Wall clock time and date at job start Mon Mar 30 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48499 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47273 * 300.00245 * 3 2 1 6 6 H 1.48495 * 109.47111 * 60.00511 * 3 2 1 7 7 C 1.37876 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99521 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.67486 * 61.78652 * 9 7 2 11 11 C 1.54886 * 110.75621 * 298.54483 * 9 7 2 12 12 C 1.54263 * 104.19606 * 203.74571 * 11 9 7 13 13 C 1.53878 * 106.60104 * 23.61253 * 12 11 9 14 14 H 1.08992 * 110.03300 * 240.66656 * 13 12 11 15 15 N 1.46495 * 110.03240 * 119.28257 * 13 12 11 16 16 C 1.34770 * 120.00184 * 87.09714 * 15 13 12 17 17 O 1.21283 * 120.00089 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00399 * 180.02562 * 16 15 13 19 19 H 1.08999 * 110.73328 * 303.42793 * 18 16 15 20 20 C 1.54985 * 110.83471 * 179.97438 * 18 16 15 21 21 C 1.54274 * 103.75149 * 204.70107 * 20 18 16 22 22 C 1.51450 * 106.88313 * 23.10193 * 21 20 18 23 23 O 1.20754 * 126.34159 * 180.35057 * 22 21 20 24 24 C 1.51931 * 107.27192 * 0.38889 * 22 21 20 25 25 C 1.54274 * 106.63781 * 359.97438 * 13 12 11 26 26 H 0.97002 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.48485 * 85.06913 * 11 9 7 28 28 H 1.09004 * 110.60392 * 322.48000 * 11 9 7 29 29 H 1.09004 * 110.03496 * 264.32819 * 12 11 9 30 30 H 1.09004 * 110.03338 * 142.89759 * 12 11 9 31 31 H 0.97000 * 119.99990 * 267.09540 * 15 13 12 32 32 H 1.09008 * 110.56675 * 86.13323 * 20 18 16 33 33 H 1.08998 * 110.56647 * 323.27102 * 20 18 16 34 34 H 1.09002 * 109.98436 * 142.47266 * 21 20 18 35 35 H 1.09004 * 109.98830 * 263.73658 * 21 20 18 36 36 H 1.08998 * 110.41946 * 217.44699 * 24 22 21 37 37 H 1.09003 * 110.56163 * 94.98140 * 24 22 21 38 38 H 1.09002 * 110.48769 * 95.08747 * 25 13 12 39 39 H 1.08991 * 110.48373 * 217.73553 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6407 -2.5911 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1493 1.4442 13 6 1.3581 -4.8278 0.7184 14 1 0.9841 -5.4664 -0.0817 15 7 2.1435 -5.6208 1.6673 16 6 1.7971 -6.8969 1.9279 17 8 0.8350 -7.3887 1.3771 18 6 2.6047 -7.7126 2.9045 19 1 3.6519 -7.7483 2.6042 20 6 2.0216 -9.1418 3.0435 21 6 2.4912 -9.5951 4.4414 22 6 2.7669 -8.3390 5.2415 23 8 3.1585 -8.2890 6.3827 24 6 2.4584 -7.1543 4.3418 25 6 2.2262 -3.6965 0.1296 26 1 -0.4850 0.8401 0.0004 27 1 -0.5834 -2.1352 1.1271 28 1 0.8940 -2.2100 2.1359 29 1 -0.7612 -4.4581 0.9956 30 1 0.1971 -4.4102 2.5024 31 1 2.9128 -5.2274 2.1081 32 1 2.4265 -9.7973 2.2723 33 1 0.9330 -9.1177 2.9943 34 1 1.7096 -10.1809 4.9252 35 1 3.4014 -10.1886 4.3545 36 1 3.1744 -6.3504 4.5126 37 1 1.4416 -6.7997 4.5109 38 1 3.0435 -3.4505 0.8075 39 1 2.6132 -3.9823 -0.8484 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522059685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:24 Heat of formation + Delta-G solvation = -101.502291 kcal Electronic energy + Delta-G solvation = -19966.961183 eV Core-core repulsion = 16873.167512 eV Total energy + Delta-G solvation = -3093.793671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46671 -39.26676 -37.28329 -35.86982 -33.72835 -32.02923 -29.67761 -28.21759 -27.68799 -26.69453 -23.96983 -22.39563 -20.19254 -19.79528 -19.52785 -19.04447 -17.41231 -16.72208 -16.40261 -15.69921 -15.33403 -14.87976 -14.79800 -14.49312 -14.17856 -13.85683 -13.59629 -13.08516 -12.69984 -12.39746 -12.10562 -11.89256 -11.75274 -11.54096 -11.15305 -11.08867 -11.03962 -10.96377 -10.57651 -10.35733 -10.01040 -9.93011 -9.56273 -9.53490 -9.24039 -8.83644 -8.66203 -8.40087 -6.03723 -4.07458 1.60760 2.70562 3.27268 3.31748 3.35957 3.38936 3.86044 4.05276 4.40849 4.42364 4.64934 4.84445 4.92357 5.05829 5.09449 5.28413 5.31971 5.47075 5.52899 5.58588 5.62292 5.76748 5.78707 5.94997 6.27510 6.30585 6.54746 6.62107 6.70197 6.86331 6.88334 7.15741 7.22431 7.29382 7.69128 7.73636 7.85339 7.99512 8.37455 8.40458 8.94910 9.57123 11.05330 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.003789 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.825093 B = 7388.093977 C = 7778.950678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.137 3.863 14 H 0.080 0.920 15 N -0.715 5.715 16 C 0.517 3.483 17 O -0.542 6.542 18 C -0.113 4.113 19 H 0.108 0.892 20 C -0.101 4.101 21 C -0.185 4.185 22 C 0.373 3.627 23 O -0.446 6.446 24 C -0.174 4.174 25 C -0.121 4.121 26 H 0.259 0.741 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.398 0.602 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -15.749 6.403 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.033 3.967 14 H 0.098 0.902 15 N -0.365 5.365 16 C 0.302 3.698 17 O -0.419 6.419 18 C -0.135 4.135 19 H 0.126 0.874 20 C -0.138 4.138 21 C -0.222 4.222 22 C 0.248 3.752 23 O -0.319 6.319 24 C -0.212 4.212 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.232 0.768 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.547 -15.946 6.596 17.845 hybrid contribution 0.775 1.210 0.144 1.444 sum 5.322 -14.736 6.740 17.055 Atomic orbital electron populations 1.69968 1.05877 1.26365 1.50406 1.24976 0.94831 0.99034 0.95053 0.86587 0.80127 0.84001 0.77567 1.19833 1.21070 1.21085 1.21130 0.92786 0.90424 1.50979 0.92599 1.19570 0.91999 0.91055 0.94152 0.94974 1.22305 1.01702 0.90304 0.99530 1.22649 0.97021 0.98903 0.98716 1.21897 0.92209 0.92045 0.90528 0.90191 1.46377 1.32488 1.12281 1.45348 1.20240 0.84894 0.82230 0.82442 1.90693 1.28347 1.71195 1.51700 1.22230 1.01344 0.96320 0.93604 0.87442 1.22189 1.02754 0.93758 0.95142 1.22717 1.03980 0.98399 0.97137 1.24918 0.70741 0.92930 0.86590 1.90439 1.34760 1.88774 1.17904 1.22892 1.05434 0.99104 0.93796 1.22772 0.98728 0.95452 0.98974 0.93098 0.91242 0.93509 0.92599 0.93267 0.76788 0.90037 0.89174 0.88070 0.88198 0.88116 0.87076 0.92062 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 12.02 55.43 0.67 -24.25 16 2 C 0.06 1.70 5.33 -17.82 -0.10 1.60 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.55 8.54 -34.44 -0.29 -13.84 16 8 H 0.06 1.45 7.78 -52.49 -0.41 1.04 16 9 C 0.05 1.21 2.82 -89.73 -0.25 0.95 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.24 5.57 -25.08 -0.14 -2.38 16 12 C -0.13 -2.51 6.59 -25.61 -0.17 -2.68 16 13 C 0.14 2.34 3.23 -66.81 -0.22 2.13 16 14 H 0.08 1.46 7.59 -51.93 -0.39 1.06 16 15 N -0.72 -9.69 4.99 -52.72 -0.26 -9.95 16 16 C 0.52 6.81 7.13 -10.99 -0.08 6.74 16 17 O -0.54 -9.22 15.39 5.55 0.09 -9.13 16 18 C -0.11 -1.01 3.32 -89.73 -0.30 -1.31 16 19 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.10 -0.81 5.97 -25.02 -0.15 -0.96 16 21 C -0.18 -1.28 6.69 -26.85 -0.18 -1.46 16 22 C 0.37 3.51 7.89 -28.06 -0.22 3.29 16 23 O -0.45 -5.79 17.99 6.00 0.11 -5.68 16 24 C -0.17 -1.50 6.17 -26.28 -0.16 -1.66 16 25 C -0.12 -2.29 5.95 -25.02 -0.15 -2.43 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 28 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.86 7.92 -51.93 -0.41 0.45 16 31 H 0.40 4.47 8.35 -40.82 -0.34 4.13 16 32 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.09 0.87 7.42 -51.93 -0.39 0.49 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 1.02 8.03 -51.93 -0.42 0.61 16 38 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -30.90 320.02 -8.08 -38.97 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.07 Total: 1.52 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.40 Total: -12.03 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.40 Total: -34.21 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.19 Total: -14.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.90 -8.08 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522059685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.529 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds