Wall clock time and date at job start Mon Mar 30 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.46934 * 239.99329 * 3 2 1 5 5 H 1.48500 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47435 * 119.99655 * 3 2 1 7 7 C 1.37871 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99978 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47612 * 179.97438 * 9 7 2 11 11 C 1.47448 * 110.99413 * 49.15566 * 10 9 7 12 12 C 1.54317 * 107.22987 * 123.26316 * 11 10 9 13 13 H 1.09004 * 110.70487 * 263.72145 * 12 11 10 14 14 O 1.42899 * 110.70603 * 140.66253 * 12 11 10 15 15 C 1.55258 * 103.08882 * 22.20111 * 12 11 10 16 16 C 1.47842 * 111.00245 * 169.99955 * 10 9 7 17 17 H 1.08994 * 110.37511 * 332.57819 * 16 10 9 18 18 C 1.50699 * 110.37088 * 94.80770 * 16 10 9 19 19 C 1.38250 * 119.97575 * 38.77294 * 18 16 10 20 20 C 1.38194 * 120.02377 * 180.27953 * 19 18 16 21 21 C 1.38460 * 119.97497 * 359.41202 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00010 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47219 * 59.99881 * 9 7 2 27 27 H 1.09002 * 109.47171 * 299.99793 * 9 7 2 28 28 H 1.09003 * 109.88368 * 242.66612 * 11 10 9 29 29 H 1.08995 * 109.88803 * 3.69036 * 11 10 9 30 30 H 0.96708 * 114.00078 * 61.45312 * 14 12 11 31 31 H 1.09000 * 111.09120 * 206.38785 * 15 12 11 32 32 H 1.09000 * 110.94288 * 82.52748 * 15 12 11 33 33 H 1.07998 * 119.98560 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.01531 * 179.69754 * 20 19 18 35 35 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 36 36 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 3.2332 -3.4323 1.0419 12 6 3.1896 -4.6780 1.9517 13 1 2.5782 -4.4895 2.8342 14 8 4.5095 -5.0746 2.3290 15 6 2.5307 -5.7525 1.0451 16 6 1.5168 -4.9017 0.2402 17 1 0.6086 -4.7431 0.8216 18 6 1.1901 -5.5737 -1.0685 19 6 2.0914 -5.5218 -2.1155 20 6 1.7904 -6.1328 -3.3179 21 6 0.5909 -6.8075 -3.4699 22 9 0.2982 -7.4104 -4.6430 23 6 -0.3084 -6.8641 -2.4185 24 6 -0.0075 -6.2478 -1.2187 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 4.2169 -3.3442 0.5807 29 1 3.0154 -2.5370 1.6241 30 1 4.9919 -4.4057 2.8341 31 1 2.0196 -6.5086 1.6411 32 1 3.2673 -6.2101 0.3848 33 1 3.0290 -4.9995 -1.9952 34 1 2.4925 -6.0880 -4.1374 35 1 -1.2441 -7.3904 -2.5358 36 1 -0.7085 -6.2922 -0.3984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334151861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:28 Heat of formation + Delta-G solvation = -66.244205 kcal Electronic energy + Delta-G solvation = -19934.124494 eV Core-core repulsion = 16718.399424 eV Total energy + Delta-G solvation = -3215.725070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.69491 -39.58568 -37.96461 -35.62964 -33.06305 -31.21067 -30.84800 -30.00926 -26.95500 -26.24578 -23.06685 -22.82792 -21.82774 -20.50913 -19.69445 -17.51580 -17.04908 -16.33456 -16.15320 -15.54441 -15.38848 -15.09060 -14.56446 -14.27370 -13.63010 -13.32135 -13.18807 -13.13488 -12.91332 -12.44534 -12.31755 -12.12555 -11.70568 -11.41430 -11.12159 -11.09093 -10.79459 -10.71632 -10.56634 -10.14128 -9.94605 -9.71109 -9.24267 -8.83692 -8.56159 -8.24192 -7.40696 -6.11738 -4.13911 1.39104 1.51619 3.26852 3.32206 3.34298 3.81260 4.34465 4.40063 4.49133 4.67396 4.94372 5.04000 5.08823 5.18850 5.25570 5.32794 5.44876 5.59595 5.63043 5.76688 5.87816 6.05830 6.15799 6.28323 6.31251 6.37353 6.45894 6.55016 6.61716 6.88254 7.11998 7.17991 7.28109 7.67454 7.81573 7.91792 8.09209 8.39459 8.92935 9.50558 10.99183 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.006120 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.618626 B = 4574.345269 C = 5774.480390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.189 3.811 10 N -0.516 5.516 11 C 0.022 3.978 12 C 0.077 3.923 13 H 0.059 0.941 14 O -0.566 6.566 15 C -0.108 4.108 16 C 0.106 3.894 17 H 0.062 0.938 18 C -0.065 4.065 19 C -0.053 4.053 20 C -0.159 4.159 21 C 0.084 3.916 22 F -0.148 7.148 23 C -0.159 4.159 24 C -0.090 4.090 25 H 0.263 0.737 26 H 0.034 0.966 27 H -0.007 1.007 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.377 0.623 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -12.018 0.577 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.064 3.936 10 N -0.242 5.242 11 C -0.106 4.106 12 C 0.017 3.983 13 H 0.077 0.923 14 O -0.371 6.371 15 C -0.146 4.146 16 C -0.003 4.003 17 H 0.080 0.920 18 C -0.066 4.066 19 C -0.071 4.071 20 C -0.178 4.178 21 C 0.065 3.935 22 F -0.127 7.127 23 C -0.178 4.178 24 C -0.108 4.108 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.010 0.990 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.224 0.776 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.830 -12.443 -0.270 12.763 hybrid contribution -0.084 1.544 0.757 1.722 sum 2.745 -10.899 0.487 11.250 Atomic orbital electron populations 1.69945 1.06081 1.27040 1.50241 1.24980 0.94851 0.99334 0.95183 0.86572 0.79481 0.82769 0.78675 1.20106 1.21280 1.20263 1.21153 0.93395 0.90073 1.51044 0.91823 1.19924 0.90368 0.87028 0.96277 1.63550 1.14399 1.01610 1.44593 1.23457 0.97393 0.96989 0.92788 1.23257 0.83425 0.95267 0.96338 0.92263 1.86449 1.27867 1.45895 1.76848 1.22712 0.97645 0.96760 0.97492 1.21392 0.96502 0.90930 0.91488 0.92012 1.19825 0.93782 0.96893 0.96055 1.20957 1.00213 0.95183 0.90772 1.21160 0.96409 1.00651 0.99570 1.17722 0.95815 0.98012 0.81934 1.91457 1.93703 1.81594 1.45937 1.20979 0.99898 1.03718 0.93155 1.20878 0.96456 0.96714 0.96768 0.92740 0.94828 0.98969 0.91075 0.90486 0.77645 0.90982 0.89893 0.84104 0.85172 0.85275 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.88 7.91 -34.44 -0.27 -14.16 16 8 H 0.06 1.67 6.86 -52.49 -0.36 1.31 16 9 C 0.19 4.71 4.82 -4.97 -0.02 4.68 16 10 N -0.52 -10.38 4.21 -226.18 -0.95 -11.34 16 11 C 0.02 0.40 5.55 -2.83 -0.02 0.39 16 12 C 0.08 1.17 4.32 -24.84 -0.11 1.06 16 13 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 14 O -0.57 -7.92 13.39 -35.23 -0.47 -8.39 16 15 C -0.11 -1.60 6.21 -24.53 -0.15 -1.75 16 16 C 0.11 1.79 2.62 -67.34 -0.18 1.61 16 17 H 0.06 1.07 7.50 -51.93 -0.39 0.68 16 18 C -0.06 -1.04 5.03 -104.62 -0.53 -1.56 16 19 C -0.05 -0.84 9.22 -39.59 -0.37 -1.20 16 20 C -0.16 -2.33 10.03 -39.52 -0.40 -2.73 16 21 C 0.08 1.24 7.30 -39.42 -0.29 0.95 16 22 F -0.15 -2.18 17.27 2.25 0.04 -2.14 16 23 C -0.16 -2.18 10.03 -39.51 -0.40 -2.58 16 24 C -0.09 -1.28 9.68 -39.59 -0.38 -1.67 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 27 H -0.01 -0.20 7.82 -51.93 -0.41 -0.60 16 28 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 29 H 0.08 1.54 6.48 -51.93 -0.34 1.21 16 30 H 0.38 3.75 9.11 45.56 0.42 4.17 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 33 H 0.14 2.28 7.71 -52.49 -0.40 1.87 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.13 1.57 8.05 -52.49 -0.42 1.15 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -29.76 305.59 -8.25 -38.01 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.98 Total: 3.89 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.20 Total: -15.44 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.22 Total: -36.52 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.47 Total: -8.39 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.76 -8.25 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334151861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.239 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds