Wall clock time and date at job start Mon Mar 30 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48499 * 109.46827 * 239.99737 * 3 2 1 5 5 H 1.48501 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47066 * 120.00066 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45965 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31315 * 178.61587 * 10 9 7 12 12 N 1.46929 * 108.77486 * 54.63188 * 11 10 9 13 13 C 1.34783 * 120.62687 * 126.36877 * 12 11 10 14 14 O 1.21278 * 119.99717 * 0.02562 * 13 12 11 15 15 C 1.50692 * 119.99576 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.51333 * 34.63608 * 15 13 12 17 17 C 1.53008 * 117.43112 * 180.02562 * 15 13 12 18 18 H 1.09001 * 119.80585 * 355.36851 * 17 15 13 19 19 C 1.54476 * 118.06504 * 199.10466 * 17 15 13 20 20 O 1.44421 * 104.80395 * 321.12750 * 19 17 15 21 21 C 1.44427 * 105.27980 * 319.49236 * 20 19 17 22 22 C 1.53000 * 117.43323 * 249.34639 * 15 13 12 23 23 H 1.08999 * 119.80771 * 4.63897 * 22 15 13 24 24 C 1.46918 * 118.73922 * 306.39780 * 12 11 10 25 25 C 1.53043 * 109.45658 * 59.93466 * 9 7 2 26 26 H 0.97004 * 119.99688 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.44738 * 299.96733 * 9 7 2 28 28 H 1.08998 * 109.49886 * 58.66484 * 10 9 7 29 29 H 1.08996 * 109.49996 * 298.56847 * 10 9 7 30 30 H 1.08998 * 109.58804 * 174.42625 * 11 10 9 31 31 H 1.09003 * 109.58394 * 294.85202 * 11 10 9 32 32 H 1.08998 * 110.37320 * 79.96064 * 19 17 15 33 33 H 1.09009 * 110.36831 * 202.29928 * 19 17 15 34 34 H 1.08994 * 110.37355 * 159.34461 * 21 20 19 35 35 H 1.08997 * 110.36763 * 281.56845 * 21 20 19 36 36 H 1.09008 * 109.58859 * 293.81127 * 24 12 11 37 37 H 1.09002 * 109.58786 * 173.39329 * 24 12 11 38 38 H 1.09003 * 109.49674 * 301.33433 * 25 9 7 39 39 H 1.08990 * 109.49664 * 61.43549 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0027 11 6 1.4766 -4.9866 0.0388 12 7 0.5221 -5.0098 -1.0780 13 6 0.5118 -6.0365 -1.9512 14 8 1.2951 -6.9529 -1.8189 15 6 -0.4729 -6.0454 -3.0919 16 1 -0.7081 -5.0696 -3.5167 17 6 -0.4336 -7.2397 -4.0476 18 1 0.3375 -8.0013 -3.9316 19 6 -1.0853 -7.0788 -5.4389 20 8 -2.2798 -6.3032 -5.1994 21 6 -2.8328 -6.8253 -3.9716 22 6 -1.5973 -7.0819 -3.0443 23 1 -1.7053 -7.7245 -2.1704 24 6 -0.4203 -3.8924 -1.2251 25 6 0.3695 -2.5800 -1.2468 26 1 -0.4850 0.8401 -0.0004 27 1 0.6252 -2.5561 0.8924 28 1 2.8882 -3.5906 0.8803 29 1 2.8555 -3.6201 -0.8996 30 1 2.1750 -5.8176 -0.0600 31 1 0.9371 -5.0702 0.9823 32 1 -0.4149 -6.5450 -6.1125 33 1 -1.3426 -8.0541 -5.8524 34 1 -3.5048 -6.0967 -3.5182 35 1 -3.3598 -7.7605 -4.1604 36 1 -1.1146 -3.8869 -0.3847 37 1 -0.9736 -4.0014 -2.1579 38 1 -0.3230 -1.7383 -1.2583 39 1 0.9967 -2.5480 -2.1376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397234993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:02 Heat of formation + Delta-G solvation = -52.058343 kcal Electronic energy + Delta-G solvation = -20555.086190 eV Core-core repulsion = 17463.436570 eV Total energy + Delta-G solvation = -3091.649620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77413 -39.12204 -36.83687 -34.41838 -33.51500 -31.28248 -30.12401 -28.79455 -26.96939 -25.76813 -23.27753 -22.49111 -21.42618 -20.78595 -19.48055 -18.42263 -17.36433 -16.38325 -16.06397 -15.87696 -15.34778 -15.01097 -14.67249 -14.56746 -13.63063 -13.26807 -13.10983 -12.82585 -12.74725 -12.52443 -12.29800 -11.86169 -11.69600 -11.62393 -11.29514 -10.93569 -10.68318 -10.41971 -10.38422 -10.31125 -10.13018 -9.82914 -9.66172 -9.42070 -9.19708 -8.94125 -8.39403 -8.03687 -6.04479 -4.10744 2.62576 3.23284 3.29236 3.34046 3.37052 3.59233 3.82535 4.39875 4.44115 4.54487 4.65969 4.71577 5.05774 5.19424 5.23892 5.26885 5.42964 5.51597 5.56932 5.63248 5.75446 5.79847 5.89238 6.04091 6.08392 6.11808 6.29406 6.42640 6.53679 6.63369 6.86283 7.01280 7.12350 7.25781 7.64386 7.88280 7.89928 8.02150 8.38440 8.50284 8.92335 9.54480 11.01065 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027745 B = 0.004712 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.932700 B = 5940.869659 C = 6509.760451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.592 5.592 13 C 0.542 3.458 14 O -0.560 6.560 15 C -0.142 4.142 16 H 0.129 0.871 17 C -0.171 4.171 18 H 0.134 0.866 19 C 0.072 3.928 20 O -0.372 6.372 21 C 0.072 3.928 22 C -0.173 4.173 23 H 0.130 0.870 24 C 0.102 3.898 25 C -0.125 4.125 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -12.390 -6.609 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.323 5.323 13 C 0.329 3.671 14 O -0.440 6.440 15 C -0.163 4.163 16 H 0.147 0.853 17 C -0.189 4.189 18 H 0.151 0.849 19 C -0.005 4.005 20 O -0.291 6.291 21 C -0.004 4.004 22 C -0.192 4.192 23 H 0.148 0.852 24 C -0.020 4.020 25 C -0.164 4.164 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.256 -12.545 -6.655 15.142 hybrid contribution 0.575 0.905 0.213 1.093 sum -4.681 -11.640 -6.442 14.104 Atomic orbital electron populations 1.69823 1.05855 1.26610 1.50806 1.24953 0.94871 0.99045 0.95020 0.86671 0.79637 0.83152 0.78626 1.20328 1.21283 1.20303 1.21166 0.92920 0.90576 1.50485 0.92752 1.18633 0.92634 0.91722 0.93993 1.22014 0.98938 0.94175 1.01034 1.21729 0.91729 0.99815 0.87788 1.48155 1.35789 1.20886 1.27508 1.19386 0.83608 0.81923 0.82144 1.90628 1.41753 1.36712 1.74885 1.22155 0.98859 0.96998 0.98273 0.85303 1.23980 1.01643 1.01443 0.91871 0.84863 1.22981 0.86023 0.96440 0.95009 1.89180 1.40125 1.58378 1.41369 1.23327 0.94099 0.99769 0.83243 1.24434 0.90669 1.02741 1.01346 0.85226 1.22109 0.91581 0.87344 1.00958 1.22039 1.00096 0.94625 0.99591 0.92892 0.95449 0.92072 0.92938 0.90356 0.92095 0.88436 0.90980 0.88320 0.91045 0.91842 0.91141 0.87653 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 11.30 55.43 0.63 -23.72 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 11 C 0.11 2.05 6.43 -3.71 -0.02 2.03 16 12 N -0.59 -10.75 2.97 -172.77 -0.51 -11.27 16 13 C 0.54 9.57 7.48 -10.99 -0.08 9.49 16 14 O -0.56 -11.26 15.75 5.56 0.09 -11.17 16 15 C -0.14 -2.03 4.46 -91.77 -0.41 -2.44 16 16 H 0.13 1.86 6.48 -51.93 -0.34 1.53 16 17 C -0.17 -2.07 6.64 -89.07 -0.59 -2.66 16 18 H 0.13 1.68 7.81 -51.93 -0.41 1.28 16 19 C 0.07 0.74 7.53 37.93 0.29 1.02 16 20 O -0.37 -4.48 11.30 -35.23 -0.40 -4.88 16 21 C 0.07 0.72 7.58 39.10 0.30 1.02 16 22 C -0.17 -2.00 7.12 -87.91 -0.63 -2.63 16 23 H 0.13 1.45 8.14 -51.93 -0.42 1.02 16 24 C 0.10 1.83 6.34 -3.72 -0.02 1.81 16 25 C -0.13 -2.75 5.15 -26.61 -0.14 -2.89 16 26 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 37 H 0.07 1.11 5.52 -51.93 -0.29 0.83 16 38 H 0.11 2.57 6.03 -51.93 -0.31 2.26 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -29.42 310.61 -8.47 -37.89 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.90 Total: 2.03 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.03 Total: -9.35 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.11 Total: -34.99 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.31 Total: -16.05 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.42 -8.47 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397234993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.171 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds