Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.42891 * 114.00002 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47115 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47343 * 179.97438 * 12 11 10 14 14 C 1.36660 * 125.60025 * 269.69619 * 13 12 11 15 15 C 1.33972 * 108.05709 * 179.90543 * 14 13 12 16 16 C 1.41462 * 107.54426 * 0.27551 * 15 14 13 17 17 C 1.33982 * 107.54092 * 359.90233 * 16 15 14 18 18 C 1.50786 * 123.50957 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.73511 * 256.85133 * 18 16 15 20 20 O 1.42898 * 109.73804 * 136.20736 * 18 16 15 21 21 C 1.53431 * 108.11813 * 16.50282 * 18 16 15 22 22 C 1.53008 * 109.82156 * 309.36363 * 21 18 16 23 23 C 1.50789 * 128.95159 * 179.81800 * 15 14 13 24 24 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 26 26 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 27 27 H 1.08994 * 109.47178 * 299.99617 * 11 10 9 28 28 H 1.09003 * 109.47664 * 60.00108 * 11 10 9 29 29 H 1.08994 * 109.46926 * 299.99944 * 12 11 10 30 30 H 1.09003 * 109.46626 * 59.99644 * 12 11 10 31 31 H 1.08004 * 125.97027 * 0.07996 * 14 13 12 32 32 H 1.08004 * 125.96749 * 179.88148 * 17 16 15 33 33 H 0.96697 * 114.00433 * 180.02562 * 20 18 16 34 34 H 1.09003 * 109.40923 * 69.46872 * 21 18 16 35 35 H 1.08998 * 109.41483 * 189.25276 * 21 18 16 36 36 H 1.08993 * 109.41011 * 192.05334 * 22 21 18 37 37 H 1.09004 * 109.40873 * 311.91111 * 22 21 18 38 38 H 1.09003 * 109.73408 * 77.38292 * 23 15 14 39 39 H 1.09001 * 109.73408 * 316.69006 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8753 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 2.0183 -7.2788 -0.0017 14 6 1.6819 -7.9997 1.1095 15 6 1.1286 -9.1511 0.7057 16 6 1.1259 -9.1498 -0.7089 17 6 1.6757 -7.9967 -1.1128 18 6 0.5810 -10.2829 -1.5413 19 1 1.4043 -10.8749 -1.9412 20 8 -0.2027 -9.7592 -2.6153 21 6 -0.2963 -11.1595 -0.6380 22 6 0.4706 -11.5236 0.6349 23 6 0.5948 -10.2895 1.5380 24 1 -0.4849 -0.8401 -0.0004 25 1 0.6247 -2.5571 0.8896 26 1 0.6242 -2.5567 -0.8904 27 1 0.9449 -4.9827 0.8886 28 1 0.9454 -4.9822 -0.8913 29 1 3.2683 -5.8487 -0.8916 30 1 3.2684 -5.8495 0.8883 31 1 1.8329 -7.6934 2.1341 32 1 1.8226 -7.6886 -2.1375 33 1 -0.5841 -10.4364 -3.1906 34 1 -1.2015 -10.6136 -0.3720 35 1 -0.5677 -12.0710 -1.1707 36 1 -0.0640 -12.3100 1.1675 37 1 1.4664 -11.8784 0.3689 38 1 -0.3844 -10.0255 1.9378 39 1 1.2825 -10.5008 2.3569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385891472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = -65.979127 kcal Electronic energy + Delta-G solvation = -19477.578117 eV Core-core repulsion = 16385.324846 eV Total energy + Delta-G solvation = -3092.253271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47219 -37.92301 -37.01641 -35.32926 -33.28819 -32.29068 -30.50468 -28.48339 -27.27220 -26.40200 -23.93825 -22.58048 -21.88940 -21.78819 -20.03767 -18.54833 -17.35464 -17.22642 -16.71391 -15.72019 -15.40337 -14.85145 -14.64569 -14.34539 -14.10654 -13.93724 -13.76675 -13.23496 -13.03756 -12.76135 -12.55044 -12.23111 -12.08747 -11.85719 -11.44874 -11.24861 -11.11298 -11.09009 -10.73599 -10.59596 -10.46068 -10.14727 -10.06548 -9.02604 -8.73313 -8.35309 -8.27901 -8.03776 -6.53452 -4.23278 2.31804 2.85886 2.93574 3.38925 3.43141 3.59740 4.26862 4.38758 4.59344 4.64826 4.69524 4.82295 4.94023 5.13078 5.17539 5.24740 5.26660 5.32958 5.43864 5.44259 5.50299 5.58859 5.68005 5.73582 5.84879 5.85382 5.90936 5.96493 6.16412 6.27751 6.51654 6.64504 7.01465 7.02671 7.26862 7.44831 7.59068 7.74522 8.06034 8.52235 8.70750 9.47604 10.86754 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040183 B = 0.003080 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.639484 B = 9088.078048 C = 9305.290461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.083 2.917 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.600 4.600 8 H 0.062 0.938 9 C 0.188 3.812 10 O -0.386 6.386 11 C 0.048 3.952 12 C 0.110 3.890 13 N -0.447 5.447 14 C -0.003 4.003 15 C -0.165 4.165 16 C -0.175 4.175 17 C 0.027 3.973 18 C 0.181 3.819 19 H 0.057 0.943 20 O -0.563 6.563 21 C -0.146 4.146 22 C -0.110 4.110 23 C -0.045 4.045 24 H 0.268 0.732 25 H -0.003 1.003 26 H -0.002 1.002 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.373 0.627 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -23.839 -0.285 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.910 3.090 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.638 4.638 8 H 0.080 0.920 9 C 0.114 3.886 10 O -0.305 6.305 11 C -0.030 4.030 12 C -0.011 4.011 13 N -0.123 5.123 14 C -0.132 4.132 15 C -0.171 4.171 16 C -0.182 4.182 17 C -0.103 4.103 18 C 0.122 3.878 19 H 0.074 0.926 20 O -0.368 6.368 21 C -0.184 4.184 22 C -0.148 4.148 23 C -0.083 4.083 24 H 0.078 0.922 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.220 0.780 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.976 -21.223 -0.003 21.315 hybrid contribution -0.390 -2.207 -0.232 2.253 sum 1.586 -23.430 -0.234 23.485 Atomic orbital electron populations 1.70775 1.06857 1.30527 1.46293 1.25987 0.96401 1.02770 0.93434 0.83348 0.74557 0.74134 0.76970 1.21166 1.21173 1.20745 1.21909 0.95508 0.90233 1.56179 0.91970 1.20345 0.89284 0.84550 0.94421 1.87817 1.35126 1.12350 1.95228 1.22529 0.94528 0.85639 1.00325 1.21649 0.95257 0.78928 1.05300 1.44155 1.47664 1.14663 1.05856 1.21305 1.06878 0.93319 0.91690 1.19241 1.07669 0.96929 0.93275 1.18916 1.08787 0.97253 0.93241 1.21338 1.04383 0.93003 0.91623 1.19985 0.91173 0.91266 0.85328 0.92565 1.86623 1.70239 1.37540 1.42399 1.22245 0.99851 0.99282 0.97002 1.21451 1.00428 0.97337 0.95553 1.20010 1.00193 0.91812 0.96264 0.92229 0.98515 0.98461 0.93845 0.93776 0.88558 0.88550 0.82207 0.82155 0.78049 0.90982 0.92066 0.91840 0.91860 0.91501 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.65 55.43 0.76 -27.25 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 3 Si 1.08 25.44 29.90 -169.99 -5.08 20.35 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.60 -17.92 9.43 -34.44 -0.32 -18.24 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.19 5.19 5.00 36.00 0.18 5.37 16 10 O -0.39 -9.32 10.33 -35.23 -0.36 -9.68 16 11 C 0.05 0.91 6.26 37.16 0.23 1.14 16 12 C 0.11 1.64 6.46 -4.04 -0.03 1.61 16 13 N -0.45 -6.44 2.76 -117.43 -0.32 -6.76 16 14 C 0.00 -0.04 11.41 -16.90 -0.19 -0.24 16 15 C -0.16 -2.14 5.92 -104.85 -0.62 -2.76 16 16 C -0.18 -2.39 5.63 -104.85 -0.59 -2.98 16 17 C 0.03 0.38 11.29 -16.90 -0.19 0.19 16 18 C 0.18 1.99 3.83 -27.62 -0.11 1.88 16 19 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 20 O -0.56 -6.38 13.24 -35.23 -0.47 -6.85 16 21 C -0.15 -1.32 5.51 -26.50 -0.15 -1.47 16 22 C -0.11 -0.94 5.86 -26.50 -0.16 -1.09 16 23 C -0.05 -0.45 6.30 -27.62 -0.17 -0.62 16 24 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 25 H 0.00 -0.08 8.01 -51.93 -0.42 -0.50 16 26 H 0.00 -0.06 8.01 -51.92 -0.42 -0.48 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 33 H 0.37 2.37 9.10 45.56 0.41 2.78 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -34.06 325.29 -8.20 -42.26 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.41 Total: -0.19 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.21 Total: -16.79 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.43 Total: -34.01 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.83 Total: -16.53 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.06 -8.20 -42.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385891472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.717 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds