Wall clock time and date at job start Mon Mar 30 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99690 * 3 2 1 5 5 H 1.48501 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 119.99998 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.52999 * 109.47328 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47323 * 305.00118 * 13 12 11 15 15 O 1.42902 * 109.46885 * 65.00056 * 13 12 11 16 16 C 1.52995 * 109.47250 * 184.99791 * 13 12 11 17 17 O 1.42901 * 109.47204 * 175.00258 * 16 13 12 18 18 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 19 19 C 1.38915 * 120.06984 * 0.02562 * 18 10 9 20 20 C 1.38104 * 119.92359 * 179.97438 * 19 18 10 21 21 C 1.38288 * 120.07208 * 359.97438 * 20 19 18 22 22 C 1.38290 * 120.15288 * 0.02562 * 21 20 19 23 23 C 1.38100 * 120.07105 * 359.97438 * 22 21 20 24 24 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 26 26 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 27 27 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 28 28 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 29 29 H 1.08995 * 109.46987 * 299.99935 * 12 11 10 30 30 H 1.09000 * 109.47190 * 59.99497 * 12 11 10 31 31 H 0.96699 * 114.00298 * 59.99703 * 15 13 12 32 32 H 1.08997 * 109.47477 * 295.00475 * 16 13 12 33 33 H 1.09001 * 109.46884 * 55.00116 * 16 13 12 34 34 H 0.96697 * 114.00486 * 180.02562 * 17 16 13 35 35 H 1.07998 * 120.03739 * 359.69591 * 19 18 10 36 36 H 1.08001 * 119.96576 * 179.97438 * 20 19 18 37 37 H 1.08007 * 119.92458 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.96314 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.03349 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.2450 -5.8818 -3.0351 14 1 2.3370 -5.0826 -3.7705 15 8 3.5199 -6.4965 -2.8376 16 6 1.2477 -6.9266 -3.5396 17 8 1.6507 -7.3850 -4.8317 18 6 2.6568 -4.1435 1.2102 19 6 2.2061 -3.6170 2.4141 20 6 2.6565 -4.1445 3.6083 21 6 3.5547 -5.1960 3.6065 22 6 4.0054 -5.7225 2.4098 23 6 3.5591 -5.1997 1.2120 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.6867 -3.3879 -2.0278 28 1 3.6885 -4.5594 -1.1379 29 1 1.7405 -6.0823 -0.9502 30 1 0.7388 -4.9107 -1.8401 31 1 3.5131 -7.2183 -2.1942 32 1 1.2219 -7.7682 -2.8474 33 1 0.2557 -6.4799 -3.6055 34 1 1.0626 -8.0505 -5.2141 35 1 1.5078 -2.7932 2.4161 36 1 2.3068 -3.7354 4.5447 37 1 3.9050 -5.6070 4.5418 38 1 4.7072 -6.5433 2.4119 39 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310404258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:00 Heat of formation + Delta-G solvation = -77.033642 kcal Electronic energy + Delta-G solvation = -20117.360781 eV Core-core repulsion = 17024.628150 eV Total energy + Delta-G solvation = -3092.732631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.06725 -38.19963 -36.15752 -35.48251 -32.89958 -31.73087 -30.30205 -29.10872 -28.14226 -25.97312 -23.53542 -22.62007 -21.52267 -21.23403 -19.67407 -17.45902 -17.01278 -16.57773 -16.33346 -16.06164 -15.20182 -14.95565 -14.30106 -14.18858 -13.79854 -13.56842 -13.36276 -12.91315 -12.81096 -12.57394 -12.27017 -12.10134 -11.85865 -11.25377 -11.05023 -10.84789 -10.70779 -10.66535 -10.59445 -10.32425 -10.24550 -10.08209 -9.88828 -9.69641 -8.91588 -8.51391 -8.28214 -6.51484 -6.04094 -4.18524 2.09078 2.30984 3.28070 3.32174 3.35907 3.78772 4.21037 4.40494 4.46481 4.58493 4.88837 5.00216 5.20381 5.27647 5.28767 5.37594 5.50439 5.55248 5.67487 5.76960 5.87431 6.00537 6.09117 6.23764 6.30075 6.42617 6.50774 6.63592 6.95951 7.07706 7.17422 7.24605 7.34679 7.43494 7.60531 7.66697 7.80082 8.14422 8.26250 8.47976 8.90551 9.48541 10.94297 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.006512 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.037148 B = 4298.956127 C = 6050.237985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.611 5.611 11 C 0.133 3.867 12 C -0.167 4.167 13 C 0.111 3.889 14 H 0.106 0.894 15 O -0.553 6.553 16 C 0.044 3.956 17 O -0.566 6.566 18 C 0.238 3.762 19 C -0.187 4.187 20 C -0.078 4.078 21 C -0.205 4.205 22 C -0.079 4.079 23 C -0.220 4.220 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.370 0.630 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.375 0.625 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -13.775 -1.633 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.316 5.316 11 C 0.008 3.992 12 C -0.206 4.206 13 C 0.051 3.949 14 H 0.124 0.876 15 O -0.357 6.357 16 C -0.034 4.034 17 O -0.371 6.371 18 C 0.131 3.869 19 C -0.210 4.210 20 C -0.097 4.097 21 C -0.225 4.225 22 C -0.098 4.098 23 C -0.243 4.243 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.216 0.784 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.221 0.779 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.313 -12.649 -2.177 13.042 hybrid contribution -0.378 0.243 0.354 0.573 sum 1.935 -12.405 -1.823 12.687 Atomic orbital electron populations 1.69917 1.05990 1.27240 1.50353 1.24949 0.94846 0.99231 0.94967 0.86585 0.79561 0.82697 0.78803 1.20211 1.21204 1.20105 1.21552 0.93620 0.90701 1.51175 0.92287 1.19254 0.87293 0.82486 0.97885 1.47153 1.47627 1.35616 1.01174 1.21134 0.96521 0.94724 0.86816 1.22705 1.01716 1.00062 0.96158 1.21920 0.82683 0.93891 0.96408 0.87583 1.86627 1.30569 1.52965 1.65565 1.22997 0.98211 0.97368 0.84819 1.86561 1.55096 1.62275 1.33129 1.17948 0.91227 0.90890 0.86792 1.20920 1.05485 1.03720 0.90857 1.20825 0.96252 0.95511 0.97084 1.20664 1.03658 1.01092 0.97128 1.20682 0.98306 0.98504 0.92322 1.20608 1.04212 1.01461 0.98027 0.92609 0.95303 0.94735 0.90635 0.91057 0.91423 0.90502 0.78355 0.93489 0.92654 0.77857 0.85135 0.87165 0.87704 0.87441 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 6.12 4.91 -5.20 -0.03 6.09 16 10 N -0.61 -12.57 2.59 -173.13 -0.45 -13.02 16 11 C 0.13 2.29 5.06 -4.04 -0.02 2.27 16 12 C -0.17 -2.32 5.22 -26.73 -0.14 -2.46 16 13 C 0.11 1.40 3.25 -26.73 -0.09 1.32 16 14 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 15 O -0.55 -7.25 12.84 -40.09 -0.51 -7.76 16 16 C 0.04 0.47 6.68 37.15 0.25 0.71 16 17 O -0.57 -6.37 13.62 -40.09 -0.55 -6.92 16 18 C 0.24 4.73 6.55 -83.78 -0.55 4.18 16 19 C -0.19 -3.79 9.21 -39.38 -0.36 -4.15 16 20 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 21 C -0.20 -3.25 10.04 -39.54 -0.40 -3.65 16 22 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 23 C -0.22 -3.78 9.21 -39.38 -0.36 -4.15 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.03 0.90 6.20 -51.93 -0.32 0.58 16 27 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.07 1.19 5.88 -51.93 -0.31 0.88 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.37 3.53 9.05 45.56 0.41 3.95 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.38 2.36 9.12 45.56 0.42 2.77 16 35 H 0.13 2.90 6.15 -52.49 -0.32 2.58 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -31.03 327.92 -7.97 -39.00 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.21 Total: 8.48 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.91 Total: -16.31 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.29 Total: -37.73 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.06 Total: -14.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.03 -7.97 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310404258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.032 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds