Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46728 * 65.00652 * 12 11 10 14 14 C 1.35896 * 117.00039 * 179.97438 * 13 12 11 15 15 C 1.38738 * 120.05353 * 359.72616 * 14 13 12 16 16 C 1.38149 * 119.94056 * 179.70430 * 15 14 13 17 17 C 1.38261 * 120.05702 * 0.59118 * 16 15 14 18 18 C 1.50703 * 119.94552 * 179.70844 * 17 16 15 19 19 C 1.53002 * 109.46527 * 269.97627 * 18 17 16 20 20 N 1.46905 * 109.46803 * 180.02562 * 19 18 17 21 21 C 1.38262 * 120.11084 * 359.67801 * 17 16 15 22 22 C 1.38145 * 120.05942 * 0.02720 * 21 17 16 23 23 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 26 26 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 27 27 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 28 28 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 29 29 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 30 30 H 1.07995 * 120.02746 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96832 * 180.27565 * 16 15 14 32 32 H 1.08992 * 109.47037 * 29.97091 * 18 17 16 33 33 H 1.08998 * 109.46989 * 149.98043 * 18 17 16 34 34 H 1.09004 * 109.47165 * 299.99904 * 19 18 17 35 35 H 1.08993 * 109.47678 * 59.99781 * 19 18 17 36 36 H 1.00902 * 110.99960 * 56.04950 * 20 19 18 37 37 H 1.00903 * 110.99740 * 179.97438 * 20 19 18 38 38 H 1.08009 * 119.97583 * 179.97438 * 21 17 16 39 39 H 1.08000 * 120.03441 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.3881 -5.8896 1.2210 14 6 4.3946 -6.7884 1.3821 15 6 4.6607 -7.7191 0.3882 16 6 5.6884 -8.6277 0.5517 17 6 6.4435 -8.6180 1.7098 18 6 7.5598 -9.6147 1.8883 19 6 7.0140 -10.8768 2.5592 20 7 8.1022 -11.8481 2.7338 21 6 6.1767 -7.6952 2.7042 22 6 5.1541 -6.7805 2.5430 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.9446 -4.9827 -0.8887 27 1 0.9451 -4.9822 0.8913 28 1 3.3209 -5.7958 -0.8418 29 1 2.1818 -6.9376 -0.0887 30 1 4.0677 -7.7304 -0.5144 31 1 5.8988 -9.3495 -0.2236 32 1 7.9763 -9.8720 0.9145 33 1 8.3393 -9.1790 2.5134 34 1 6.5974 -10.6194 3.5331 35 1 6.2345 -11.3124 1.9343 36 1 8.8659 -11.4455 3.2562 37 1 7.7670 -12.6910 3.1757 38 1 6.7678 -7.6898 3.6082 39 1 4.9458 -6.0600 3.3201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385190330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -74.630920 kcal Electronic energy + Delta-G solvation = -18825.141568 eV Core-core repulsion = 15732.513127 eV Total energy + Delta-G solvation = -3092.628441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.12245 -38.05690 -36.55804 -35.40459 -32.78281 -31.66975 -31.06035 -29.83656 -27.16670 -26.73017 -23.55825 -22.93456 -22.33467 -21.67428 -20.76263 -18.21040 -16.60631 -16.38292 -16.18312 -15.97561 -15.56767 -14.99252 -14.79471 -14.59896 -14.22236 -14.18066 -13.89382 -13.62032 -13.34812 -12.79649 -12.67198 -12.03437 -11.86180 -11.66820 -11.42158 -11.35262 -10.94912 -10.89369 -10.81324 -10.67267 -10.46897 -10.03951 -9.12872 -9.12110 -9.02416 -8.86955 -8.20682 -8.02266 -6.11473 -4.12982 1.31203 1.40015 3.30688 3.35510 3.36884 3.41597 3.69808 4.17377 4.32994 4.63773 4.72210 4.80648 4.88922 4.95925 4.98848 5.16603 5.25044 5.29848 5.32020 5.39781 5.40968 5.57813 5.74237 5.80974 5.84648 5.90820 6.01625 6.10571 6.27102 6.38323 6.55085 6.70264 6.78065 7.00706 7.05653 7.40152 7.57566 7.78966 8.13175 8.53451 8.99784 9.51694 11.00096 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040372 B = 0.002778 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.379589 B =10075.508196 C =10493.687156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.065 3.935 13 O -0.299 6.299 14 C 0.139 3.861 15 C -0.211 4.211 16 C -0.074 4.074 17 C -0.134 4.134 18 C -0.070 4.070 19 C 0.065 3.935 20 N -0.854 5.854 21 C -0.077 4.077 22 C -0.153 4.153 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.340 0.660 37 H 0.341 0.659 38 H 0.124 0.876 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.377 -21.597 4.223 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.015 4.015 12 C -0.010 4.010 13 O -0.212 6.212 14 C 0.092 3.908 15 C -0.230 4.230 16 C -0.092 4.092 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.066 4.066 20 N -0.384 5.384 21 C -0.095 4.095 22 C -0.171 4.171 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.378 -21.269 3.551 24.381 hybrid contribution -0.292 0.891 0.764 1.210 sum 11.086 -20.377 4.315 23.596 Atomic orbital electron populations 1.69961 1.06095 1.27181 1.50590 1.24957 0.95007 0.99472 0.95136 0.86318 0.79692 0.82158 0.78230 1.20453 1.21055 1.19592 1.21052 0.94109 0.89294 1.50772 0.91512 1.20237 0.88758 0.83548 0.95463 1.87927 1.35245 1.12576 1.95202 1.22281 0.93277 0.85542 1.00426 1.22962 0.93924 0.98417 0.85686 1.86241 1.43083 1.52180 1.39668 1.19165 0.88678 0.88769 0.94152 1.21285 1.02330 0.99137 1.00243 1.20783 0.94137 0.97515 0.96785 1.19609 0.99464 0.99003 0.95383 1.20439 0.95461 0.92936 1.01988 1.21813 0.93551 0.92233 0.98988 1.58742 1.11660 1.08733 1.59226 1.20790 0.96355 0.94061 0.98293 1.20479 0.97326 1.01998 0.97323 0.92645 0.97644 0.97517 0.92160 0.93279 0.91289 0.91367 0.85433 0.86023 0.90458 0.91450 0.95362 0.90907 0.84834 0.84635 0.85819 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.40 5.69 36.01 0.20 5.61 16 10 O -0.39 -9.66 10.29 -40.08 -0.41 -10.07 16 11 C 0.06 1.16 6.32 37.16 0.23 1.39 16 12 C 0.07 1.00 5.12 37.16 0.19 1.19 16 13 O -0.30 -5.23 10.10 -24.26 -0.25 -5.47 16 14 C 0.14 2.07 6.69 -39.21 -0.26 1.81 16 15 C -0.21 -2.66 9.04 -39.43 -0.36 -3.02 16 16 C -0.07 -0.81 9.69 -39.61 -0.38 -1.19 16 17 C -0.13 -1.40 5.13 -104.60 -0.54 -1.93 16 18 C -0.07 -0.58 5.60 -27.88 -0.16 -0.73 16 19 C 0.06 0.49 6.77 -3.82 -0.03 0.46 16 20 N -0.85 -5.54 9.62 -10.37 -0.10 -5.64 16 21 C -0.08 -0.85 9.69 -39.61 -0.38 -1.24 16 22 C -0.15 -2.06 9.99 -39.43 -0.39 -2.45 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.02 7.68 -51.93 -0.40 0.63 16 29 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 30 H 0.13 1.42 6.30 -52.49 -0.33 1.08 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.34 1.78 8.99 -39.29 -0.35 1.42 16 37 H 0.34 1.71 9.08 -39.29 -0.36 1.35 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -33.11 333.80 -8.33 -41.44 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.03 Total: -1.70 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.29 Total: -14.33 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.64 Total: -31.99 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.66 Total: -15.54 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.11 -8.33 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.190 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds