Wall clock time and date at job start Mon Mar 30 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00370 * 2 1 4 4 H 1.48499 * 109.47080 * 270.00306 * 3 2 1 5 5 H 1.48500 * 109.46869 * 30.00346 * 3 2 1 6 6 H 1.48495 * 109.46979 * 150.00099 * 3 2 1 7 7 C 1.37886 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99725 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.46542 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99961 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47162 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47439 * 64.99678 * 12 11 10 14 14 C 1.46897 * 111.00179 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47298 * 180.02562 * 14 13 12 16 16 C 1.38264 * 119.99747 * 270.02274 * 15 14 13 17 17 C 1.38205 * 119.99484 * 179.97438 * 16 15 14 18 18 C 1.38262 * 120.00498 * 359.81306 * 17 16 15 19 19 C 1.38217 * 119.99351 * 0.42077 * 18 17 16 20 20 C 1.50699 * 119.99610 * 179.81235 * 19 18 17 21 21 O 1.42903 * 109.47152 * 269.72650 * 20 19 18 22 22 C 1.38205 * 119.99984 * 90.00256 * 15 14 13 23 23 H 0.97006 * 119.99609 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47580 * 59.99809 * 9 7 2 25 25 H 1.09003 * 109.47216 * 299.99237 * 9 7 2 26 26 H 1.09000 * 109.47339 * 59.99432 * 11 10 9 27 27 H 1.09001 * 109.46812 * 300.00096 * 11 10 9 28 28 H 1.09003 * 109.46880 * 304.99529 * 12 11 10 29 29 H 1.09000 * 109.46880 * 184.99831 * 12 11 10 30 30 H 1.00895 * 110.99815 * 303.95246 * 13 12 11 31 31 H 1.09003 * 109.46778 * 59.99869 * 14 13 12 32 32 H 1.09004 * 109.47334 * 300.00411 * 14 13 12 33 33 H 1.07992 * 119.99832 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.99707 * 180.02562 * 17 16 15 35 35 H 1.07994 * 120.00185 * 180.22639 * 18 17 16 36 36 H 1.08997 * 109.47198 * 149.72328 * 20 19 18 37 37 H 1.09008 * 109.47393 * 29.72044 * 20 19 18 38 38 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 39 39 H 1.08005 * 120.00366 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9877 -2.5414 -0.0010 11 6 5.4123 -2.6544 -0.0021 12 6 5.8067 -4.1326 -0.0025 13 7 5.3664 -4.7566 -1.2574 14 6 5.7295 -6.1796 -1.2935 15 6 5.2632 -6.7842 -2.5928 16 6 4.0010 -7.3414 -2.6823 17 6 3.5733 -7.8954 -3.8740 18 6 4.4060 -7.8889 -4.9777 19 6 5.6695 -7.3362 -4.8867 20 6 6.5788 -7.3330 -6.0885 21 8 7.3671 -8.5249 -6.0927 22 6 6.0971 -6.7813 -3.6949 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 5.8158 -2.1704 0.8873 27 1 5.8143 -2.1711 -0.8926 28 1 5.3315 -4.6356 0.8397 29 1 6.8896 -4.2197 0.0862 30 1 4.3745 -4.6326 -1.3942 31 1 5.2541 -6.6970 -0.4602 32 1 6.8119 -6.2805 -1.2139 33 1 3.3495 -7.3437 -1.8210 34 1 2.5872 -8.3303 -3.9441 35 1 4.0703 -8.3186 -5.9099 36 1 7.2348 -6.4636 -6.0455 37 1 5.9791 -7.2909 -6.9978 38 1 7.9774 -8.5903 -6.8399 39 1 7.0828 -6.3453 -3.6252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385235124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:53 Heat of formation + Delta-G solvation = -102.668943 kcal Electronic energy + Delta-G solvation = -18984.386213 eV Core-core repulsion = 15890.541952 eV Total energy + Delta-G solvation = -3093.844261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51772 -38.94637 -37.70220 -36.65596 -34.86261 -33.04606 -32.35199 -30.60136 -29.01195 -26.89334 -25.75713 -24.00689 -22.98987 -22.75056 -21.41538 -19.06759 -18.34505 -17.72197 -17.45996 -17.02654 -16.74488 -16.48958 -16.26918 -15.73003 -15.39531 -15.11075 -14.75939 -14.56775 -14.42450 -13.95808 -13.67775 -13.43822 -13.25687 -13.03730 -12.97732 -12.70103 -12.50416 -12.18530 -11.84525 -11.83548 -11.76554 -11.36055 -10.96891 -10.93390 -10.36408 -9.79390 -9.75322 -9.36024 -8.38223 -6.46103 0.31786 0.44887 1.33145 1.36122 1.46940 2.28859 2.67568 2.94571 3.09431 3.36108 3.57315 3.79151 3.96229 4.11996 4.17148 4.19499 4.33366 4.35308 4.41323 4.51686 4.56240 4.57548 4.58671 4.67121 4.77421 4.81090 4.91336 5.01571 5.08428 5.14288 5.42995 5.51074 5.59820 5.65920 5.91792 6.01132 6.09863 6.30941 6.57746 6.73589 6.91670 7.18415 8.78873 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.003285 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.700171 B = 8522.841177 C = 8824.625497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.071 3.929 13 N -0.691 5.691 14 C 0.101 3.899 15 C -0.094 4.094 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.110 4.110 19 C -0.112 4.112 20 C 0.119 3.881 21 O -0.588 6.588 22 C -0.091 4.091 23 H 0.273 0.727 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.110 0.890 30 H 0.341 0.659 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.121 -14.306 -10.021 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.583 4.583 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.327 6.327 11 C -0.027 4.027 12 C -0.058 4.058 13 N -0.323 5.323 14 C -0.027 4.027 15 C -0.095 4.095 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.128 4.128 19 C -0.112 4.112 20 C 0.042 3.958 21 O -0.398 6.398 22 C -0.109 4.109 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.128 0.872 30 H 0.159 0.841 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.250 0.750 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.080 -14.265 -9.811 24.320 hybrid contribution -0.629 0.611 0.256 0.913 sum 16.451 -13.654 -9.555 23.417 Atomic orbital electron populations 1.70032 1.08262 1.28788 1.51078 1.25852 0.95815 1.03456 0.93456 0.85596 0.79445 0.77466 0.79760 1.18478 1.19814 1.16838 1.21170 0.90996 0.93823 1.52341 0.95164 1.20282 0.93186 0.80957 0.94970 1.87811 1.21345 1.28320 1.95269 1.22719 0.81774 0.97607 1.00609 1.21993 1.01386 0.92085 0.90354 1.60589 1.22711 1.13444 1.35516 1.20895 1.01512 0.87242 0.93058 1.19901 0.94688 0.98848 0.96042 1.21335 0.95733 0.98283 0.98783 1.21387 1.00660 0.99993 0.92796 1.21322 0.93644 0.98452 0.99384 1.19975 0.95446 1.00023 0.95736 1.20995 0.92380 0.87625 0.94768 1.86507 1.57575 1.42045 1.53643 1.21066 0.99833 0.98233 0.91782 0.91791 0.96998 0.97317 0.92144 0.92973 0.94929 0.87151 0.84097 0.94185 0.88870 0.85912 0.84201 0.84261 0.91648 0.91131 0.75021 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.01 0.72 5.47 84.66 0.46 1.19 16 3 Si 0.96 43.60 27.47 68.60 1.88 45.49 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.55 -33.48 9.99 25.60 0.26 -33.22 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.18 9.18 4.76 71.24 0.34 9.52 16 10 O -0.41 -18.82 9.85 -148.98 -1.47 -20.29 16 11 C 0.05 1.67 6.28 71.98 0.45 2.12 16 12 C 0.07 1.93 6.11 86.30 0.53 2.46 16 13 N -0.69 -20.08 6.49 -517.94 -3.36 -23.44 16 14 C 0.10 2.42 5.81 85.56 0.50 2.92 16 15 C -0.09 -2.38 5.39 -19.87 -0.11 -2.49 16 16 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 17 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 18 C -0.11 -2.37 9.70 22.27 0.22 -2.15 16 19 C -0.11 -2.48 5.51 -19.87 -0.11 -2.59 16 20 C 0.12 1.92 7.17 71.24 0.51 2.43 16 21 O -0.59 -9.71 13.64 -148.98 -2.03 -11.74 16 22 C -0.09 -2.16 9.36 22.27 0.21 -1.96 16 23 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 24 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 25 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.34 11.80 8.28 -89.70 -0.74 11.06 16 31 H 0.04 0.94 8.09 -2.39 -0.02 0.92 16 32 H 0.09 1.90 8.09 -2.38 -0.02 1.88 16 33 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 37 H 0.07 0.88 8.08 -2.38 -0.02 0.86 16 38 H 0.40 2.40 9.12 -74.06 -0.68 1.72 16 39 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -74.12 333.13 -1.42 -75.54 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.43 Total: 21.17 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.69 Total: -27.38 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.06 Total: -82.79 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -3.50 Total: -32.03 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Total: -74.12 -1.42 -75.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385235124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.129 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds