Wall clock time and date at job start Mon Mar 30 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46728 * 65.00652 * 12 11 10 14 14 C 1.35896 * 117.00039 * 179.97438 * 13 12 11 15 15 C 1.38738 * 120.05353 * 359.72616 * 14 13 12 16 16 C 1.38149 * 119.94056 * 179.70430 * 15 14 13 17 17 C 1.38261 * 120.05702 * 0.59118 * 16 15 14 18 18 C 1.50703 * 119.94552 * 179.70844 * 17 16 15 19 19 C 1.53002 * 109.46527 * 269.97627 * 18 17 16 20 20 N 1.46905 * 109.46803 * 180.02562 * 19 18 17 21 21 C 1.38262 * 120.11084 * 359.67801 * 17 16 15 22 22 C 1.38145 * 120.05942 * 0.02720 * 21 17 16 23 23 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 26 26 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 27 27 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 28 28 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 29 29 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 30 30 H 1.07995 * 120.02746 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.96832 * 180.27565 * 16 15 14 32 32 H 1.08992 * 109.47037 * 29.97091 * 18 17 16 33 33 H 1.08998 * 109.46989 * 149.98043 * 18 17 16 34 34 H 1.09004 * 109.47165 * 299.99904 * 19 18 17 35 35 H 1.08993 * 109.47678 * 59.99781 * 19 18 17 36 36 H 1.00902 * 110.99960 * 56.04950 * 20 19 18 37 37 H 1.00903 * 110.99740 * 179.97438 * 20 19 18 38 38 H 1.08009 * 119.97583 * 179.97438 * 21 17 16 39 39 H 1.08000 * 120.03441 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.3881 -5.8896 1.2210 14 6 4.3946 -6.7884 1.3821 15 6 4.6607 -7.7191 0.3882 16 6 5.6884 -8.6277 0.5517 17 6 6.4435 -8.6180 1.7098 18 6 7.5598 -9.6147 1.8883 19 6 7.0140 -10.8768 2.5592 20 7 8.1022 -11.8481 2.7338 21 6 6.1767 -7.6952 2.7042 22 6 5.1541 -6.7805 2.5430 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.9446 -4.9827 -0.8887 27 1 0.9451 -4.9822 0.8913 28 1 3.3209 -5.7958 -0.8418 29 1 2.1818 -6.9376 -0.0887 30 1 4.0677 -7.7304 -0.5144 31 1 5.8988 -9.3495 -0.2236 32 1 7.9763 -9.8720 0.9145 33 1 8.3393 -9.1790 2.5134 34 1 6.5974 -10.6194 3.5331 35 1 6.2345 -11.3124 1.9343 36 1 8.8659 -11.4455 3.2562 37 1 7.7670 -12.6910 3.1757 38 1 6.7678 -7.6898 3.6082 39 1 4.9458 -6.0600 3.3201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385190330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:09 Heat of formation + Delta-G solvation = -97.420709 kcal Electronic energy + Delta-G solvation = -18826.129807 eV Core-core repulsion = 15732.513127 eV Total energy + Delta-G solvation = -3093.616680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15275 -39.19849 -38.25310 -36.10214 -34.97298 -32.62339 -31.95605 -31.21740 -29.06151 -27.73978 -24.84753 -24.39712 -23.69223 -22.76211 -21.65737 -19.29601 -18.69616 -17.76181 -17.27859 -16.90133 -16.74475 -16.44055 -16.16658 -15.92693 -15.56427 -15.25323 -14.86782 -14.74626 -14.34283 -14.12686 -13.76616 -13.57435 -13.26339 -13.03594 -12.74528 -12.67479 -12.46419 -12.25007 -12.15326 -11.96135 -11.73898 -11.60278 -11.31229 -10.91993 -10.29889 -9.95614 -9.61167 -9.01459 -8.34980 -6.47443 0.39321 0.45052 1.38117 1.41193 1.53399 2.25283 2.32661 2.77648 2.98521 3.07372 3.60873 3.80429 3.94683 4.00156 4.10529 4.17882 4.26017 4.35075 4.37663 4.44205 4.45850 4.53093 4.63618 4.68799 4.82190 4.83777 4.98718 5.13196 5.13945 5.20884 5.35991 5.42652 5.51359 5.69197 5.88274 5.92285 6.23300 6.45457 6.52360 6.61104 6.77091 7.24154 8.77261 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040372 B = 0.002778 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.379589 B =10075.508196 C =10493.687156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.051 3.949 12 C 0.071 3.929 13 O -0.335 6.335 14 C 0.105 3.895 15 C -0.214 4.214 16 C -0.077 4.077 17 C -0.127 4.127 18 C -0.065 4.065 19 C 0.069 3.931 20 N -0.860 5.860 21 C -0.076 4.076 22 C -0.172 4.172 23 H 0.272 0.728 24 H -0.006 1.006 25 H -0.014 1.014 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.347 0.653 37 H 0.350 0.650 38 H 0.148 0.852 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.965 -22.523 3.996 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.026 4.026 12 C -0.004 4.004 13 O -0.249 6.249 14 C 0.060 3.940 15 C -0.233 4.233 16 C -0.094 4.094 17 C -0.128 4.128 18 C -0.103 4.103 19 C -0.062 4.062 20 N -0.391 5.391 21 C -0.094 4.094 22 C -0.191 4.191 23 H 0.081 0.919 24 H 0.012 0.988 25 H 0.004 0.996 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.970 -22.233 3.326 25.953 hybrid contribution -0.757 1.024 0.863 1.539 sum 12.213 -21.208 4.190 24.829 Atomic orbital electron populations 1.70058 1.07659 1.28738 1.50302 1.25974 0.96045 1.03396 0.93838 0.85170 0.78268 0.76931 0.78962 1.19023 1.19683 1.19172 1.21374 0.94001 0.90983 1.52527 0.92362 1.19867 0.88581 0.84505 0.93766 1.87872 1.35527 1.14305 1.95291 1.22675 0.94958 0.83587 1.01399 1.22963 0.93255 0.98757 0.85378 1.86165 1.44393 1.53836 1.40499 1.19453 0.89149 0.89738 0.95649 1.21476 1.02934 0.98777 1.00086 1.21119 0.93385 0.97358 0.97587 1.19932 0.99412 0.98677 0.94748 1.20432 0.94773 0.92631 1.02476 1.21710 0.93679 0.92048 0.98769 1.58718 1.11628 1.08941 1.59776 1.21061 0.95630 0.93296 0.99408 1.20661 0.98365 1.02905 0.97172 0.91932 0.98848 0.99629 0.89967 0.93439 0.91000 0.87401 0.84147 0.83615 0.90253 0.90357 0.95371 0.91477 0.83974 0.83680 0.83470 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.98 45.24 29.54 68.60 2.03 47.26 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -33.88 9.43 25.60 0.24 -33.64 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 12.00 5.69 71.24 0.41 12.41 16 10 O -0.41 -20.98 10.29 -144.35 -1.49 -22.47 16 11 C 0.05 1.90 6.32 71.98 0.45 2.35 16 12 C 0.07 2.15 5.12 71.98 0.37 2.52 16 13 O -0.33 -11.98 10.10 -87.75 -0.89 -12.87 16 14 C 0.11 3.16 6.69 22.51 0.15 3.31 16 15 C -0.21 -5.16 9.04 22.37 0.20 -4.95 16 16 C -0.08 -1.52 9.69 22.25 0.22 -1.30 16 17 C -0.13 -2.39 5.13 -19.85 -0.10 -2.49 16 18 C -0.07 -0.90 5.60 29.85 0.17 -0.73 16 19 C 0.07 0.87 6.77 86.30 0.58 1.45 16 20 N -0.86 -9.12 9.62 -186.71 -1.80 -10.92 16 21 C -0.08 -1.59 9.69 22.25 0.22 -1.37 16 22 C -0.17 -4.70 9.99 22.37 0.22 -4.48 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 29 H 0.11 2.37 7.65 -2.39 -0.02 2.35 16 30 H 0.14 2.88 6.30 -2.91 -0.02 2.86 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 34 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.35 2.79 8.99 -89.69 -0.81 1.98 16 37 H 0.35 2.76 9.08 -89.69 -0.81 1.94 16 38 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -72.30 333.80 1.16 -71.14 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -0.57 Total: 10.08 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.59 Total: -26.10 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.51 Total: -67.05 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -2.37 Total: -35.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.30 1.16 -71.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385190330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.279 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds