Wall clock time and date at job start Mon Mar 30 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48502 * 109.47087 * 239.99690 * 3 2 1 5 5 H 1.48501 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 119.99998 * 3 2 1 7 7 C 1.37874 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00437 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47360 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00184 * 270.00092 * 10 9 7 12 12 C 1.53001 * 109.47108 * 269.99848 * 11 10 9 13 13 C 1.52999 * 109.47328 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.47323 * 305.00118 * 13 12 11 15 15 O 1.42902 * 109.46885 * 65.00056 * 13 12 11 16 16 C 1.52995 * 109.47250 * 184.99791 * 13 12 11 17 17 O 1.42901 * 109.47204 * 175.00258 * 16 13 12 18 18 C 1.39678 * 120.00138 * 89.99664 * 10 9 7 19 19 C 1.38915 * 120.06984 * 0.02562 * 18 10 9 20 20 C 1.38104 * 119.92359 * 179.97438 * 19 18 10 21 21 C 1.38288 * 120.07208 * 359.97438 * 20 19 18 22 22 C 1.38290 * 120.15288 * 0.02562 * 21 20 19 23 23 C 1.38100 * 120.07105 * 359.97438 * 22 21 20 24 24 H 0.97006 * 120.00477 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47223 * 60.00079 * 9 7 2 26 26 H 1.09004 * 109.47132 * 299.99732 * 9 7 2 27 27 H 1.08995 * 109.47144 * 29.99687 * 11 10 9 28 28 H 1.09000 * 109.47505 * 149.99538 * 11 10 9 29 29 H 1.08995 * 109.46987 * 299.99935 * 12 11 10 30 30 H 1.09000 * 109.47190 * 59.99497 * 12 11 10 31 31 H 0.96699 * 114.00298 * 59.99703 * 15 13 12 32 32 H 1.08997 * 109.47477 * 295.00475 * 16 13 12 33 33 H 1.09001 * 109.46884 * 55.00116 * 16 13 12 34 34 H 0.96697 * 114.00486 * 180.02562 * 17 16 13 35 35 H 1.07998 * 120.03739 * 359.69591 * 19 18 10 36 36 H 1.08001 * 119.96576 * 179.97438 * 20 19 18 37 37 H 1.08007 * 119.92458 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.96314 * 179.97438 * 22 21 20 39 39 H 1.08007 * 120.03349 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2682 12 6 1.7483 -5.3007 -1.7098 13 6 2.2450 -5.8818 -3.0351 14 1 2.3370 -5.0826 -3.7705 15 8 3.5199 -6.4965 -2.8376 16 6 1.2477 -6.9266 -3.5396 17 8 1.6507 -7.3850 -4.8317 18 6 2.6568 -4.1435 1.2102 19 6 2.2061 -3.6170 2.4141 20 6 2.6565 -4.1445 3.6083 21 6 3.5547 -5.1960 3.6065 22 6 4.0054 -5.7225 2.4098 23 6 3.5591 -5.1997 1.2120 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.6867 -3.3879 -2.0278 28 1 3.6885 -4.5594 -1.1379 29 1 1.7405 -6.0823 -0.9502 30 1 0.7388 -4.9107 -1.8401 31 1 3.5131 -7.2183 -2.1942 32 1 1.2219 -7.7682 -2.8474 33 1 0.2557 -6.4799 -3.6055 34 1 1.0626 -8.0505 -5.2141 35 1 1.5078 -2.7932 2.4161 36 1 2.3068 -3.7354 4.5447 37 1 3.9050 -5.6070 4.5418 38 1 4.7072 -6.5433 2.4119 39 1 3.9118 -5.6111 0.2777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310404258.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:00 Heat of formation + Delta-G solvation = -99.415375 kcal Electronic energy + Delta-G solvation = -20118.331326 eV Core-core repulsion = 17024.628150 eV Total energy + Delta-G solvation = -3093.703175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44824 -39.23445 -37.34952 -36.66321 -34.86497 -33.02491 -31.67566 -30.59656 -29.56503 -27.52267 -25.14546 -24.06125 -22.75592 -22.46993 -21.15186 -18.67961 -18.38320 -18.23815 -17.46331 -17.10104 -16.83158 -16.40416 -15.92081 -15.42527 -15.05047 -14.86974 -14.69088 -14.28555 -14.22084 -13.82571 -13.66852 -13.55092 -13.16616 -13.11135 -12.86966 -12.52441 -12.30387 -12.05410 -11.92116 -11.83096 -11.71608 -11.36479 -11.08044 -10.94430 -10.64038 -10.47491 -9.65318 -8.37643 -7.83028 -6.37453 0.71529 0.93335 1.36413 1.37657 1.46026 2.32213 2.52247 3.05767 3.13552 3.24503 3.55477 3.92080 3.99438 4.13467 4.23190 4.30402 4.34258 4.45448 4.50115 4.60959 4.65614 4.69731 4.80198 4.85190 4.96893 5.09424 5.13437 5.19487 5.26273 5.36298 5.60380 5.70946 5.78623 5.90586 6.07945 6.24555 6.51376 6.82397 6.84608 6.90094 6.95799 7.34479 8.82342 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.006512 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.037148 B = 4298.956127 C = 6050.237985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.046 0.954 9 C 0.270 3.730 10 N -0.621 5.621 11 C 0.133 3.867 12 C -0.150 4.150 13 C 0.116 3.884 14 H 0.087 0.913 15 O -0.567 6.567 16 C 0.049 3.951 17 O -0.588 6.588 18 C 0.210 3.790 19 C -0.220 4.220 20 C -0.082 4.082 21 C -0.197 4.197 22 C -0.073 4.073 23 C -0.216 4.216 24 H 0.267 0.733 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.386 0.614 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.396 0.604 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.148 0.852 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -15.686 -1.011 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.065 0.935 9 C 0.148 3.852 10 N -0.328 5.328 11 C 0.010 3.990 12 C -0.189 4.189 13 C 0.056 3.944 14 H 0.105 0.895 15 O -0.374 6.374 16 C -0.029 4.029 17 O -0.396 6.396 18 C 0.106 3.894 19 C -0.243 4.243 20 C -0.101 4.101 21 C -0.217 4.217 22 C -0.091 4.091 23 C -0.239 4.239 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.910 -14.608 -1.548 15.202 hybrid contribution -0.819 0.742 0.239 1.130 sum 3.092 -13.866 -1.310 14.267 Atomic orbital electron populations 1.70018 1.07284 1.28144 1.51070 1.25730 0.95665 1.02513 0.94540 0.85608 0.78439 0.78812 0.78834 1.19597 1.20279 1.19887 1.21770 0.93102 0.92251 1.51063 0.93541 1.18717 0.87492 0.83336 0.95628 1.46967 1.47739 1.35373 1.02728 1.21211 0.97803 0.95021 0.84980 1.22491 1.00096 0.98983 0.97306 1.21745 0.83304 0.94284 0.95020 0.89532 1.86589 1.30685 1.53777 1.66349 1.22888 0.97388 0.97456 0.85158 1.86493 1.56342 1.63316 1.33452 1.18233 0.92689 0.92349 0.86110 1.20840 1.06603 1.04126 0.92713 1.21076 0.96427 0.95989 0.96616 1.21096 1.01991 0.99673 0.98904 1.21164 0.97872 0.98752 0.91327 1.20849 1.03031 1.00261 0.99772 0.92392 0.97253 0.97111 0.92927 0.90084 0.90160 0.91684 0.76454 0.91261 0.92042 0.75385 0.88779 0.85499 0.84240 0.83440 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 2 C 0.01 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -30.71 9.39 25.60 0.24 -30.47 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.27 14.03 4.91 85.63 0.42 14.45 16 10 N -0.62 -26.60 2.59 -701.65 -1.82 -28.41 16 11 C 0.13 4.72 5.06 86.38 0.44 5.16 16 12 C -0.15 -4.13 5.22 30.59 0.16 -3.97 16 13 C 0.12 2.86 3.25 30.59 0.10 2.96 16 14 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 15 O -0.57 -13.89 12.84 -144.34 -1.85 -15.74 16 16 C 0.05 0.95 6.68 71.98 0.48 1.43 16 17 O -0.59 -12.18 13.62 -144.34 -1.97 -14.14 16 18 C 0.21 8.47 6.55 38.21 0.25 8.72 16 19 C -0.22 -9.19 9.21 22.40 0.21 -8.98 16 20 C -0.08 -2.78 10.04 22.25 0.22 -2.56 16 21 C -0.20 -5.54 10.04 22.29 0.22 -5.32 16 22 C -0.07 -1.99 10.04 22.25 0.22 -1.76 16 23 C -0.22 -6.98 9.21 22.40 0.21 -6.77 16 24 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 25 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 26 H 0.01 0.61 6.20 -2.39 -0.01 0.60 16 27 H 0.05 2.06 8.07 -2.39 -0.02 2.04 16 28 H 0.08 2.67 5.88 -2.39 -0.01 2.65 16 29 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.39 6.34 9.05 -74.06 -0.67 5.67 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.40 4.15 9.12 -74.06 -0.68 3.47 16 35 H 0.09 4.54 6.15 -2.91 -0.02 4.52 16 36 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.13 3.71 6.14 -2.91 -0.02 3.69 16 Total: -1.00 -68.88 327.92 0.02 -68.87 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.29 Total: 22.74 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.63 Total: -25.82 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.53 Total: -82.44 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -3.82 Total: -29.89 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.88 0.02 -68.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310404258.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.549 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds