Wall clock time and date at job start Mon Mar 30 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99945 * 2 1 4 4 H 1.08996 * 110.91519 * 327.54829 * 3 2 1 5 5 C 1.54908 * 111.00692 * 91.45699 * 3 2 1 6 6 N 1.47423 * 104.93112 * 155.13604 * 5 3 2 7 7 C 1.34773 * 125.64841 * 155.83269 * 6 5 3 8 8 O 1.21689 * 119.99921 * 179.97438 * 7 6 5 9 9 C 1.46371 * 120.00148 * 359.97438 * 7 6 5 10 10 H 1.08003 * 120.00180 * 354.00641 * 9 7 6 11 11 C 1.40054 * 119.99973 * 174.00132 * 9 7 6 12 12 N 1.30666 * 119.99976 * 6.18210 * 11 9 7 13 13 Si 1.86799 * 119.99867 * 186.18720 * 11 9 7 14 14 H 1.48501 * 109.47416 * 94.98224 * 13 11 9 15 15 H 1.48496 * 109.47079 * 214.98541 * 13 11 9 16 16 H 1.48507 * 109.47107 * 334.97870 * 13 11 9 17 17 C 1.47025 * 108.70254 * 335.81726 * 6 5 3 18 18 C 1.54329 * 107.26895 * 1.05792 * 17 6 5 19 19 H 1.09004 * 110.71729 * 263.65064 * 18 17 6 20 20 N 1.46505 * 110.71713 * 140.56072 * 18 17 6 21 21 C 1.34941 * 126.03516 * 326.45063 * 20 18 17 22 22 C 1.35318 * 107.74260 * 179.97438 * 21 20 18 23 23 C 1.39866 * 107.92131 * 359.97438 * 22 21 20 24 24 N 1.30835 * 108.20221 * 359.74571 * 23 22 21 25 25 H 1.09008 * 109.47060 * 300.00090 * 1 2 3 26 26 H 1.08997 * 109.47171 * 60.00049 * 1 2 3 27 27 H 1.09000 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09000 * 110.36392 * 36.23766 * 5 3 2 29 29 H 1.09002 * 110.36373 * 274.02890 * 5 3 2 30 30 H 0.96997 * 120.00051 * 180.02562 * 12 11 9 31 31 H 1.08992 * 109.88252 * 120.47414 * 17 6 5 32 32 H 1.08998 * 109.87725 * 241.48898 * 17 6 5 33 33 H 1.07996 * 126.13308 * 359.97438 * 21 20 18 34 34 H 1.08006 * 126.03918 * 180.02562 * 22 21 20 35 35 H 1.07999 * 125.89604 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0103 -0.5463 5 6 2.2697 1.7978 1.4457 6 7 3.3602 2.7820 1.3218 7 6 3.6159 3.7841 2.1860 8 8 4.5476 4.5400 1.9827 9 6 2.7729 3.9631 3.3691 10 1 1.8898 3.3552 3.5000 11 6 3.1114 4.9227 4.3314 12 7 4.1084 5.7397 4.1169 13 14 2.1377 5.0346 5.9216 14 1 2.8232 4.2481 6.9783 15 1 2.0425 6.4548 6.3448 16 1 0.7730 4.4900 5.7058 17 6 4.1230 2.4891 0.0994 18 6 3.4523 1.2763 -0.5796 19 1 3.9614 0.3517 -0.3075 20 7 3.4293 1.4443 -2.0348 21 6 3.2983 2.6126 -2.6971 22 6 3.3249 2.3406 -4.0224 23 6 3.4780 0.9588 -4.1751 24 7 3.5465 0.4211 -2.9844 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.5788 0.9667 2.0796 29 1 1.3756 2.2713 1.8513 30 1 4.3430 6.4040 4.7835 31 1 4.0967 3.3496 -0.5690 32 1 5.1552 2.2498 0.3551 33 1 3.1913 3.5897 -2.2497 34 1 3.2432 3.0631 -4.8211 35 1 3.5340 0.4279 -5.1139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:50 Heat of formation + Delta-G solvation = -10.747389 kcal Electronic energy + Delta-G solvation = -20230.756785 eV Core-core repulsion = 17037.358199 eV Total energy + Delta-G solvation = -3193.398586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29059 -40.49944 -38.83650 -37.07495 -34.70479 -33.94315 -31.11892 -30.40402 -29.72710 -28.02191 -27.37749 -24.71002 -23.12558 -22.07740 -21.56271 -20.77958 -18.97939 -18.59661 -17.90690 -17.23373 -16.66924 -16.19853 -16.04190 -15.83779 -15.42481 -15.29662 -15.11112 -14.39640 -14.26012 -14.15855 -13.55027 -13.49552 -13.22130 -13.09989 -12.98910 -12.72607 -12.59386 -12.44439 -12.02491 -11.98729 -11.65709 -10.97745 -10.94466 -10.39752 -9.97370 -9.54379 -9.32313 -8.36558 -6.91227 0.90306 1.31841 1.40060 1.41351 1.57032 1.96204 2.16440 2.32224 2.40356 2.83086 3.19955 3.36058 3.48833 3.70023 3.85910 3.88156 4.04161 4.13427 4.43979 4.48467 4.50389 4.62055 4.68707 4.70259 4.78975 4.81761 4.86930 5.14795 5.29224 5.35941 5.76382 5.90173 6.01316 6.04077 6.24362 6.76493 6.81369 7.28017 8.33753 8.59360 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.026236 B = 0.005378 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.977290 B = 5205.494946 C = 6001.710216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.383 6.383 3 C 0.085 3.915 4 H 0.084 0.916 5 C 0.101 3.899 6 N -0.644 5.644 7 C 0.557 3.443 8 O -0.625 6.625 9 C -0.561 4.561 10 H 0.091 0.909 11 C 0.031 3.969 12 N -0.818 5.818 13 Si 0.997 3.003 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.246 1.246 17 C 0.115 3.885 18 C 0.166 3.834 19 H 0.121 0.879 20 N -0.370 5.370 21 C 0.038 3.962 22 C -0.270 4.270 23 C 0.044 3.956 24 N -0.324 5.324 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.277 0.723 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.445 -8.969 -10.251 16.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C 0.024 3.976 4 H 0.102 0.898 5 C -0.023 4.023 6 N -0.384 5.384 7 C 0.364 3.636 8 O -0.511 6.511 9 C -0.597 4.597 10 H 0.109 0.891 11 C -0.185 4.185 12 N -0.448 5.448 13 Si 0.816 3.184 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.169 1.169 17 C -0.010 4.010 18 C 0.063 3.937 19 H 0.139 0.861 20 N -0.153 5.153 21 C -0.107 4.107 22 C -0.299 4.299 23 C -0.142 4.142 24 N -0.145 5.145 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.194 0.806 34 H 0.191 0.809 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.576 -9.633 -9.470 15.487 hybrid contribution -0.194 1.290 0.233 1.326 sum -7.770 -8.342 -9.236 14.672 Atomic orbital electron populations 1.23044 0.78794 1.04412 1.00870 1.87895 1.22052 1.25348 1.94797 1.23519 0.93129 0.85910 0.95001 0.89842 1.22475 0.91619 0.92083 0.96128 1.48347 1.32798 1.32590 1.24669 1.18442 0.84673 0.77905 0.82550 1.90581 1.35799 1.47616 1.77132 1.21357 1.11727 1.21893 1.04734 0.89073 1.26976 0.95433 0.92729 1.03313 1.70169 1.25373 1.14379 1.34831 0.85010 0.79213 0.78395 0.75770 1.18870 1.19676 1.16862 1.21758 0.95767 0.95404 0.88096 1.22100 0.96696 0.99958 0.74971 0.86095 1.48571 1.56496 1.04962 1.05224 1.22921 1.01516 0.92213 0.94018 1.21841 1.15674 0.96890 0.95531 1.24532 0.98468 0.94445 0.96788 1.77367 1.25221 1.13465 0.98440 0.92704 0.93631 0.87426 0.91168 0.89875 0.91329 0.91993 0.92461 0.80606 0.80881 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.89 113.37 1.23 1.73 16 2 O -0.38 -10.78 10.52 -148.98 -1.57 -12.35 16 3 C 0.08 2.55 3.19 32.09 0.10 2.65 16 4 H 0.08 2.44 7.90 -2.39 -0.02 2.42 16 5 C 0.10 3.57 6.29 86.86 0.55 4.11 16 6 N -0.64 -28.79 3.33 -816.88 -2.72 -31.51 16 7 C 0.56 31.70 7.77 86.36 0.67 32.37 16 8 O -0.62 -41.28 15.37 -4.31 -0.07 -41.35 16 9 C -0.56 -30.70 8.99 24.83 0.22 -30.48 16 10 H 0.09 4.45 6.60 -2.91 -0.02 4.43 16 11 C 0.03 1.69 5.49 85.31 0.47 2.16 16 12 N -0.82 -48.82 11.85 21.84 0.26 -48.56 16 13 Si 1.00 39.40 29.56 68.60 2.03 41.43 16 14 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 15 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 16 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 17 C 0.11 4.42 6.49 86.73 0.56 4.98 16 18 C 0.17 5.32 3.81 46.28 0.18 5.49 16 19 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 20 N -0.37 -11.31 3.63 -321.37 -1.17 -12.48 16 21 C 0.04 1.05 10.42 83.54 0.87 1.92 16 22 C -0.27 -6.13 10.80 21.99 0.24 -5.89 16 23 C 0.04 1.01 12.03 85.24 1.02 2.04 16 24 N -0.32 -9.79 12.58 -57.03 -0.72 -10.51 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 27 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.86 7.07 -2.39 -0.02 2.84 16 30 H 0.28 14.91 8.29 -92.71 -0.77 14.14 16 31 H 0.06 2.40 6.01 -2.39 -0.01 2.39 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 33 H 0.18 4.53 7.01 -2.91 -0.02 4.51 16 34 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 35 H 0.22 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.90 302.15 3.27 -72.63 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.10 Total: 21.61 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 6.12 Total: 21.09 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.34 Total: -103.05 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.63 Total: -53.70 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -75.90 3.27 -72.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.880 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds