Wall clock time and date at job start Mon Mar 30 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99895 * 2 1 4 4 C 1.38534 * 119.99760 * 179.97438 * 2 1 3 5 5 C 1.39680 * 120.49307 * 5.00319 * 4 2 1 6 6 C 1.38095 * 118.47237 * 179.72396 * 5 4 2 7 7 N 1.32525 * 119.27771 * 0.25194 * 6 5 4 8 8 C 1.32388 * 120.94232 * 0.02562 * 7 6 5 9 9 N 1.38887 * 119.16322 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00292 * 359.97438 * 9 8 7 11 11 O 1.21573 * 119.99796 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00521 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00296 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47298 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99584 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00074 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99953 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47002 * 89.99475 * 18 16 14 20 20 H 1.48498 * 109.46769 * 209.99653 * 18 16 14 21 21 H 1.48505 * 109.47027 * 329.99356 * 18 16 14 22 22 N 1.32391 * 121.66847 * 359.97159 * 8 7 6 23 23 H 1.09005 * 109.47396 * 239.99893 * 1 2 3 24 24 H 1.08994 * 109.47086 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47003 * 119.99864 * 1 2 3 26 26 H 1.08997 * 109.47188 * 269.99618 * 3 2 1 27 27 H 1.08999 * 109.47354 * 30.00128 * 3 2 1 28 28 H 1.09010 * 109.46654 * 149.99792 * 3 2 1 29 29 H 1.08002 * 120.76764 * 0.02562 * 5 4 2 30 30 H 1.07993 * 120.36106 * 180.23055 * 6 5 4 31 31 H 0.97005 * 120.00100 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99358 * 0.02562 * 12 10 9 33 33 H 1.09006 * 109.46872 * 300.00058 * 13 12 10 34 34 H 1.08999 * 109.47086 * 59.99841 * 13 12 10 35 35 H 0.97003 * 120.00210 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1998 0.0005 5 6 1.4736 -2.4131 -0.1039 6 6 2.2060 -3.5838 -0.1049 7 7 3.5259 -3.5227 -0.0025 8 6 4.1474 -2.3583 0.1007 9 7 5.5320 -2.3373 0.2066 10 6 6.2258 -3.4928 0.2039 11 8 5.6395 -4.5535 0.1083 12 7 7.5694 -3.4725 0.3072 13 6 8.3235 -4.7284 0.3036 14 6 9.7954 -4.4310 0.4295 15 1 10.1352 -3.4086 0.5041 16 6 10.7083 -5.4641 0.4492 17 7 11.9929 -5.2045 0.5585 18 14 10.1205 -7.2325 0.3193 19 1 10.0709 -7.6338 -1.1095 20 1 11.0590 -8.1209 1.0508 21 1 8.7645 -7.3483 0.9135 22 7 3.4824 -1.2135 0.1056 23 1 -0.3634 -0.5139 0.8900 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3792 1.5834 -1.0276 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 0.3970 -2.4351 -0.1869 30 1 1.7086 -4.5388 -0.1880 31 1 5.9999 -1.4909 0.2825 32 1 8.0371 -2.6261 0.3838 33 1 8.0042 -5.3463 1.1430 34 1 8.1391 -5.2603 -0.6298 35 1 12.6352 -5.9312 0.5721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432353356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:01 Heat of formation + Delta-G solvation = 32.212291 kcal Electronic energy + Delta-G solvation = -19260.927760 eV Core-core repulsion = 16101.684796 eV Total energy + Delta-G solvation = -3159.242964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.21996 -40.78200 -38.10447 -36.29738 -35.80500 -34.39525 -33.91985 -31.65705 -29.84163 -28.92265 -26.90267 -25.14380 -24.03526 -23.18586 -21.70285 -20.20036 -19.36585 -18.55237 -17.79556 -17.39039 -17.03344 -16.52840 -16.25148 -15.96460 -15.85227 -15.44568 -15.17048 -14.95988 -14.55552 -14.38778 -14.16831 -13.44373 -13.17579 -13.02975 -12.85914 -12.71043 -12.13001 -11.97455 -11.89206 -11.88293 -11.64116 -11.12740 -10.89797 -10.14658 -9.91654 -9.77426 -8.83222 -8.37979 -6.45027 0.11518 0.48997 1.17100 1.36500 1.38917 1.51950 1.97612 2.10126 2.31124 2.97442 3.04647 3.05675 3.41719 3.80120 3.95725 4.30835 4.44871 4.48665 4.54630 4.61888 4.75150 4.78946 4.92993 4.97894 5.06025 5.09154 5.24199 5.43162 5.47114 5.58213 5.90874 6.16043 6.20537 6.48188 6.55945 6.92127 7.18872 7.44500 7.57134 8.76681 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.047344 B = 0.003603 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.270719 B = 7769.163022 C = 8333.502430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.605 5.605 3 C 0.092 3.908 4 C 0.443 3.557 5 C -0.311 4.311 6 C 0.184 3.816 7 N -0.583 5.583 8 C 0.577 3.423 9 N -0.640 5.640 10 C 0.694 3.306 11 O -0.572 6.572 12 N -0.712 5.712 13 C 0.253 3.747 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.931 5.931 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.259 1.259 22 N -0.616 5.616 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.176 0.824 30 H 0.191 0.809 31 H 0.429 0.571 32 H 0.407 0.593 33 H 0.015 0.985 34 H 0.014 0.986 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.070 12.938 -1.253 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.319 5.319 3 C -0.051 4.051 4 C 0.198 3.802 5 C -0.340 4.340 6 C 0.023 3.977 7 N -0.308 5.308 8 C 0.219 3.781 9 N -0.293 5.293 10 C 0.393 3.607 11 O -0.446 6.446 12 N -0.367 5.367 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.173 4.173 17 N -0.570 5.570 18 Si 0.761 3.239 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.183 1.183 22 N -0.348 5.348 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.194 0.806 30 H 0.208 0.792 31 H 0.268 0.732 32 H 0.243 0.757 33 H 0.033 0.967 34 H 0.032 0.968 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.435 12.032 -1.244 28.165 hybrid contribution 0.114 0.077 -0.024 0.140 sum -25.321 12.110 -1.268 28.096 Atomic orbital electron populations 1.22016 0.75451 1.05107 1.02659 1.46529 1.06825 1.02272 1.76265 1.21766 0.97692 0.83730 1.01887 1.18479 0.86655 0.88053 0.86987 1.22279 1.03638 0.91517 1.16531 1.23386 0.87447 1.00011 0.86895 1.68529 1.12416 1.26910 1.22977 1.18743 0.85359 0.84753 0.89265 1.42044 1.02905 1.09983 1.74339 1.16015 0.82293 0.83579 0.78855 1.90973 1.68824 1.29546 1.55248 1.45120 1.03264 1.11512 1.76754 1.19027 0.89695 0.82441 0.95945 1.21253 0.89692 0.95218 1.52209 0.92113 1.25560 0.94657 1.03455 0.93587 1.69977 1.02132 1.34419 1.50493 0.85860 0.79081 0.79573 0.79419 1.18963 1.19834 1.18308 1.67043 1.09195 1.29007 1.29604 0.91380 0.87692 0.91148 0.92930 0.88669 0.91962 0.80621 0.79246 0.73215 0.75742 0.96709 0.96832 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 9.44 127.77 1.21 1.82 16 2 N -0.61 -9.54 3.38 -753.43 -2.54 -12.09 16 3 C 0.09 1.21 10.48 127.77 1.34 2.55 16 4 C 0.44 10.36 7.39 133.20 0.98 11.34 16 5 C -0.31 -6.32 9.40 22.58 0.21 -6.11 16 6 C 0.18 4.81 11.28 84.55 0.95 5.77 16 7 N -0.58 -21.35 7.86 -197.99 -1.56 -22.91 16 8 C 0.58 20.03 8.38 261.33 2.19 22.22 16 9 N -0.64 -21.88 5.40 -327.54 -1.77 -23.65 16 10 C 0.69 29.30 8.53 179.05 1.53 30.83 16 11 O -0.57 -28.60 14.54 -3.95 -0.06 -28.66 16 12 N -0.71 -30.03 5.55 -482.32 -2.68 -32.71 16 13 C 0.25 12.72 4.50 85.63 0.38 13.10 16 14 C -0.55 -30.48 9.83 25.60 0.25 -30.23 16 15 H 0.06 3.55 7.84 -2.91 -0.02 3.52 16 16 C 0.03 1.58 5.47 84.65 0.46 2.05 16 17 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 18 Si 0.94 44.61 27.47 68.60 1.88 46.49 16 19 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 22 N -0.62 -17.94 9.24 -195.27 -1.80 -19.75 16 23 H 0.07 0.40 8.13 -2.38 -0.02 0.39 16 24 H 0.10 0.23 7.79 -2.39 -0.02 0.21 16 25 H 0.07 0.39 7.78 -2.39 -0.02 0.37 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.68 7.92 -2.39 -0.02 0.66 16 28 H 0.06 1.09 7.33 -2.38 -0.02 1.07 16 29 H 0.18 2.09 6.85 -2.91 -0.02 2.07 16 30 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.43 11.59 8.83 -92.70 -0.82 10.77 16 32 H 0.41 14.82 8.34 -92.71 -0.77 14.05 16 33 H 0.01 0.79 7.20 -2.38 -0.02 0.77 16 34 H 0.01 0.71 7.57 -2.39 -0.02 0.70 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.94 302.94 0.77 -77.17 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.51 Total: 18.52 kcal Atomic # 6 Polarization: 43.83 SS G_CDS: 9.51 Total: 53.34 kcal Atomic # 7 Polarization: -156.80 SS G_CDS: -10.05 Total: -166.86 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.06 Total: -28.66 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -77.94 0.77 -77.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432353356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.379 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds