Wall clock time and date at job start Mon Mar 30 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99895 * 2 1 4 4 C 1.38534 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.39680 * 120.49307 * 5.00319 * 4 2 1 6 6 C 1.38095 * 118.47237 * 179.72396 * 5 4 2 7 7 N 1.32525 * 119.27771 * 0.25194 * 6 5 4 8 8 C 1.32388 * 120.94232 * 0.02562 * 7 6 5 9 9 N 1.38887 * 119.16322 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00292 * 359.97438 * 9 8 7 11 11 O 1.21573 * 119.99796 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00521 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00296 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47298 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99584 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00074 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99953 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47002 * 89.99475 * 18 16 14 20 20 H 1.48498 * 109.46769 * 209.99653 * 18 16 14 21 21 H 1.48505 * 109.47027 * 329.99356 * 18 16 14 22 22 N 1.32391 * 121.66847 * 359.97159 * 8 7 6 23 23 H 1.09005 * 109.47396 * 239.99893 * 1 2 3 24 24 H 1.08994 * 109.47086 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47003 * 119.99864 * 1 2 3 26 26 H 1.08997 * 109.47188 * 269.99618 * 3 2 1 27 27 H 1.08999 * 109.47354 * 30.00128 * 3 2 1 28 28 H 1.09010 * 109.46654 * 149.99792 * 3 2 1 29 29 H 1.08002 * 120.76764 * 0.02562 * 5 4 2 30 30 H 1.07993 * 120.36106 * 180.23055 * 6 5 4 31 31 H 0.97005 * 120.00100 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99358 * 0.02562 * 12 10 9 33 33 H 1.09006 * 109.46872 * 300.00058 * 13 12 10 34 34 H 1.08999 * 109.47086 * 59.99841 * 13 12 10 35 35 H 0.97003 * 120.00210 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1998 0.0005 5 6 1.4736 -2.4131 -0.1039 6 6 2.2060 -3.5838 -0.1049 7 7 3.5259 -3.5227 -0.0025 8 6 4.1474 -2.3583 0.1007 9 7 5.5320 -2.3373 0.2066 10 6 6.2258 -3.4928 0.2039 11 8 5.6395 -4.5535 0.1083 12 7 7.5694 -3.4725 0.3072 13 6 8.3235 -4.7284 0.3036 14 6 9.7954 -4.4310 0.4295 15 1 10.1352 -3.4086 0.5041 16 6 10.7083 -5.4641 0.4492 17 7 11.9929 -5.2045 0.5585 18 14 10.1205 -7.2325 0.3193 19 1 10.0709 -7.6338 -1.1095 20 1 11.0590 -8.1209 1.0508 21 1 8.7645 -7.3483 0.9135 22 7 3.4824 -1.2135 0.1056 23 1 -0.3634 -0.5139 0.8900 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3792 1.5834 -1.0276 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.3970 -2.4351 -0.1869 30 1 1.7086 -4.5388 -0.1880 31 1 5.9999 -1.4909 0.2825 32 1 8.0371 -2.6261 0.3838 33 1 8.0042 -5.3463 1.1430 34 1 8.1391 -5.2603 -0.6298 35 1 12.6352 -5.9312 0.5721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432353356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:02 Heat of formation + Delta-G solvation = 56.952549 kcal Electronic energy + Delta-G solvation = -19259.854942 eV Core-core repulsion = 16101.684796 eV Total energy + Delta-G solvation = -3158.170146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07155 -39.31609 -37.20755 -34.72889 -34.15524 -32.86906 -32.32962 -30.53939 -28.54216 -27.69058 -26.07268 -23.73400 -22.80662 -21.64778 -20.22947 -18.70417 -18.14423 -17.05308 -16.31847 -16.19283 -15.86937 -15.13129 -15.05189 -14.77266 -14.56199 -14.06144 -13.95337 -13.63398 -13.13166 -12.96917 -12.65317 -12.39173 -12.30023 -12.28358 -11.10475 -10.98267 -10.82635 -10.80182 -10.61331 -9.93568 -9.60752 -9.45003 -8.87014 -8.75095 -8.72491 -8.16195 -7.91787 -6.18957 -4.21230 1.20593 1.50896 2.36355 2.89354 3.30791 3.37563 3.46730 3.62917 4.22914 4.33647 4.36513 4.48684 4.62030 4.85851 4.96587 5.07510 5.16058 5.16769 5.22775 5.30904 5.34782 5.56681 5.61013 6.09710 6.35965 6.59599 6.74295 7.06956 7.11412 7.14465 7.28717 7.42788 7.44258 8.20044 8.43944 8.68813 8.81420 9.13728 9.41322 10.92899 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.047344 B = 0.003603 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.270719 B = 7769.163022 C = 8333.502430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.610 5.610 3 C 0.096 3.904 4 C 0.461 3.539 5 C -0.333 4.333 6 C 0.203 3.797 7 N -0.533 5.533 8 C 0.601 3.399 9 N -0.651 5.651 10 C 0.687 3.313 11 O -0.533 6.533 12 N -0.715 5.715 13 C 0.239 3.761 14 C -0.543 4.543 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.893 5.893 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.259 1.259 22 N -0.612 5.612 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.166 0.834 31 H 0.415 0.585 32 H 0.394 0.606 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 12.187 -1.064 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.325 5.325 3 C -0.047 4.047 4 C 0.218 3.782 5 C -0.363 4.363 6 C 0.038 3.962 7 N -0.257 5.257 8 C 0.243 3.757 9 N -0.302 5.302 10 C 0.386 3.614 11 O -0.404 6.404 12 N -0.369 5.369 13 C 0.117 3.883 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.183 1.183 22 N -0.344 5.344 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.183 0.817 31 H 0.251 0.749 32 H 0.227 0.773 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.526 11.190 -1.052 25.175 hybrid contribution -0.587 0.109 -0.079 0.602 sum -23.113 11.299 -1.131 25.752 Atomic orbital electron populations 1.21693 0.78004 1.02967 1.01797 1.46148 1.05298 1.03042 1.78018 1.21650 0.97925 0.83635 1.01492 1.17986 0.87058 0.86178 0.87006 1.21943 1.02000 0.92837 1.19502 1.22899 0.88560 0.97958 0.86793 1.68649 1.10025 1.25845 1.21163 1.18703 0.85491 0.83989 0.87511 1.42469 1.02511 1.10688 1.74553 1.16059 0.82685 0.83107 0.79575 1.91010 1.68092 1.27708 1.53590 1.45438 1.02972 1.12092 1.76366 1.19431 0.90920 0.81042 0.96932 1.21074 0.88270 0.95922 1.52844 0.90205 1.24769 0.94599 0.99334 0.93870 1.69879 1.00976 1.32920 1.49251 0.86816 0.79568 0.84315 0.79019 1.19813 1.20949 1.18307 1.67038 1.07910 1.30151 1.29318 0.92226 0.90255 0.92197 0.93266 0.91737 0.90008 0.84456 0.81696 0.74867 0.77285 0.95584 0.96047 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 9.44 59.85 0.57 1.11 16 2 N -0.61 -5.72 3.38 -189.49 -0.64 -6.36 16 3 C 0.10 0.75 10.48 59.85 0.63 1.38 16 4 C 0.46 5.86 7.39 -154.84 -1.14 4.71 16 5 C -0.33 -3.82 9.40 -39.10 -0.37 -4.18 16 6 C 0.20 2.77 11.28 -17.31 -0.20 2.57 16 7 N -0.53 -9.74 7.86 -13.93 -0.11 -9.85 16 8 C 0.60 10.41 8.38 -322.37 -2.70 7.71 16 9 N -0.65 -11.01 5.40 -17.50 -0.09 -11.11 16 10 C 0.69 14.31 8.53 -86.92 -0.74 13.57 16 11 O -0.53 -13.09 14.54 5.30 0.08 -13.02 16 12 N -0.72 -14.92 5.55 -66.42 -0.37 -15.29 16 13 C 0.24 5.96 4.50 -5.20 -0.02 5.94 16 14 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 15 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 18 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 N -0.61 -9.14 9.24 -13.07 -0.12 -9.26 16 23 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 24 H 0.08 0.27 7.79 -51.93 -0.40 -0.13 16 25 H 0.06 0.30 7.78 -51.93 -0.40 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 28 H 0.08 0.77 7.33 -51.92 -0.38 0.39 16 29 H 0.14 1.11 6.85 -52.49 -0.36 0.75 16 30 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.41 5.58 8.83 -40.82 -0.36 5.22 16 32 H 0.39 7.10 8.34 -40.82 -0.34 6.76 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -35.59 302.94 -9.28 -44.86 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.27 Total: 4.74 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: -4.42 Total: 19.62 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -0.56 Total: -77.71 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.59 -9.28 -44.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432353356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.817 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds