Wall clock time and date at job start Mon Mar 30 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 114.00030 * 2 1 4 4 H 1.08999 * 110.88397 * 32.42120 * 3 2 1 5 5 C 1.54914 * 111.00262 * 268.54758 * 3 2 1 6 6 N 1.47427 * 104.82766 * 204.87379 * 5 3 2 7 7 C 1.34777 * 125.64418 * 204.08686 * 6 5 3 8 8 O 1.21686 * 119.99487 * 180.02562 * 7 6 5 9 9 C 1.46373 * 120.00175 * 0.03093 * 7 6 5 10 10 H 1.08001 * 119.99842 * 6.22976 * 9 7 6 11 11 C 1.40048 * 119.99666 * 186.23306 * 9 7 6 12 12 N 1.30672 * 119.99569 * 184.65043 * 11 9 7 13 13 Si 1.86795 * 120.00451 * 4.64823 * 11 9 7 14 14 H 1.48495 * 109.47114 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47184 * 300.00357 * 13 11 9 16 16 H 1.48503 * 109.46939 * 60.00264 * 13 11 9 17 17 C 1.47024 * 108.70214 * 24.35947 * 6 5 3 18 18 C 1.54335 * 107.26601 * 358.57935 * 17 6 5 19 19 H 1.09008 * 110.99903 * 219.60454 * 18 17 6 20 20 N 1.46495 * 110.51413 * 96.45766 * 18 17 6 21 21 C 1.34951 * 126.03685 * 331.21384 * 20 18 17 22 22 C 1.35319 * 107.74427 * 179.84206 * 21 20 18 23 23 C 1.39866 * 107.92044 * 0.41820 * 22 21 20 24 24 N 1.30837 * 108.20284 * 359.74336 * 23 22 21 25 25 H 1.08999 * 109.46597 * 60.00211 * 1 2 3 26 26 H 1.09000 * 109.46611 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46925 * 299.99889 * 1 2 3 28 28 H 1.09001 * 110.36710 * 86.03503 * 5 3 2 29 29 H 1.08993 * 110.45818 * 323.76146 * 5 3 2 30 30 H 0.97000 * 120.00205 * 354.89239 * 12 11 9 31 31 H 1.08996 * 109.88494 * 118.13161 * 17 6 5 32 32 H 1.09000 * 109.87524 * 239.28983 * 17 6 5 33 33 H 1.07996 * 126.12531 * 359.97438 * 21 20 18 34 34 H 1.08004 * 126.03977 * 180.16033 * 22 21 20 35 35 H 1.08004 * 125.89926 * 179.71819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 2.2696 1.7978 -1.4458 6 7 3.3605 2.7815 -1.3194 7 6 3.6184 3.7836 -2.1830 8 8 4.5500 4.5390 -1.9777 9 6 2.7778 3.9633 -3.3678 10 1 1.8926 3.3585 -3.4986 11 6 3.1215 4.9194 -4.3316 12 7 2.3245 5.1437 -5.3425 13 14 4.7191 5.8742 -4.1721 14 1 4.8474 6.8181 -5.3112 15 1 4.7157 6.6353 -2.8970 16 1 5.8639 4.9283 -4.1810 17 6 4.1243 2.4842 -0.0988 18 6 3.4484 1.2749 0.5814 19 1 3.4292 1.3963 1.6645 20 7 4.1300 0.0316 0.2131 21 6 4.7928 -0.1991 -0.9397 22 6 5.2794 -1.4607 -0.8902 23 6 4.8930 -2.0236 0.3305 24 7 4.2039 -1.1299 0.9926 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3759 2.2724 -1.8510 29 1 2.5788 0.9679 -2.0811 30 1 1.5324 4.5976 -5.4661 31 1 5.1545 2.2390 -0.3567 32 1 4.1022 3.3440 0.5708 33 1 4.9148 0.4991 -1.7546 34 1 5.8598 -1.9485 -1.6595 35 1 5.1232 -3.0233 0.6680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:54 Heat of formation + Delta-G solvation = 1.029373 kcal Electronic energy + Delta-G solvation = -20646.250000 eV Core-core repulsion = 17453.362093 eV Total energy + Delta-G solvation = -3192.887908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15051 -39.16806 -37.57999 -35.82268 -33.02608 -32.43528 -29.91895 -29.11411 -28.47001 -26.51100 -26.09098 -23.21150 -22.04912 -20.72119 -19.96892 -19.39312 -17.91026 -17.38550 -16.44367 -16.06016 -15.21472 -14.97488 -14.58526 -14.35839 -14.20916 -14.08828 -13.58182 -13.18240 -12.90869 -12.51693 -12.49524 -12.37152 -12.04940 -11.83801 -11.74006 -11.39175 -11.05266 -10.49388 -10.47737 -10.30556 -9.79751 -9.29277 -9.12460 -9.07798 -8.34991 -8.10200 -7.87570 -7.12466 -5.06819 2.13464 2.59573 3.08567 3.42506 3.47472 3.62225 3.90788 4.14287 4.18236 4.37363 4.46034 4.51704 4.94482 5.00770 5.01952 5.18550 5.22112 5.31532 5.33528 5.35512 5.59442 5.75134 5.80347 5.85953 6.00320 6.01524 6.08470 6.24773 6.68481 6.86119 7.03909 7.26823 7.46313 7.62571 7.94239 7.98557 8.69804 8.78262 9.83298 10.21164 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023697 B = 0.006318 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.307327 B = 4430.721967 C = 4996.686352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.061 3.939 4 H 0.091 0.909 5 C 0.098 3.902 6 N -0.635 5.635 7 C 0.568 3.432 8 O -0.610 6.610 9 C -0.589 4.589 10 H 0.073 0.927 11 C 0.061 3.939 12 N -0.827 5.827 13 Si 1.127 2.873 14 H -0.319 1.319 15 H -0.280 1.280 16 H -0.290 1.290 17 C 0.106 3.894 18 C 0.154 3.846 19 H 0.118 0.882 20 N -0.347 5.347 21 C 0.069 3.931 22 C -0.283 4.283 23 C 0.038 3.962 24 N -0.290 5.290 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.278 0.722 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.256 -10.968 9.718 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.000 4.000 4 H 0.109 0.891 5 C -0.027 4.027 6 N -0.373 5.373 7 C 0.380 3.620 8 O -0.502 6.502 9 C -0.625 4.625 10 H 0.091 0.909 11 C -0.157 4.157 12 N -0.454 5.454 13 Si 0.959 3.041 14 H -0.251 1.251 15 H -0.207 1.207 16 H -0.217 1.217 17 C -0.019 4.019 18 C 0.051 3.949 19 H 0.136 0.864 20 N -0.129 5.129 21 C -0.077 4.077 22 C -0.312 4.312 23 C -0.149 4.149 24 N -0.111 5.111 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.187 0.813 34 H 0.161 0.839 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.585 -9.165 10.191 13.718 hybrid contribution -1.063 -1.506 -0.140 1.849 sum -1.647 -10.671 10.051 14.752 Atomic orbital electron populations 1.22816 0.80951 1.02741 1.00139 1.88018 1.19609 1.25437 1.94789 1.23782 0.93353 0.85880 0.96942 0.89072 1.22430 0.92415 0.92584 0.95280 1.48209 1.31803 1.32424 1.24853 1.18270 0.84248 0.77337 0.82160 1.90191 1.36453 1.47005 1.76566 1.22044 1.11348 1.24019 1.05121 0.90916 1.27181 1.03415 0.94566 0.90519 1.70656 1.12000 1.34710 1.28015 0.82434 0.72436 0.75534 0.73692 1.25083 1.20684 1.21701 1.21991 0.96537 0.94443 0.88954 1.22408 0.90624 0.80868 1.01020 0.86374 1.48338 1.40662 1.10766 1.13100 1.22572 0.95702 0.98291 0.91175 1.21414 1.12873 0.95760 1.01150 1.23757 0.97744 0.99243 0.94119 1.77279 1.22018 0.92553 1.19210 0.93730 0.89622 0.93997 0.90298 0.91792 0.91081 0.90913 0.90025 0.81275 0.83943 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.89 101.05 1.10 1.43 16 2 O -0.36 -5.31 9.99 -35.23 -0.35 -5.66 16 3 C 0.06 0.87 3.35 -24.59 -0.08 0.79 16 4 H 0.09 1.16 7.90 -51.93 -0.41 0.75 16 5 C 0.10 1.70 5.88 -2.53 -0.01 1.68 16 6 N -0.63 -12.88 3.33 -172.17 -0.57 -13.45 16 7 C 0.57 14.49 7.60 -12.99 -0.10 14.40 16 8 O -0.61 -16.94 12.40 5.20 0.06 -16.87 16 9 C -0.59 -15.95 9.42 -35.63 -0.34 -16.28 16 10 H 0.07 1.94 6.80 -52.49 -0.36 1.58 16 11 C 0.06 1.71 5.52 -17.37 -0.10 1.62 16 12 N -0.83 -23.14 13.64 55.55 0.76 -22.38 16 13 Si 1.13 29.00 25.99 -169.99 -4.42 24.59 16 14 H -0.32 -7.93 7.11 56.52 0.40 -7.53 16 15 H -0.28 -7.42 6.78 56.52 0.38 -7.04 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 17 C 0.11 1.77 5.89 -3.06 -0.02 1.75 16 18 C 0.15 2.25 4.07 -66.10 -0.27 1.98 16 19 H 0.12 1.49 8.14 -51.92 -0.42 1.07 16 20 N -0.35 -5.46 3.12 -53.08 -0.17 -5.62 16 21 C 0.07 1.08 9.24 -17.22 -0.16 0.92 16 22 C -0.28 -3.97 10.80 -40.01 -0.43 -4.40 16 23 C 0.04 0.52 12.03 -17.37 -0.21 0.31 16 24 N -0.29 -4.62 12.58 30.62 0.39 -4.23 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 28 H 0.08 1.42 7.07 -51.93 -0.37 1.05 16 29 H 0.06 1.16 7.59 -51.93 -0.39 0.77 16 30 H 0.28 7.47 8.72 -40.82 -0.36 7.12 16 31 H 0.07 1.27 7.14 -51.93 -0.37 0.90 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.17 2.74 7.65 -52.49 -0.40 2.34 16 34 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -32.22 296.41 -4.88 -37.09 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.43 Total: -2.13 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.61 Total: 4.20 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.40 Total: -45.69 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.29 Total: -22.53 kcal Atomic # 14 Polarization: 29.00 SS G_CDS: -4.42 Total: 24.59 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.22 -4.88 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.123 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds