Wall clock time and date at job start Mon Mar 30 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00370 * 2 1 4 4 H 1.48499 * 109.47080 * 270.00306 * 3 2 1 5 5 H 1.48500 * 109.46869 * 30.00346 * 3 2 1 6 6 H 1.48495 * 109.46979 * 150.00099 * 3 2 1 7 7 C 1.37886 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99725 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.46542 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99961 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47162 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47439 * 64.99678 * 12 11 10 14 14 C 1.46897 * 111.00179 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47298 * 180.02562 * 14 13 12 16 16 C 1.38264 * 119.99747 * 270.02274 * 15 14 13 17 17 C 1.38205 * 119.99484 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.00498 * 359.81306 * 17 16 15 19 19 C 1.38217 * 119.99351 * 0.42077 * 18 17 16 20 20 C 1.50699 * 119.99610 * 179.81235 * 19 18 17 21 21 O 1.42903 * 109.47152 * 269.72650 * 20 19 18 22 22 C 1.38205 * 119.99984 * 90.00256 * 15 14 13 23 23 H 0.97006 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47580 * 59.99809 * 9 7 2 25 25 H 1.09003 * 109.47216 * 299.99237 * 9 7 2 26 26 H 1.09000 * 109.47339 * 59.99432 * 11 10 9 27 27 H 1.09001 * 109.46812 * 300.00096 * 11 10 9 28 28 H 1.09003 * 109.46880 * 304.99529 * 12 11 10 29 29 H 1.09000 * 109.46880 * 184.99831 * 12 11 10 30 30 H 1.00895 * 110.99815 * 303.95246 * 13 12 11 31 31 H 1.09003 * 109.46778 * 59.99869 * 14 13 12 32 32 H 1.09004 * 109.47334 * 300.00411 * 14 13 12 33 33 H 1.07992 * 119.99832 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.99707 * 180.02562 * 17 16 15 35 35 H 1.07994 * 120.00185 * 180.22639 * 18 17 16 36 36 H 1.08997 * 109.47198 * 149.72328 * 20 19 18 37 37 H 1.09008 * 109.47393 * 29.72044 * 20 19 18 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.08005 * 120.00366 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9877 -2.5414 -0.0010 11 6 5.4123 -2.6544 -0.0021 12 6 5.8067 -4.1326 -0.0025 13 7 5.3664 -4.7566 -1.2574 14 6 5.7295 -6.1796 -1.2935 15 6 5.2632 -6.7842 -2.5928 16 6 4.0010 -7.3414 -2.6823 17 6 3.5733 -7.8954 -3.8740 18 6 4.4060 -7.8889 -4.9777 19 6 5.6695 -7.3362 -4.8867 20 6 6.5788 -7.3330 -6.0885 21 8 7.3671 -8.5249 -6.0927 22 6 6.0971 -6.7813 -3.6949 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 5.8158 -2.1704 0.8873 27 1 5.8143 -2.1711 -0.8926 28 1 5.3315 -4.6356 0.8397 29 1 6.8896 -4.2197 0.0862 30 1 4.3745 -4.6326 -1.3942 31 1 5.2541 -6.6970 -0.4602 32 1 6.8119 -6.2805 -1.2139 33 1 3.3495 -7.3437 -1.8210 34 1 2.5872 -8.3303 -3.9441 35 1 4.0703 -8.3186 -5.9099 36 1 7.2348 -6.4636 -6.0455 37 1 5.9791 -7.2909 -6.9978 38 1 7.9774 -8.5903 -6.8399 39 1 7.0828 -6.3453 -3.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385235124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:53 Heat of formation + Delta-G solvation = -76.611366 kcal Electronic energy + Delta-G solvation = -18983.256272 eV Core-core repulsion = 15890.541952 eV Total energy + Delta-G solvation = -3092.714319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.64693 -37.44522 -36.88160 -35.45980 -32.72055 -31.98784 -31.44266 -28.97813 -27.34756 -26.13398 -24.68291 -22.11968 -21.91070 -21.45078 -20.53055 -17.70835 -16.91148 -16.68297 -16.19060 -15.68492 -15.51699 -15.33662 -14.72414 -14.49762 -14.09783 -13.98545 -13.74276 -13.44977 -12.83748 -12.71778 -12.40906 -12.27960 -12.06041 -11.93691 -11.52993 -11.14212 -11.00281 -10.91760 -10.72241 -10.51141 -10.33558 -9.87044 -9.19534 -8.89994 -8.88013 -8.80587 -8.47741 -8.24750 -6.12367 -4.11383 1.21195 1.35226 3.24877 3.31626 3.33201 3.55594 4.20165 4.35148 4.48108 4.64751 4.68830 4.78094 4.90048 5.04697 5.07264 5.15530 5.19338 5.28119 5.39960 5.46107 5.57134 5.60187 5.66156 5.91022 5.95573 6.01002 6.05920 6.19930 6.40418 6.46900 6.57882 6.61112 6.92266 6.99830 7.13902 7.31207 7.56631 7.61065 8.00332 8.65459 8.98231 9.46997 11.00659 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.003285 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.700171 B = 8522.841177 C = 8824.625497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.058 3.942 12 C 0.065 3.935 13 N -0.683 5.683 14 C 0.097 3.903 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.102 4.102 19 C -0.100 4.100 20 C 0.118 3.882 21 O -0.569 6.569 22 C -0.077 4.077 23 H 0.266 0.734 24 H 0.002 0.998 25 H -0.001 1.001 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.358 0.642 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.378 0.622 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.745 -15.098 -9.367 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.064 4.064 13 N -0.317 5.317 14 C -0.032 4.032 15 C -0.081 4.081 16 C -0.122 4.122 17 C -0.140 4.140 18 C -0.120 4.120 19 C -0.100 4.100 20 C 0.041 3.959 21 O -0.375 6.375 22 C -0.096 4.096 23 H 0.076 0.924 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.178 0.822 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.665 -15.023 -9.147 22.900 hybrid contribution 0.135 1.003 0.089 1.016 sum 14.800 -14.020 -9.058 22.308 Atomic orbital electron populations 1.69876 1.06071 1.27097 1.50360 1.24772 0.94811 0.98793 0.94620 0.86837 0.80319 0.83709 0.78804 1.19889 1.20806 1.19112 1.20890 0.88301 0.95276 1.51236 0.90042 1.20575 0.96076 0.79412 0.94345 1.87845 1.17685 1.29753 1.95090 1.22381 0.84868 0.95158 0.99614 1.21954 0.99599 0.94207 0.90624 1.60532 1.24005 1.11775 1.35340 1.20871 1.00631 0.88680 0.92997 1.19783 0.94361 0.98371 0.95633 1.21165 0.95439 0.97459 0.98150 1.21104 0.99748 1.00238 0.92948 1.21001 0.93666 0.98654 0.98679 1.19555 0.94755 1.00735 0.94947 1.20980 0.92281 0.87290 0.95363 1.86572 1.56874 1.41999 1.52011 1.20868 0.99446 0.97770 0.91499 0.92364 0.98039 0.98289 0.93923 0.93392 0.94512 0.90498 0.82202 0.94366 0.90496 0.85905 0.85840 0.86250 0.92645 0.92806 0.77500 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -15.50 9.99 -34.44 -0.34 -15.84 16 8 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.17 4.38 4.76 36.00 0.17 4.55 16 10 O -0.38 -8.87 9.85 -35.23 -0.35 -9.22 16 11 C 0.06 1.02 6.28 37.16 0.23 1.25 16 12 C 0.07 0.95 6.11 -3.83 -0.02 0.92 16 13 N -0.68 -10.14 6.49 -115.06 -0.75 -10.89 16 14 C 0.10 1.20 5.81 -4.98 -0.03 1.17 16 15 C -0.08 -1.03 5.39 -104.63 -0.56 -1.59 16 16 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 17 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 18 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 19 C -0.10 -1.16 5.51 -104.62 -0.58 -1.74 16 20 C 0.12 1.06 7.17 36.01 0.26 1.32 16 21 O -0.57 -5.22 13.64 -35.23 -0.48 -5.70 16 22 C -0.08 -0.95 9.36 -39.59 -0.37 -1.32 16 23 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 25 H 0.00 -0.01 7.57 -51.93 -0.39 -0.41 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.36 6.06 8.28 -39.29 -0.33 5.73 16 31 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.05 0.40 8.08 -51.92 -0.42 -0.02 16 38 H 0.38 1.53 9.12 45.56 0.42 1.94 16 39 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -33.74 333.13 -8.29 -42.03 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.33 Total: 3.12 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -2.51 Total: -14.25 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.03 Total: -37.85 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.83 Total: -14.92 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.74 -8.29 -42.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385235124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.584 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds