Wall clock time and date at job start Mon Mar 30 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.42891 * 114.00002 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47115 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47343 * 179.97438 * 12 11 10 14 14 C 1.36660 * 125.60025 * 269.69619 * 13 12 11 15 15 C 1.33972 * 108.05709 * 179.90543 * 14 13 12 16 16 C 1.41462 * 107.54426 * 0.27551 * 15 14 13 17 17 C 1.33982 * 107.54092 * 359.90233 * 16 15 14 18 18 C 1.50786 * 123.50957 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.73511 * 256.85133 * 18 16 15 20 20 O 1.42898 * 109.73804 * 136.20736 * 18 16 15 21 21 C 1.53431 * 108.11813 * 16.50282 * 18 16 15 22 22 C 1.53008 * 109.82156 * 309.36363 * 21 18 16 23 23 C 1.50789 * 128.95159 * 179.81800 * 15 14 13 24 24 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 26 26 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 27 27 H 1.08994 * 109.47178 * 299.99617 * 11 10 9 28 28 H 1.09003 * 109.47664 * 60.00108 * 11 10 9 29 29 H 1.08994 * 109.46926 * 299.99944 * 12 11 10 30 30 H 1.09003 * 109.46626 * 59.99644 * 12 11 10 31 31 H 1.08004 * 125.97027 * 0.07996 * 14 13 12 32 32 H 1.08004 * 125.96749 * 179.88148 * 17 16 15 33 33 H 0.96697 * 114.00433 * 180.02562 * 20 18 16 34 34 H 1.09003 * 109.40923 * 69.46872 * 21 18 16 35 35 H 1.08998 * 109.41483 * 189.25276 * 21 18 16 36 36 H 1.08993 * 109.41011 * 192.05334 * 22 21 18 37 37 H 1.09004 * 109.40873 * 311.91111 * 22 21 18 38 38 H 1.09003 * 109.73408 * 77.38292 * 23 15 14 39 39 H 1.09001 * 109.73408 * 316.69006 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5853 -0.0005 11 6 1.5652 -4.8753 -0.0011 12 6 2.6482 -5.9562 -0.0017 13 7 2.0183 -7.2788 -0.0017 14 6 1.6819 -7.9997 1.1095 15 6 1.1286 -9.1511 0.7057 16 6 1.1259 -9.1498 -0.7089 17 6 1.6757 -7.9967 -1.1128 18 6 0.5810 -10.2829 -1.5413 19 1 1.4043 -10.8749 -1.9412 20 8 -0.2027 -9.7592 -2.6153 21 6 -0.2963 -11.1595 -0.6380 22 6 0.4706 -11.5236 0.6349 23 6 0.5948 -10.2895 1.5380 24 1 -0.4849 -0.8401 -0.0004 25 1 0.6247 -2.5571 0.8896 26 1 0.6242 -2.5567 -0.8904 27 1 0.9449 -4.9827 0.8886 28 1 0.9454 -4.9822 -0.8913 29 1 3.2683 -5.8487 -0.8916 30 1 3.2684 -5.8495 0.8883 31 1 1.8329 -7.6934 2.1341 32 1 1.8226 -7.6886 -2.1375 33 1 -0.5841 -10.4364 -3.1906 34 1 -1.2015 -10.6136 -0.3720 35 1 -0.5677 -12.0710 -1.1707 36 1 -0.0640 -12.3100 1.1675 37 1 1.4664 -11.8784 0.3689 38 1 -0.3844 -10.0255 1.9378 39 1 1.2825 -10.5008 2.3569 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385891472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:16 Heat of formation + Delta-G solvation = -88.560166 kcal Electronic energy + Delta-G solvation = -19478.557304 eV Core-core repulsion = 16385.324846 eV Total energy + Delta-G solvation = -3093.232458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48945 -39.17198 -38.49114 -36.21904 -35.37224 -33.60369 -31.40241 -29.95236 -28.35192 -28.13249 -25.19770 -24.73286 -23.01984 -22.60128 -21.07438 -19.45914 -19.30456 -18.19832 -18.13247 -17.27347 -17.08039 -16.13258 -15.68927 -15.59675 -15.35777 -15.11277 -15.00062 -14.57796 -14.34424 -14.16524 -13.95626 -13.56752 -13.08271 -13.04875 -12.88076 -12.80146 -12.48199 -12.33552 -11.92458 -11.90348 -11.81764 -11.36466 -11.00659 -10.94198 -10.85851 -10.52095 -9.32313 -9.07486 -8.90105 -6.62661 1.21590 1.51074 1.60693 1.76780 1.81489 1.87959 2.47051 2.97588 3.01715 3.52043 3.57716 3.88474 3.89859 3.94513 4.08959 4.10136 4.13053 4.30803 4.34830 4.36124 4.44237 4.55140 4.59606 4.65956 4.75403 4.82465 4.88995 5.04822 5.07774 5.17610 5.36129 5.46799 5.54524 5.56517 5.81171 6.03878 6.23194 6.23782 6.37904 6.45931 6.98349 7.18785 8.50726 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040183 B = 0.003080 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.639484 B = 9088.078048 C = 9305.290461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.029 4.029 3 Si 1.133 2.867 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.627 4.627 8 H 0.059 0.941 9 C 0.197 3.803 10 O -0.396 6.396 11 C 0.047 3.953 12 C 0.124 3.876 13 N -0.453 5.453 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.186 4.186 17 C 0.000 4.000 18 C 0.178 3.822 19 H 0.070 0.930 20 O -0.586 6.586 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.047 4.047 24 H 0.255 0.745 25 H -0.015 1.015 26 H -0.017 1.017 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.393 0.607 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 -24.947 0.076 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.226 4.226 3 Si 0.951 3.049 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.664 4.664 8 H 0.077 0.923 9 C 0.122 3.878 10 O -0.315 6.315 11 C -0.031 4.031 12 C 0.002 3.998 13 N -0.131 5.131 14 C -0.147 4.147 15 C -0.178 4.178 16 C -0.193 4.193 17 C -0.129 4.129 18 C 0.119 3.881 19 H 0.087 0.913 20 O -0.394 6.394 21 C -0.179 4.179 22 C -0.145 4.145 23 C -0.085 4.085 24 H 0.064 0.936 25 H 0.002 0.998 26 H 0.000 1.000 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.195 0.805 32 H 0.180 0.820 33 H 0.243 0.757 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.718 -22.399 0.353 22.566 hybrid contribution -0.683 -1.996 -0.368 2.141 sum 2.035 -24.395 -0.015 24.479 Atomic orbital electron populations 1.70905 1.07842 1.29855 1.47692 1.27712 0.96418 1.06757 0.91737 0.82763 0.74003 0.69798 0.78321 1.19097 1.19221 1.20066 1.22279 0.95644 0.91672 1.56821 0.92270 1.20033 0.89214 0.85513 0.93039 1.87758 1.34903 1.13616 1.95199 1.22741 0.96057 0.84392 0.99885 1.21472 0.93775 0.78018 1.06516 1.44144 1.48364 1.14315 1.06286 1.21762 1.07052 0.93645 0.92237 1.19703 1.06957 0.97577 0.93525 1.19444 1.07973 0.97652 0.94217 1.21582 1.05573 0.93845 0.91878 1.20109 0.91965 0.90555 0.85468 0.91254 1.86563 1.70522 1.39283 1.43042 1.22208 0.98696 0.99729 0.97226 1.21468 1.00863 0.97076 0.95123 1.20127 1.00310 0.91436 0.96603 0.93568 0.99777 0.99979 0.93942 0.94503 0.87675 0.87075 0.80549 0.82035 0.75691 0.92654 0.89418 0.89701 0.91537 0.91479 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.65 21.45 0.29 -57.41 16 2 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 3 Si 1.13 50.12 29.90 68.60 2.05 52.17 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.63 -37.81 9.43 25.60 0.24 -37.57 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.20 11.17 5.00 71.23 0.36 11.52 16 10 O -0.40 -19.40 10.33 -148.98 -1.54 -20.93 16 11 C 0.05 1.81 6.26 71.98 0.45 2.26 16 12 C 0.12 3.64 6.46 86.38 0.56 4.20 16 13 N -0.45 -12.94 2.76 -525.43 -1.45 -14.39 16 14 C -0.02 -0.50 11.41 82.97 0.95 0.44 16 15 C -0.17 -4.27 5.92 -20.01 -0.12 -4.39 16 16 C -0.19 -4.96 5.63 -20.01 -0.11 -5.07 16 17 C 0.00 0.01 11.29 82.97 0.94 0.95 16 18 C 0.18 3.65 3.83 30.02 0.11 3.77 16 19 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 20 O -0.59 -12.74 13.24 -148.98 -1.97 -14.71 16 21 C -0.14 -2.25 5.51 30.74 0.17 -2.08 16 22 C -0.11 -1.56 5.86 30.74 0.18 -1.38 16 23 C -0.05 -0.85 6.30 30.02 0.19 -0.67 16 24 H 0.26 16.10 7.22 -92.71 -0.67 15.43 16 25 H -0.02 -0.89 8.01 -2.38 -0.02 -0.91 16 26 H -0.02 -1.02 8.01 -2.38 -0.02 -1.04 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.39 4.44 9.10 -74.06 -0.67 3.77 16 34 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.94 8.10 -2.38 -0.02 0.92 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.20 325.29 2.21 -70.99 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.46 Total: 13.52 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.37 Total: -29.23 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -1.16 Total: -71.81 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -3.51 Total: -35.64 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal Total: -73.20 2.21 -70.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385891472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.568 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds