Wall clock time and date at job start Mon Mar 30 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 114.00030 * 2 1 4 4 H 1.08999 * 110.88397 * 32.42120 * 3 2 1 5 5 C 1.54914 * 111.00262 * 268.54758 * 3 2 1 6 6 N 1.47427 * 104.82766 * 204.87379 * 5 3 2 7 7 C 1.34777 * 125.64418 * 204.08686 * 6 5 3 8 8 O 1.21686 * 119.99487 * 180.02562 * 7 6 5 9 9 C 1.46373 * 120.00175 * 0.03093 * 7 6 5 10 10 H 1.08001 * 119.99842 * 6.22976 * 9 7 6 11 11 C 1.40048 * 119.99666 * 186.23306 * 9 7 6 12 12 N 1.30672 * 119.99569 * 184.65043 * 11 9 7 13 13 Si 1.86795 * 120.00451 * 4.64823 * 11 9 7 14 14 H 1.48495 * 109.47114 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47184 * 300.00357 * 13 11 9 16 16 H 1.48503 * 109.46939 * 60.00264 * 13 11 9 17 17 C 1.47024 * 108.70214 * 24.35947 * 6 5 3 18 18 C 1.54335 * 107.26601 * 358.57935 * 17 6 5 19 19 H 1.09008 * 110.99903 * 219.60454 * 18 17 6 20 20 N 1.46495 * 110.51413 * 96.45766 * 18 17 6 21 21 C 1.34951 * 126.03685 * 331.21384 * 20 18 17 22 22 C 1.35319 * 107.74427 * 179.84206 * 21 20 18 23 23 C 1.39866 * 107.92044 * 0.41820 * 22 21 20 24 24 N 1.30837 * 108.20284 * 359.74336 * 23 22 21 25 25 H 1.08999 * 109.46597 * 60.00211 * 1 2 3 26 26 H 1.09000 * 109.46611 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46925 * 299.99889 * 1 2 3 28 28 H 1.09001 * 110.36710 * 86.03503 * 5 3 2 29 29 H 1.08993 * 110.45818 * 323.76146 * 5 3 2 30 30 H 0.97000 * 120.00205 * 354.89239 * 12 11 9 31 31 H 1.08996 * 109.88494 * 118.13161 * 17 6 5 32 32 H 1.09000 * 109.87524 * 239.28983 * 17 6 5 33 33 H 1.07996 * 126.12531 * 359.97438 * 21 20 18 34 34 H 1.08004 * 126.03977 * 180.16033 * 22 21 20 35 35 H 1.08004 * 125.89926 * 179.71819 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 2.2696 1.7978 -1.4458 6 7 3.3605 2.7815 -1.3194 7 6 3.6184 3.7836 -2.1830 8 8 4.5500 4.5390 -1.9777 9 6 2.7778 3.9633 -3.3678 10 1 1.8926 3.3585 -3.4986 11 6 3.1215 4.9194 -4.3316 12 7 2.3245 5.1437 -5.3425 13 14 4.7191 5.8742 -4.1721 14 1 4.8474 6.8181 -5.3112 15 1 4.7157 6.6353 -2.8970 16 1 5.8639 4.9283 -4.1810 17 6 4.1243 2.4842 -0.0988 18 6 3.4484 1.2749 0.5814 19 1 3.4292 1.3963 1.6645 20 7 4.1300 0.0316 0.2131 21 6 4.7928 -0.1991 -0.9397 22 6 5.2794 -1.4607 -0.8902 23 6 4.8930 -2.0236 0.3305 24 7 4.2039 -1.1299 0.9926 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.3759 2.2724 -1.8510 29 1 2.5788 0.9679 -2.0811 30 1 1.5324 4.5976 -5.4661 31 1 5.1545 2.2390 -0.3567 32 1 4.1022 3.3440 0.5708 33 1 4.9148 0.4991 -1.7546 34 1 5.8598 -1.9485 -1.6595 35 1 5.1232 -3.0233 0.6680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:53 Heat of formation + Delta-G solvation = -22.025126 kcal Electronic energy + Delta-G solvation = -20647.249718 eV Core-core repulsion = 17453.362093 eV Total energy + Delta-G solvation = -3193.887626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32452 -40.60290 -39.13675 -37.29222 -35.15427 -33.82417 -31.07820 -30.42223 -29.88206 -28.05633 -27.42473 -24.69868 -23.25787 -21.88769 -21.51801 -20.85572 -19.68236 -18.74393 -17.98768 -17.26138 -16.86391 -16.14010 -16.05377 -15.86108 -15.64568 -15.31153 -15.19776 -14.64093 -14.39245 -14.22872 -13.97775 -13.73016 -13.44635 -13.28450 -12.87036 -12.58559 -12.52512 -12.38825 -12.17210 -11.61200 -11.36105 -11.22353 -10.89148 -10.29403 -10.15289 -9.58814 -9.47215 -9.26450 -7.19466 0.97307 1.39139 1.46074 1.52987 1.89981 2.00951 2.12954 2.17439 2.43075 2.68569 3.13714 3.19762 3.29673 3.81975 3.87709 3.88742 3.98765 4.18876 4.37697 4.45863 4.47152 4.57563 4.62427 4.66656 4.71897 4.78628 4.89876 5.04324 5.18743 5.46588 5.59086 5.82224 5.93949 5.96506 6.14437 6.58454 6.82378 6.88372 7.82484 8.06846 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023697 B = 0.006318 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.307327 B = 4430.721967 C = 4996.686352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.075 3.925 4 H 0.115 0.885 5 C 0.099 3.901 6 N -0.634 5.634 7 C 0.568 3.432 8 O -0.635 6.635 9 C -0.605 4.605 10 H 0.068 0.932 11 C 0.032 3.968 12 N -0.843 5.843 13 Si 1.158 2.842 14 H -0.306 1.306 15 H -0.293 1.293 16 H -0.295 1.295 17 C 0.107 3.893 18 C 0.161 3.839 19 H 0.145 0.855 20 N -0.355 5.355 21 C 0.047 3.953 22 C -0.279 4.279 23 C 0.041 3.959 24 N -0.310 5.310 25 H 0.043 0.957 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.278 0.722 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -12.370 11.294 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.015 3.985 4 H 0.133 0.867 5 C -0.026 4.026 6 N -0.369 5.369 7 C 0.377 3.623 8 O -0.529 6.529 9 C -0.641 4.641 10 H 0.086 0.914 11 C -0.183 4.183 12 N -0.471 5.471 13 Si 0.989 3.011 14 H -0.236 1.236 15 H -0.221 1.221 16 H -0.222 1.222 17 C -0.017 4.017 18 C 0.058 3.942 19 H 0.163 0.837 20 N -0.137 5.137 21 C -0.099 4.099 22 C -0.309 4.309 23 C -0.144 4.144 24 N -0.131 5.131 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.710 -10.601 11.774 15.859 hybrid contribution -1.052 -1.210 -0.588 1.708 sum -1.761 -11.811 11.186 16.362 Atomic orbital electron populations 1.23030 0.79130 1.04015 1.01032 1.88003 1.21629 1.25226 1.94695 1.23655 0.93883 0.86518 0.94492 0.86706 1.22496 0.90954 0.91344 0.97769 1.47910 1.32632 1.31294 1.25073 1.18054 0.83570 0.78072 0.82594 1.90163 1.37154 1.48286 1.77328 1.22173 1.11775 1.24145 1.06048 0.91369 1.27781 1.04521 0.95328 0.90704 1.70662 1.12461 1.35378 1.28594 0.82009 0.70861 0.74929 0.73331 1.23612 1.22075 1.22234 1.22116 0.95879 0.96143 0.87605 1.22418 0.90082 0.79674 1.02065 0.83712 1.48412 1.41098 1.11097 1.13069 1.22584 0.97005 0.99027 0.91310 1.21741 1.12206 0.95111 1.01808 1.24368 0.96335 1.00247 0.93494 1.77247 1.23055 0.92951 1.19856 0.93833 0.88262 0.92072 0.91171 0.92884 0.91084 0.91761 0.88847 0.82697 0.81937 0.77038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.89 113.37 1.23 1.70 16 2 O -0.38 -10.24 9.99 -148.98 -1.49 -11.73 16 3 C 0.07 2.00 3.35 31.98 0.11 2.11 16 4 H 0.12 2.55 7.90 -2.39 -0.02 2.54 16 5 C 0.10 3.37 5.88 86.86 0.51 3.89 16 6 N -0.63 -25.48 3.33 -816.84 -2.72 -28.20 16 7 C 0.57 29.10 7.60 86.36 0.66 29.76 16 8 O -0.63 -35.36 12.40 -4.30 -0.05 -35.41 16 9 C -0.61 -33.14 9.42 24.83 0.23 -32.91 16 10 H 0.07 3.70 6.80 -2.91 -0.02 3.68 16 11 C 0.03 1.79 5.52 85.30 0.47 2.26 16 12 N -0.84 -47.47 13.64 21.84 0.30 -47.18 16 13 Si 1.16 59.24 25.99 68.60 1.78 61.03 16 14 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 15 H -0.29 -15.51 6.78 99.48 0.67 -14.84 16 16 H -0.29 -15.15 7.11 99.48 0.71 -14.45 16 17 C 0.11 3.45 5.89 86.73 0.51 3.96 16 18 C 0.16 4.35 4.07 46.18 0.19 4.53 16 19 H 0.15 3.19 8.14 -2.38 -0.02 3.17 16 20 N -0.35 -10.54 3.12 -321.86 -1.01 -11.55 16 21 C 0.05 1.42 9.24 83.54 0.77 2.20 16 22 C -0.28 -7.28 10.80 21.99 0.24 -7.04 16 23 C 0.04 1.02 12.03 85.24 1.02 2.05 16 24 N -0.31 -9.12 12.58 -57.02 -0.72 -9.84 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 0.97 8.11 -2.39 -0.02 0.96 16 28 H 0.07 2.52 7.07 -2.39 -0.02 2.50 16 29 H 0.05 1.94 7.59 -2.39 -0.02 1.92 16 30 H 0.28 15.13 8.72 -92.71 -0.81 14.32 16 31 H 0.06 2.22 7.14 -2.39 -0.02 2.20 16 32 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.16 5.09 7.65 -2.91 -0.02 5.07 16 34 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.21 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -68.28 296.41 3.07 -65.21 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.02 Total: 5.16 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.95 Total: 12.50 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -4.14 Total: -96.76 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.54 Total: -47.14 kcal Atomic # 14 Polarization: 59.24 SS G_CDS: 1.78 Total: 61.03 kcal Total: -68.28 3.07 -65.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.185 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds