Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48499 * 109.46827 * 239.99737 * 3 2 1 5 5 H 1.48501 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47066 * 120.00066 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00131 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.45965 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31315 * 178.61587 * 10 9 7 12 12 N 1.46929 * 108.77486 * 54.63188 * 11 10 9 13 13 C 1.34783 * 120.62687 * 126.36877 * 12 11 10 14 14 O 1.21278 * 119.99717 * 0.02562 * 13 12 11 15 15 C 1.50692 * 119.99576 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.51333 * 34.63608 * 15 13 12 17 17 C 1.53008 * 117.43112 * 180.02562 * 15 13 12 18 18 H 1.09001 * 119.80585 * 355.36851 * 17 15 13 19 19 C 1.54476 * 118.06504 * 199.10466 * 17 15 13 20 20 O 1.44421 * 104.80395 * 321.12750 * 19 17 15 21 21 C 1.44427 * 105.27980 * 319.49236 * 20 19 17 22 22 C 1.53000 * 117.43323 * 249.34639 * 15 13 12 23 23 H 1.08999 * 119.80771 * 4.63897 * 22 15 13 24 24 C 1.46918 * 118.73922 * 306.39780 * 12 11 10 25 25 C 1.53043 * 109.45658 * 59.93466 * 9 7 2 26 26 H 0.97004 * 119.99688 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.44738 * 299.96733 * 9 7 2 28 28 H 1.08998 * 109.49886 * 58.66484 * 10 9 7 29 29 H 1.08996 * 109.49996 * 298.56847 * 10 9 7 30 30 H 1.08998 * 109.58804 * 174.42625 * 11 10 9 31 31 H 1.09003 * 109.58394 * 294.85202 * 11 10 9 32 32 H 1.08998 * 110.37320 * 79.96064 * 19 17 15 33 33 H 1.09009 * 110.36831 * 202.29928 * 19 17 15 34 34 H 1.08994 * 110.37355 * 159.34461 * 21 20 19 35 35 H 1.08997 * 110.36763 * 281.56845 * 21 20 19 36 36 H 1.09008 * 109.58859 * 293.81127 * 24 12 11 37 37 H 1.09002 * 109.58786 * 173.39329 * 24 12 11 38 38 H 1.09003 * 109.49674 * 301.33433 * 25 9 7 39 39 H 1.08990 * 109.49664 * 61.43549 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0027 11 6 1.4766 -4.9866 0.0388 12 7 0.5221 -5.0098 -1.0780 13 6 0.5118 -6.0365 -1.9512 14 8 1.2951 -6.9529 -1.8189 15 6 -0.4729 -6.0454 -3.0919 16 1 -0.7081 -5.0696 -3.5167 17 6 -0.4336 -7.2397 -4.0476 18 1 0.3375 -8.0013 -3.9316 19 6 -1.0853 -7.0788 -5.4389 20 8 -2.2798 -6.3032 -5.1994 21 6 -2.8328 -6.8253 -3.9716 22 6 -1.5973 -7.0819 -3.0443 23 1 -1.7053 -7.7245 -2.1704 24 6 -0.4203 -3.8924 -1.2251 25 6 0.3695 -2.5800 -1.2468 26 1 -0.4850 0.8401 -0.0004 27 1 0.6252 -2.5561 0.8924 28 1 2.8882 -3.5906 0.8803 29 1 2.8555 -3.6201 -0.8996 30 1 2.1750 -5.8176 -0.0600 31 1 0.9371 -5.0702 0.9823 32 1 -0.4149 -6.5450 -6.1125 33 1 -1.3426 -8.0541 -5.8524 34 1 -3.5048 -6.0967 -3.5182 35 1 -3.3598 -7.7605 -4.1604 36 1 -1.1146 -3.8869 -0.3847 37 1 -0.9736 -4.0014 -2.1579 38 1 -0.3230 -1.7383 -1.2583 39 1 0.9967 -2.5480 -2.1376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397234993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -69.263774 kcal Electronic energy + Delta-G solvation = -20555.832274 eV Core-core repulsion = 17463.436570 eV Total energy + Delta-G solvation = -3092.395704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.86217 -40.39124 -38.41559 -35.42897 -35.33159 -33.06401 -31.77649 -29.57530 -28.45781 -27.18299 -24.83692 -24.07363 -22.75909 -21.67581 -21.01103 -19.78256 -18.81187 -18.18735 -17.32112 -16.86188 -16.51967 -16.35654 -16.12782 -15.89564 -15.00547 -14.85834 -14.65218 -14.56851 -13.99323 -13.90495 -13.49813 -13.27860 -13.09685 -12.81107 -12.76784 -12.53599 -12.47313 -12.16070 -11.97403 -11.50945 -11.38054 -11.22070 -11.04959 -11.03233 -10.69277 -10.58601 -10.39959 -9.60035 -8.08513 -6.21865 1.35010 1.42759 1.43351 1.50705 1.93622 2.43821 2.54683 2.90978 3.18143 3.44384 3.60472 3.68352 3.79797 3.92042 4.16552 4.21327 4.27810 4.37466 4.46342 4.51833 4.54532 4.69823 4.71238 4.78608 4.83291 4.84930 4.89441 4.95298 4.99484 5.16098 5.22289 5.40728 5.51641 5.63435 5.76097 5.96868 6.11021 6.37827 6.44305 6.87115 7.09095 7.45933 8.94901 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.027745 B = 0.004712 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.932700 B = 5940.869659 C = 6509.760451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.116 3.884 12 N -0.598 5.598 13 C 0.541 3.459 14 O -0.587 6.587 15 C -0.164 4.164 16 H 0.127 0.873 17 C -0.168 4.168 18 H 0.127 0.873 19 C 0.075 3.925 20 O -0.393 6.393 21 C 0.074 3.926 22 C -0.157 4.157 23 H 0.136 0.864 24 C 0.116 3.884 25 C -0.116 4.116 26 H 0.262 0.738 27 H 0.005 0.995 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -13.302 -7.431 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.006 4.006 12 N -0.328 5.328 13 C 0.331 3.669 14 O -0.469 6.469 15 C -0.185 4.185 16 H 0.144 0.856 17 C -0.187 4.187 18 H 0.145 0.855 19 C -0.001 4.001 20 O -0.312 6.312 21 C -0.002 4.002 22 C -0.175 4.175 23 H 0.153 0.847 24 C -0.006 4.006 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.183 -13.462 -7.480 16.595 hybrid contribution 0.887 1.174 0.479 1.547 sum -5.297 -12.287 -7.001 15.101 Atomic orbital electron populations 1.69934 1.06812 1.27259 1.51059 1.25623 0.95693 1.01918 0.94749 0.85763 0.78550 0.79637 0.78590 1.20119 1.20734 1.19919 1.21516 0.92905 0.92282 1.50872 0.93491 1.18606 0.93032 0.91930 0.93722 1.21859 0.98345 0.94334 1.00648 1.21630 0.91937 0.98313 0.88723 1.48197 1.35757 1.21180 1.27694 1.19919 0.83625 0.81054 0.82320 1.90607 1.42968 1.37643 1.75657 1.22041 1.00243 0.98021 0.98174 0.85557 1.24059 1.01834 0.99567 0.93192 0.85487 1.23116 0.85497 0.97718 0.93803 1.89166 1.40651 1.59264 1.42102 1.23514 0.93260 1.01350 0.82100 1.24579 0.90997 1.00448 1.01511 0.84658 1.21934 0.90948 0.85157 1.02590 1.21808 0.99425 0.96192 0.98051 0.92855 0.97663 0.91587 0.94142 0.90098 0.90861 0.88026 0.88329 0.87451 0.88340 0.91260 0.88622 0.90054 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.28 11.30 21.45 0.24 -50.04 16 2 C 0.02 1.04 5.30 84.66 0.45 1.49 16 3 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.11 8.56 25.60 0.22 -28.89 16 8 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 9 C 0.05 2.20 2.06 -11.51 -0.02 2.18 16 10 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 11 C 0.12 4.23 6.43 86.36 0.56 4.79 16 12 N -0.60 -21.30 2.97 -818.90 -2.43 -23.73 16 13 C 0.54 18.65 7.48 87.65 0.66 19.30 16 14 O -0.59 -23.24 15.75 -3.02 -0.05 -23.29 16 15 C -0.16 -4.44 4.46 -11.54 -0.05 -4.49 16 16 H 0.13 3.48 6.48 -2.39 -0.02 3.46 16 17 C -0.17 -3.74 6.64 -9.79 -0.06 -3.80 16 18 H 0.13 3.02 7.81 -2.39 -0.02 3.00 16 19 C 0.07 1.33 7.53 72.48 0.55 1.88 16 20 O -0.39 -8.37 11.30 -148.98 -1.68 -10.05 16 21 C 0.07 1.23 7.58 73.24 0.55 1.78 16 22 C -0.16 -3.23 7.12 -9.04 -0.06 -3.29 16 23 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 24 C 0.12 4.07 6.34 86.36 0.55 4.62 16 25 C -0.12 -5.18 5.15 30.67 0.16 -5.03 16 26 H 0.26 13.83 8.31 -92.70 -0.77 13.06 16 27 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.93 7.00 -2.39 -0.02 2.91 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.25 8.14 -2.38 -0.02 1.24 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.10 2.90 5.52 -2.39 -0.01 2.89 16 38 H 0.08 4.05 6.03 -2.39 -0.01 4.04 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -63.04 310.61 2.78 -60.26 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 1.04 Total: 16.02 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.64 Total: -14.02 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -2.19 Total: -73.77 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.73 Total: -33.34 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.04 2.78 -60.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397234993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.006 kcal (2) G-P(sol) polarization free energy of solvation -63.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds