Wall clock time and date at job start Mon Mar 30 2020 05:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.46934 * 239.99329 * 3 2 1 5 5 H 1.48500 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47435 * 119.99655 * 3 2 1 7 7 C 1.37871 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99978 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47612 * 179.97438 * 9 7 2 11 11 C 1.47448 * 110.99413 * 49.15566 * 10 9 7 12 12 C 1.54317 * 107.22987 * 123.26316 * 11 10 9 13 13 H 1.09004 * 110.70487 * 263.72145 * 12 11 10 14 14 O 1.42899 * 110.70603 * 140.66253 * 12 11 10 15 15 C 1.55258 * 103.08882 * 22.20111 * 12 11 10 16 16 C 1.47842 * 111.00245 * 169.99955 * 10 9 7 17 17 H 1.08994 * 110.37511 * 332.57819 * 16 10 9 18 18 C 1.50699 * 110.37088 * 94.80770 * 16 10 9 19 19 C 1.38250 * 119.97575 * 38.77294 * 18 16 10 20 20 C 1.38194 * 120.02377 * 180.27953 * 19 18 16 21 21 C 1.38460 * 119.97497 * 359.41202 * 20 19 18 22 22 F 1.35105 * 120.02800 * 180.30394 * 21 20 19 23 23 C 1.38467 * 119.94896 * 0.28520 * 21 20 19 24 24 C 1.38197 * 119.97188 * 359.97438 * 23 21 20 25 25 H 0.97000 * 120.00010 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47219 * 59.99881 * 9 7 2 27 27 H 1.09002 * 109.47171 * 299.99793 * 9 7 2 28 28 H 1.09003 * 109.88368 * 242.66612 * 11 10 9 29 29 H 1.08995 * 109.88803 * 3.69036 * 11 10 9 30 30 H 0.96708 * 114.00078 * 61.45312 * 14 12 11 31 31 H 1.09000 * 111.09120 * 206.38785 * 15 12 11 32 32 H 1.09000 * 110.94288 * 82.52748 * 15 12 11 33 33 H 1.07998 * 119.98560 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.01531 * 179.69754 * 20 19 18 35 35 H 1.07998 * 120.01314 * 180.02562 * 23 21 20 36 36 H 1.07994 * 119.98607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 3.2332 -3.4323 1.0419 12 6 3.1896 -4.6780 1.9517 13 1 2.5782 -4.4895 2.8342 14 8 4.5095 -5.0746 2.3290 15 6 2.5307 -5.7525 1.0451 16 6 1.5168 -4.9017 0.2402 17 1 0.6086 -4.7431 0.8216 18 6 1.1901 -5.5737 -1.0685 19 6 2.0914 -5.5218 -2.1155 20 6 1.7904 -6.1328 -3.3179 21 6 0.5909 -6.8075 -3.4699 22 9 0.2982 -7.4104 -4.6430 23 6 -0.3084 -6.8641 -2.4185 24 6 -0.0075 -6.2478 -1.2187 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 4.2169 -3.3442 0.5807 29 1 3.0154 -2.5370 1.6241 30 1 4.9919 -4.4057 2.8341 31 1 2.0196 -6.5086 1.6411 32 1 3.2673 -6.2101 0.3848 33 1 3.0290 -4.9995 -1.9952 34 1 2.4925 -6.0880 -4.1374 35 1 -1.2441 -7.3904 -2.5358 36 1 -0.7085 -6.2922 -0.3984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334151861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:28 Heat of formation + Delta-G solvation = -86.008037 kcal Electronic energy + Delta-G solvation = -19934.981518 eV Core-core repulsion = 16718.399424 eV Total energy + Delta-G solvation = -3216.582095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.84852 -40.89935 -39.20393 -36.94044 -34.99361 -32.71341 -32.00678 -31.39792 -28.30474 -28.11870 -24.70206 -24.03183 -23.20540 -21.90104 -21.08993 -18.69326 -18.34793 -18.16350 -17.50901 -16.97735 -16.54372 -16.46830 -16.24238 -15.58791 -15.03114 -14.58018 -14.50486 -14.40968 -14.28250 -14.00075 -13.90852 -13.64374 -13.11788 -12.93032 -12.69416 -12.57044 -12.38207 -12.27933 -11.85720 -11.79500 -11.46240 -11.26053 -10.99075 -10.64951 -9.97715 -9.44473 -9.05580 -8.22742 -6.32103 0.20860 0.37167 1.40384 1.43035 1.50697 2.38478 2.63068 3.10567 3.23738 3.27282 3.35117 3.68270 3.87290 3.89356 4.02109 4.06940 4.20301 4.31944 4.46353 4.58330 4.63728 4.81906 4.91528 5.00397 5.09688 5.10914 5.17285 5.20371 5.21972 5.32230 5.38706 5.60268 5.72081 5.96189 6.01992 6.27178 6.55050 6.84392 6.86112 7.37479 8.88671 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.006120 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.618626 B = 4574.345269 C = 5774.480390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.523 5.523 11 C 0.023 3.977 12 C 0.090 3.910 13 H 0.069 0.931 14 O -0.569 6.569 15 C -0.099 4.099 16 C 0.105 3.895 17 H 0.055 0.945 18 C -0.082 4.082 19 C -0.067 4.067 20 C -0.161 4.161 21 C 0.075 3.925 22 F -0.148 7.148 23 C -0.153 4.153 24 C -0.092 4.092 25 H 0.264 0.736 26 H -0.001 1.001 27 H -0.032 1.032 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.395 0.605 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -12.774 0.953 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.248 5.248 11 C -0.105 4.105 12 C 0.030 3.970 13 H 0.086 0.914 14 O -0.376 6.376 15 C -0.137 4.137 16 C -0.003 4.003 17 H 0.073 0.927 18 C -0.082 4.082 19 C -0.085 4.085 20 C -0.179 4.179 21 C 0.056 3.944 22 F -0.127 7.127 23 C -0.172 4.172 24 C -0.110 4.110 25 H 0.073 0.927 26 H 0.017 0.983 27 H -0.014 1.014 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.579 -13.213 0.119 13.690 hybrid contribution -0.300 1.722 0.621 1.855 sum 3.279 -11.491 0.740 11.973 Atomic orbital electron populations 1.70076 1.07727 1.27953 1.51407 1.25873 0.95663 1.03091 0.94749 0.85496 0.78209 0.78164 0.79135 1.19622 1.21059 1.18893 1.21491 0.93683 0.91093 1.50446 0.91535 1.19488 0.90350 0.88523 0.93357 1.63411 1.13867 1.01542 1.45942 1.23422 0.96542 0.97891 0.92689 1.23049 0.84360 0.93631 0.96006 0.91352 1.86419 1.27307 1.46701 1.77174 1.22681 0.97057 0.96689 0.97256 1.21441 0.96631 0.89708 0.92535 0.92656 1.19889 0.94829 0.97757 0.95763 1.20923 1.00128 0.95978 0.91464 1.21313 0.96900 1.00156 0.99571 1.17886 0.96103 0.98184 0.82248 1.91457 1.93690 1.81578 1.45961 1.21268 1.00565 1.02982 0.92389 1.21108 0.96047 0.96167 0.97713 0.92699 0.98339 1.01435 0.91013 0.92712 0.75531 0.88447 0.90016 0.85050 0.83578 0.82680 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.53 -28.88 7.91 25.60 0.20 -28.68 16 8 H 0.07 3.51 6.86 -2.91 -0.02 3.49 16 9 C 0.21 10.79 4.82 85.56 0.41 11.20 16 10 N -0.52 -21.37 4.21 -869.50 -3.66 -25.03 16 11 C 0.02 0.83 5.55 86.65 0.48 1.31 16 12 C 0.09 2.58 4.32 31.82 0.14 2.71 16 13 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 14 O -0.57 -14.58 13.39 -148.98 -2.00 -16.58 16 15 C -0.10 -2.76 6.21 32.02 0.20 -2.56 16 16 C 0.11 3.53 2.62 44.64 0.12 3.65 16 17 H 0.06 1.93 7.50 -2.39 -0.02 1.91 16 18 C -0.08 -2.58 5.03 -19.86 -0.10 -2.68 16 19 C -0.07 -2.10 9.22 22.26 0.21 -1.89 16 20 C -0.16 -4.58 10.03 22.31 0.22 -4.36 16 21 C 0.07 2.10 7.30 22.38 0.16 2.27 16 22 F -0.15 -4.13 17.27 44.97 0.78 -3.35 16 23 C -0.15 -3.94 10.03 22.31 0.22 -3.71 16 24 C -0.09 -2.51 9.68 22.26 0.22 -2.29 16 25 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 26 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 27 H -0.03 -1.77 7.82 -2.39 -0.02 -1.79 16 28 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 29 H 0.05 2.22 6.48 -2.39 -0.02 2.20 16 30 H 0.39 6.93 9.11 -74.05 -0.67 6.26 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.32 7.95 -2.39 -0.02 2.30 16 33 H 0.13 4.31 7.71 -2.91 -0.02 4.29 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.15 3.36 8.05 -2.91 -0.02 3.33 16 Total: -1.00 -64.05 305.59 0.79 -63.26 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.41 Total: 15.64 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 2.94 Total: -24.31 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -3.38 Total: -79.88 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -2.00 Total: -16.58 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.05 0.79 -63.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334151861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.750 kcal (2) G-P(sol) polarization free energy of solvation -64.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds