.93 -0.37 -0.37 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.83 6.10 -51.93 -0.32 1.52 16 30 H 0.02 0.30 7.36 -51.93 -0.38 -0.08 16 31 H 0.16 2.96 7.02 -52.49 -0.37 2.59 16 32 H 0.40 2.86 8.82 -40.82 -0.36 2.50 16 33 H 0.40 3.61 8.95 -40.82 -0.37 3.24 16 34 H 0.14 1.65 7.71 -52.49 -0.40 1.24 16 35 H 0.41 3.38 9.11 45.56 0.42 3.80 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -32.77 297.07 -6.17 -38.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.16 Total: 6.63 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.96 Total: 3.97 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.32 Total: -53.50 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.83 Total: -17.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.77 -6.17 -38.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304189355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.189 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds