Wall clock time and date at job start Mon Mar 30 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48499 * 109.46952 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47273 * 300.00245 * 3 2 1 6 6 H 1.48495 * 109.47111 * 60.00511 * 3 2 1 7 7 C 1.37876 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99928 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99521 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.67486 * 61.78652 * 9 7 2 11 11 C 1.54886 * 110.75621 * 298.54483 * 9 7 2 12 12 C 1.54263 * 104.19606 * 203.74571 * 11 9 7 13 13 C 1.53878 * 106.60104 * 23.61253 * 12 11 9 14 14 H 1.08992 * 110.03300 * 240.66656 * 13 12 11 15 15 N 1.46495 * 110.03240 * 119.28257 * 13 12 11 16 16 C 1.34770 * 120.00184 * 87.09714 * 15 13 12 17 17 O 1.21283 * 120.00089 * 359.97438 * 16 15 13 18 18 C 1.50703 * 120.00399 * 180.02562 * 16 15 13 19 19 H 1.08999 * 110.73328 * 303.42793 * 18 16 15 20 20 C 1.54985 * 110.83471 * 179.97438 * 18 16 15 21 21 C 1.54274 * 103.75149 * 204.70107 * 20 18 16 22 22 C 1.51450 * 106.88313 * 23.10193 * 21 20 18 23 23 O 1.20754 * 126.34159 * 180.35057 * 22 21 20 24 24 C 1.51931 * 107.27192 * 0.38889 * 22 21 20 25 25 C 1.54274 * 106.63781 * 359.97438 * 13 12 11 26 26 H 0.97002 * 119.99975 * 359.97438 * 1 2 3 27 27 H 1.09003 * 110.48485 * 85.06913 * 11 9 7 28 28 H 1.09004 * 110.60392 * 322.48000 * 11 9 7 29 29 H 1.09004 * 110.03496 * 264.32819 * 12 11 9 30 30 H 1.09004 * 110.03338 * 142.89759 * 12 11 9 31 31 H 0.97000 * 119.99990 * 267.09540 * 15 13 12 32 32 H 1.09008 * 110.56675 * 86.13323 * 20 18 16 33 33 H 1.08998 * 110.56647 * 323.27102 * 20 18 16 34 34 H 1.09002 * 109.98436 * 142.47266 * 21 20 18 35 35 H 1.09004 * 109.98830 * 263.73658 * 21 20 18 36 36 H 1.08998 * 110.41946 * 217.44699 * 24 22 21 37 37 H 1.09003 * 110.56163 * 94.98140 * 24 22 21 38 38 H 1.09002 * 110.48769 * 95.08747 * 25 13 12 39 39 H 1.08991 * 110.48373 * 217.73553 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6407 -2.5911 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1493 1.4442 13 6 1.3581 -4.8278 0.7184 14 1 0.9841 -5.4664 -0.0817 15 7 2.1435 -5.6208 1.6673 16 6 1.7971 -6.8969 1.9279 17 8 0.8350 -7.3887 1.3771 18 6 2.6047 -7.7126 2.9045 19 1 3.6519 -7.7483 2.6042 20 6 2.0216 -9.1418 3.0435 21 6 2.4912 -9.5951 4.4414 22 6 2.7669 -8.3390 5.2415 23 8 3.1585 -8.2890 6.3827 24 6 2.4584 -7.1543 4.3418 25 6 2.2262 -3.6965 0.1296 26 1 -0.4850 0.8401 0.0004 27 1 -0.5834 -2.1352 1.1271 28 1 0.8940 -2.2100 2.1359 29 1 -0.7612 -4.4581 0.9956 30 1 0.1971 -4.4102 2.5024 31 1 2.9128 -5.2274 2.1081 32 1 2.4265 -9.7973 2.2723 33 1 0.9330 -9.1177 2.9943 34 1 1.7096 -10.1809 4.9252 35 1 3.4014 -10.1886 4.3545 36 1 3.1744 -6.3504 4.5126 37 1 1.4416 -6.7997 4.5109 38 1 3.0435 -3.4505 0.8075 39 1 2.6132 -3.9823 -0.8484 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522059685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:23 Heat of formation + Delta-G solvation = -120.623177 kcal Electronic energy + Delta-G solvation = -19967.790327 eV Core-core repulsion = 16873.167512 eV Total energy + Delta-G solvation = -3094.622815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40384 -40.28061 -38.74169 -36.75295 -35.28196 -33.77403 -30.51833 -29.91441 -28.77679 -27.91502 -25.79309 -23.34876 -21.52027 -21.01669 -20.57559 -20.37973 -18.47538 -18.37009 -17.30670 -16.89636 -16.59788 -16.37937 -15.98008 -15.84948 -15.30532 -14.86430 -14.50766 -14.36544 -14.02933 -13.90311 -13.62699 -13.03672 -12.83936 -12.80898 -12.58207 -12.47837 -12.34021 -12.22710 -12.03507 -11.70659 -11.64941 -11.37318 -11.08247 -10.87559 -10.79044 -10.47172 -10.44928 -9.94841 -8.09193 -6.19452 0.88497 1.42273 1.44959 1.55275 1.66639 2.26132 2.46064 3.14889 3.22000 3.36179 3.71290 3.84379 4.00058 4.06859 4.20432 4.22581 4.30703 4.37166 4.42987 4.71661 4.72727 4.80985 4.85892 4.94375 5.00984 5.05667 5.09093 5.17820 5.18521 5.29895 5.33919 5.43136 5.67997 5.71308 5.95647 6.01419 6.38517 6.44814 6.66972 6.91921 7.33616 7.48679 8.99287 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.003789 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.825093 B = 7388.093977 C = 7778.950678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.038 3.962 10 H -0.001 1.001 11 C -0.090 4.090 12 C -0.124 4.124 13 C 0.151 3.849 14 H 0.071 0.929 15 N -0.708 5.708 16 C 0.517 3.483 17 O -0.581 6.581 18 C -0.102 4.102 19 H 0.139 0.861 20 C -0.098 4.098 21 C -0.174 4.174 22 C 0.378 3.622 23 O -0.486 6.486 24 C -0.173 4.173 25 C -0.107 4.107 26 H 0.258 0.742 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.230 -16.930 7.044 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.017 0.983 11 C -0.128 4.128 12 C -0.163 4.163 13 C 0.046 3.954 14 H 0.089 0.911 15 N -0.359 5.359 16 C 0.305 3.695 17 O -0.461 6.461 18 C -0.123 4.123 19 H 0.156 0.844 20 C -0.136 4.136 21 C -0.211 4.211 22 C 0.256 3.744 23 O -0.361 6.361 24 C -0.211 4.211 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.615 -17.136 7.240 19.744 hybrid contribution 0.092 1.573 -0.095 1.579 sum 6.707 -15.562 7.145 18.391 Atomic orbital electron populations 1.70108 1.07328 1.26997 1.51562 1.25769 0.95586 1.02462 0.94981 0.85588 0.79336 0.79909 0.77306 1.18695 1.21102 1.20948 1.21530 0.93162 0.91662 1.50206 0.92237 1.19567 0.92912 0.92438 0.93175 0.98297 1.22069 0.99537 0.92647 0.98571 1.22524 0.97687 0.96199 0.99856 1.21450 0.91548 0.91639 0.90808 0.91084 1.46195 1.32577 1.12368 1.44768 1.20939 0.84473 0.81842 0.82266 1.90688 1.30202 1.71882 1.53294 1.22236 1.02150 0.95739 0.92225 0.84357 1.22178 1.01682 0.93517 0.96243 1.22677 1.05226 0.97450 0.95743 1.25192 0.69159 0.94106 0.85938 1.90438 1.36812 1.89341 1.19556 1.22894 1.05431 0.99408 0.93377 1.22568 0.98048 0.93823 1.00047 0.93262 0.94577 0.94361 0.93260 0.91787 0.75040 0.88701 0.91029 0.87054 0.86022 0.86912 0.87742 0.90669 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.99 12.02 21.45 0.26 -52.73 16 2 C 0.01 0.58 5.33 84.65 0.45 1.03 16 3 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.53 -27.84 8.54 25.60 0.22 -27.62 16 8 H 0.06 3.03 7.78 -2.91 -0.02 3.00 16 9 C 0.04 1.82 2.82 -10.22 -0.03 1.79 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 11 C -0.09 -4.11 5.57 31.67 0.18 -3.93 16 12 C -0.12 -4.61 6.59 31.32 0.21 -4.40 16 13 C 0.15 4.98 3.23 45.72 0.15 5.13 16 14 H 0.07 2.53 7.59 -2.39 -0.02 2.51 16 15 N -0.71 -17.47 4.99 -439.11 -2.19 -19.66 16 16 C 0.52 12.46 7.13 87.66 0.62 13.09 16 17 O -0.58 -19.00 15.39 -3.04 -0.05 -19.04 16 18 C -0.10 -1.49 3.32 -10.22 -0.03 -1.53 16 19 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 20 C -0.10 -1.31 5.97 31.71 0.19 -1.12 16 21 C -0.17 -1.87 6.69 30.52 0.20 -1.67 16 22 C 0.38 6.23 7.89 29.73 0.23 6.47 16 23 O -0.49 -11.89 17.99 -1.43 -0.03 -11.91 16 24 C -0.17 -2.53 6.17 30.88 0.19 -2.34 16 25 C -0.11 -3.90 5.95 31.70 0.19 -3.72 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.04 1.86 7.37 -2.39 -0.02 1.84 16 28 H 0.04 1.77 8.04 -2.38 -0.02 1.75 16 29 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 2.17 7.92 -2.39 -0.02 2.16 16 31 H 0.41 7.90 8.35 -92.71 -0.77 7.13 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.07 1.26 7.42 -2.39 -0.02 1.25 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.73 8.03 -2.39 -0.02 1.71 16 38 H 0.07 2.54 7.63 -2.39 -0.02 2.52 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.13 320.02 3.06 -65.06 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.27 Total: 12.44 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 2.77 Total: -18.81 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -1.93 Total: -72.39 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.07 Total: -30.96 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -68.13 3.06 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522059685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.558 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds