Wall clock time and date at job start Mon Mar 30 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47080 * 2 1 4 4 C 1.50704 * 109.47130 * 240.00308 * 2 1 3 5 5 H 1.07990 * 120.00040 * 239.99870 * 4 2 1 6 6 C 1.37880 * 119.99954 * 59.99854 * 4 2 1 7 7 N 1.31519 * 119.99939 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47462 * 59.99602 * 8 6 4 10 10 H 1.48504 * 109.47168 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47129 * 299.99853 * 8 6 4 12 12 N 1.46898 * 109.47265 * 120.00076 * 2 1 3 13 13 C 1.46903 * 110.99884 * 176.04469 * 12 2 1 14 14 C 1.39173 * 110.99736 * 300.00212 * 12 2 1 15 15 C 1.38956 * 120.52803 * 299.99612 * 14 12 2 16 16 N 1.31711 * 120.87273 * 180.02562 * 15 14 12 17 17 C 1.32384 * 122.10426 * 0.02562 * 16 15 14 18 18 N 1.39373 * 119.53025 * 180.02562 * 17 16 15 19 19 C 1.38762 * 120.94442 * 0.02562 * 17 16 15 20 20 C 1.39857 * 119.01145 * 0.25517 * 19 17 16 21 21 C 1.47642 * 120.93890 * 179.71910 * 20 19 17 22 22 O 1.21486 * 119.99642 * 179.97438 * 21 20 19 23 23 O 1.34721 * 120.00120 * 0.02562 * 21 20 19 24 24 H 1.09003 * 109.47309 * 60.00106 * 1 2 3 25 25 H 1.09000 * 109.46718 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47078 * 300.00132 * 1 2 3 27 27 H 0.97004 * 119.99404 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.46682 * 183.95417 * 13 12 2 29 29 H 1.09000 * 109.46934 * 303.95504 * 13 12 2 30 30 H 1.08999 * 109.46766 * 63.95680 * 13 12 2 31 31 H 1.08002 * 119.56049 * 0.02693 * 15 14 12 32 32 H 0.97001 * 120.00295 * 179.97438 * 18 17 16 33 33 H 0.97003 * 119.99646 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.48891 * 179.97438 * 19 17 16 35 35 H 0.96702 * 117.00063 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 3.4852 -0.7945 1.1869 14 6 1.5734 -0.0614 2.3568 15 6 1.9061 1.2635 2.6114 16 7 1.4879 1.8672 3.7047 17 6 0.7392 1.2511 4.6061 18 7 0.3259 1.9419 5.7439 19 6 0.3599 -0.0725 4.4343 20 6 0.7851 -0.7571 3.2912 21 6 0.4117 -2.1680 3.0685 22 8 0.7902 -2.7460 2.0692 23 8 -0.3495 -2.8142 3.9730 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7089 1.1615 -3.4844 28 1 3.8164 -1.3721 2.0498 29 1 3.8070 -1.2915 0.2717 30 1 3.9192 0.2044 1.2300 31 1 2.5157 1.8053 1.9034 32 1 -0.2231 1.4973 6.4085 33 1 0.5874 2.8673 5.8711 34 1 -0.2507 -0.5681 5.1746 35 1 -0.5684 -3.7369 3.7835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304189355.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:47 Heat of formation + Delta-G solvation = -50.149451 kcal Electronic energy + Delta-G solvation = -20653.591647 eV Core-core repulsion = 17458.484459 eV Total energy + Delta-G solvation = -3195.107188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87898 -40.40775 -38.75618 -36.80255 -35.44414 -34.43670 -33.54876 -31.22506 -29.57081 -27.23295 -26.29169 -25.87846 -24.18378 -22.29191 -21.46568 -19.34317 -18.74985 -18.29487 -17.85078 -17.27702 -16.74924 -16.52158 -16.37761 -15.89756 -15.63903 -15.28319 -14.98382 -14.72278 -14.14551 -13.98494 -13.86749 -13.47329 -12.96337 -12.68651 -12.62030 -12.40399 -12.17305 -12.07492 -12.00098 -11.58089 -11.43309 -11.05468 -10.91373 -10.81615 -10.49426 -8.86939 -8.68661 -8.09580 -6.20567 -0.35487 0.21791 1.43664 1.46123 1.53501 1.76342 2.07317 2.43769 2.57645 2.84349 3.15956 3.23629 3.56252 3.99736 4.13886 4.30700 4.49867 4.55134 4.66630 4.70218 4.80164 4.96422 5.00880 5.08736 5.20961 5.41569 5.46162 5.71686 5.72449 5.81574 6.24575 6.32161 6.36089 6.49796 6.87725 6.90845 7.16740 7.29886 7.47413 8.96319 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024192 B = 0.006430 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.139176 B = 4353.348679 C = 4915.625868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.228 3.772 3 H -0.022 1.022 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.493 5.493 13 C 0.049 3.951 14 C 0.044 3.956 15 C 0.108 3.892 16 N -0.529 5.529 17 C 0.379 3.621 18 N -0.834 5.834 19 C -0.164 4.164 20 C -0.044 4.044 21 C 0.519 3.481 22 O -0.492 6.492 23 O -0.506 6.506 24 H 0.063 0.937 25 H 0.021 0.979 26 H 0.011 0.989 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.149 0.851 32 H 0.423 0.577 33 H 0.410 0.590 34 H 0.177 0.823 35 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -1.532 17.547 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 H -0.004 1.004 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.215 5.215 13 C -0.098 4.098 14 C -0.056 4.056 15 C -0.052 4.052 16 N -0.248 5.248 17 C 0.141 3.859 18 N -0.381 5.381 19 C -0.190 4.190 20 C -0.054 4.054 21 C 0.361 3.639 22 O -0.378 6.378 23 O -0.320 6.320 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.167 0.833 32 H 0.256 0.744 33 H 0.241 0.759 34 H 0.195 0.805 35 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -1.881 -0.848 17.310 17.433 hybrid contribution 0.076 -0.698 -1.221 1.408 sum -1.805 -1.546 16.089 16.264 Atomic orbital electron populations 1.21510 0.97993 0.98338 0.98852 1.19080 0.92046 0.90410 0.86171 1.00420 1.21341 1.31148 1.12203 0.90704 0.92283 1.25681 0.95370 0.95752 1.01777 1.70011 1.37747 1.24157 1.24132 0.85575 0.78887 0.78448 0.78482 1.20203 1.20874 1.19345 1.59460 1.10687 1.51553 0.99806 1.22201 0.86029 0.99456 1.02087 1.19760 0.99569 0.92598 0.93698 1.22932 0.96985 0.92053 0.93242 1.66846 1.14939 1.39208 1.03806 1.18455 0.90474 0.88678 0.88321 1.42099 1.59304 1.16299 1.20419 1.21818 1.04394 0.93872 0.98874 1.19351 0.99053 0.91324 0.95635 1.20583 0.75889 0.87133 0.80344 1.91031 1.50900 1.67632 1.28280 1.84469 1.65076 1.33139 1.49364 0.91839 0.95968 0.96967 0.92897 0.91950 0.91300 0.95991 0.83335 0.74368 0.75939 0.80543 0.70843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 8.85 71.98 0.64 -5.12 16 2 C 0.23 12.05 1.84 44.17 0.08 12.13 16 3 H -0.02 -1.22 7.13 -2.39 -0.02 -1.24 16 4 C -0.52 -29.23 7.88 25.60 0.20 -29.03 16 5 H 0.06 3.36 6.40 -2.92 -0.02 3.34 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 8 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.49 -22.54 2.70 -698.90 -1.89 -24.43 16 13 C 0.05 2.01 9.11 127.69 1.16 3.17 16 14 C 0.04 1.74 3.33 38.74 0.13 1.86 16 15 C 0.11 4.02 9.75 84.88 0.83 4.85 16 16 N -0.53 -17.25 10.35 -192.71 -1.99 -19.25 16 17 C 0.38 9.87 7.74 132.85 1.03 10.89 16 18 N -0.83 -13.29 9.09 -55.44 -0.50 -13.79 16 19 C -0.16 -4.23 9.52 22.79 0.22 -4.01 16 20 C -0.04 -1.49 5.92 -19.81 -0.12 -1.60 16 21 C 0.52 17.42 8.29 70.31 0.58 18.00 16 22 O -0.49 -20.89 15.95 19.88 0.32 -20.57 16 23 O -0.51 -11.34 12.78 -56.31 -0.72 -12.05 16 24 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.01 0.57 7.22 -2.39 -0.02 0.55 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 3.02 6.10 -2.39 -0.01 3.01 16 30 H 0.02 0.85 7.36 -2.39 -0.02 0.83 16 31 H 0.15 5.75 7.02 -2.91 -0.02 5.73 16 32 H 0.42 3.85 8.82 -92.71 -0.82 3.04 16 33 H 0.41 5.80 8.95 -92.71 -0.83 4.97 16 34 H 0.18 3.20 7.71 -2.91 -0.02 3.18 16 35 H 0.43 5.79 9.11 -74.06 -0.67 5.12 16 Total: -1.00 -72.38 297.07 1.52 -70.86 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -1.15 Total: 13.80 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.20 Total: 12.32 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.15 Total: -111.13 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.40 Total: -32.63 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.38 1.52 -70.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304189355.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.709 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds