Wall clock time and date at job start Mon Mar 30 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99945 * 2 1 4 4 H 1.08996 * 110.91519 * 327.54829 * 3 2 1 5 5 C 1.54908 * 111.00692 * 91.45699 * 3 2 1 6 6 N 1.47423 * 104.93112 * 155.13604 * 5 3 2 7 7 C 1.34773 * 125.64841 * 155.83269 * 6 5 3 8 8 O 1.21689 * 119.99921 * 179.97438 * 7 6 5 9 9 C 1.46371 * 120.00148 * 359.97438 * 7 6 5 10 10 H 1.08003 * 120.00180 * 354.00641 * 9 7 6 11 11 C 1.40054 * 119.99973 * 174.00132 * 9 7 6 12 12 N 1.30666 * 119.99976 * 6.18210 * 11 9 7 13 13 Si 1.86799 * 119.99867 * 186.18720 * 11 9 7 14 14 H 1.48501 * 109.47416 * 94.98224 * 13 11 9 15 15 H 1.48496 * 109.47079 * 214.98541 * 13 11 9 16 16 H 1.48507 * 109.47107 * 334.97870 * 13 11 9 17 17 C 1.47025 * 108.70254 * 335.81726 * 6 5 3 18 18 C 1.54329 * 107.26895 * 1.05792 * 17 6 5 19 19 H 1.09004 * 110.71729 * 263.65064 * 18 17 6 20 20 N 1.46505 * 110.71713 * 140.56072 * 18 17 6 21 21 C 1.34941 * 126.03516 * 326.45063 * 20 18 17 22 22 C 1.35318 * 107.74260 * 179.97438 * 21 20 18 23 23 C 1.39866 * 107.92131 * 359.97438 * 22 21 20 24 24 N 1.30835 * 108.20221 * 359.74571 * 23 22 21 25 25 H 1.09008 * 109.47060 * 300.00090 * 1 2 3 26 26 H 1.08997 * 109.47171 * 60.00049 * 1 2 3 27 27 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09000 * 110.36392 * 36.23766 * 5 3 2 29 29 H 1.09002 * 110.36373 * 274.02890 * 5 3 2 30 30 H 0.96997 * 120.00051 * 180.02562 * 12 11 9 31 31 H 1.08992 * 109.88252 * 120.47414 * 17 6 5 32 32 H 1.08998 * 109.87725 * 241.48898 * 17 6 5 33 33 H 1.07996 * 126.13308 * 359.97438 * 21 20 18 34 34 H 1.08006 * 126.03918 * 180.02562 * 22 21 20 35 35 H 1.07999 * 125.89604 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0103 -0.5463 5 6 2.2697 1.7978 1.4457 6 7 3.3602 2.7820 1.3218 7 6 3.6159 3.7841 2.1860 8 8 4.5476 4.5400 1.9827 9 6 2.7729 3.9631 3.3691 10 1 1.8898 3.3552 3.5000 11 6 3.1114 4.9227 4.3314 12 7 4.1084 5.7397 4.1169 13 14 2.1377 5.0346 5.9216 14 1 2.8232 4.2481 6.9783 15 1 2.0425 6.4548 6.3448 16 1 0.7730 4.4900 5.7058 17 6 4.1230 2.4891 0.0994 18 6 3.4523 1.2763 -0.5796 19 1 3.9614 0.3517 -0.3075 20 7 3.4293 1.4443 -2.0348 21 6 3.2983 2.6126 -2.6971 22 6 3.3249 2.3406 -4.0224 23 6 3.4780 0.9588 -4.1751 24 7 3.5465 0.4211 -2.9844 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.5788 0.9667 2.0796 29 1 1.3756 2.2713 1.8513 30 1 4.3430 6.4040 4.7835 31 1 4.0967 3.3496 -0.5690 32 1 5.1552 2.2498 0.3551 33 1 3.1913 3.5897 -2.2497 34 1 3.2432 3.0631 -4.8211 35 1 3.5340 0.4279 -5.1139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:50 Heat of formation + Delta-G solvation = 14.099056 kcal Electronic energy + Delta-G solvation = -20229.679362 eV Core-core repulsion = 17037.358199 eV Total energy + Delta-G solvation = -3192.321164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15881 -39.05210 -37.22106 -35.44638 -32.70701 -32.45566 -30.00279 -29.02227 -28.20208 -26.42697 -26.06206 -23.20359 -21.81742 -20.99738 -20.04730 -19.25859 -17.52308 -17.19140 -16.19437 -15.66168 -15.21712 -15.02130 -14.62056 -14.39966 -14.14807 -13.86384 -13.62500 -13.17794 -12.94356 -12.45483 -12.40239 -11.98811 -11.77923 -11.48082 -11.43656 -11.26245 -11.00380 -10.79387 -10.58910 -10.44396 -10.30012 -9.81255 -9.22582 -8.97090 -8.47200 -7.83236 -7.49050 -6.35099 -4.79516 2.00341 2.50698 2.95477 3.06244 3.13776 3.16834 3.54789 3.98479 4.38545 4.43044 4.52364 4.64679 4.94505 5.00103 5.03352 5.20143 5.27926 5.38875 5.45506 5.57091 5.63940 5.69311 5.84778 6.00890 6.04351 6.12229 6.18106 6.26651 6.74808 6.97480 7.13028 7.18575 7.31033 7.83148 7.90035 8.19958 8.87749 9.23458 10.39301 10.58800 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026236 B = 0.005378 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.977290 B = 5205.494946 C = 6001.710216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.066 3.934 4 H 0.079 0.921 5 C 0.102 3.898 6 N -0.640 5.640 7 C 0.572 3.428 8 O -0.570 6.570 9 C -0.538 4.538 10 H 0.071 0.929 11 C 0.087 3.913 12 N -0.765 5.765 13 Si 0.910 3.090 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.264 1.264 17 C 0.112 3.888 18 C 0.152 3.848 19 H 0.122 0.878 20 N -0.356 5.356 21 C 0.057 3.943 22 C -0.279 4.279 23 C 0.037 3.963 24 N -0.290 5.290 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.271 0.729 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.145 0.855 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -7.858 -9.759 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C 0.006 3.994 4 H 0.097 0.903 5 C -0.024 4.024 6 N -0.383 5.383 7 C 0.379 3.621 8 O -0.452 6.452 9 C -0.574 4.574 10 H 0.090 0.910 11 C -0.133 4.133 12 N -0.393 5.393 13 Si 0.735 3.265 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.013 4.013 18 C 0.049 3.951 19 H 0.140 0.860 20 N -0.138 5.138 21 C -0.089 4.089 22 C -0.309 4.309 23 C -0.149 4.149 24 N -0.111 5.111 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.191 0.809 34 H 0.163 0.837 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.497 -8.467 -8.934 13.480 hybrid contribution -0.829 0.999 0.232 1.319 sum -6.325 -7.468 -8.702 13.095 Atomic orbital electron populations 1.22788 0.80785 1.02695 1.00156 1.87903 1.19904 1.26205 1.94873 1.23831 0.93271 0.85311 0.97034 0.90327 1.22330 0.92926 0.93037 0.94076 1.48703 1.31684 1.33199 1.24666 1.18126 0.85053 0.77342 0.81537 1.90636 1.33763 1.45197 1.75582 1.20849 1.10975 1.21195 1.04408 0.91040 1.25730 0.94568 0.93826 0.99180 1.70007 1.23074 1.13265 1.32932 0.86309 0.80479 0.78085 0.81663 1.19628 1.20313 1.18793 1.21759 0.96373 0.94072 0.89089 1.22457 0.96666 1.01827 0.74138 0.85971 1.48653 1.55047 1.04402 1.05680 1.22616 1.00876 0.92336 0.93091 1.21457 1.17456 0.96361 0.95619 1.23855 1.00613 0.94061 0.96398 1.77389 1.23571 1.12736 0.97413 0.93513 0.94269 0.89563 0.91606 0.90168 0.91836 0.91729 0.91166 0.80908 0.83705 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.89 101.05 1.10 1.47 16 2 O -0.37 -5.55 10.52 -35.23 -0.37 -5.92 16 3 C 0.07 1.02 3.19 -24.43 -0.08 0.94 16 4 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 5 C 0.10 1.81 6.29 -2.53 -0.02 1.80 16 6 N -0.64 -13.97 3.33 -172.18 -0.57 -14.54 16 7 C 0.57 15.75 7.77 -12.99 -0.10 15.65 16 8 O -0.57 -17.96 15.37 5.20 0.08 -17.88 16 9 C -0.54 -14.55 8.99 -35.63 -0.32 -14.88 16 10 H 0.07 1.77 6.60 -52.48 -0.35 1.42 16 11 C 0.09 2.35 5.49 -17.37 -0.10 2.25 16 12 N -0.76 -22.17 11.85 55.55 0.66 -21.51 16 13 Si 0.91 19.38 29.56 -169.99 -5.03 14.36 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 C 0.11 2.10 6.49 -3.06 -0.02 2.08 16 18 C 0.15 2.44 3.81 -65.93 -0.25 2.19 16 19 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 20 N -0.36 -5.57 3.63 -52.93 -0.19 -5.76 16 21 C 0.06 0.81 10.42 -17.23 -0.18 0.63 16 22 C -0.28 -3.51 10.80 -40.01 -0.43 -3.94 16 23 C 0.04 0.48 12.03 -17.37 -0.21 0.27 16 24 N -0.29 -4.61 12.58 30.62 0.39 -4.22 16 25 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.42 7.07 -51.93 -0.37 1.05 16 30 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 31 H 0.06 1.20 6.01 -51.93 -0.31 0.89 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.17 2.24 7.01 -52.49 -0.37 1.87 16 34 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -34.05 302.15 -5.40 -39.46 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.32 Total: 3.02 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.60 Total: 8.45 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.28 Total: -46.03 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.29 Total: -23.81 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.05 -5.40 -39.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.557 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds