Wall clock time and date at job start Mon Mar 30 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47254 * 270.00209 * 3 2 1 5 5 H 1.48497 * 109.47188 * 30.00221 * 3 2 1 6 6 H 1.48498 * 109.47084 * 150.00489 * 3 2 1 7 7 C 1.37872 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43434 * 57.45890 * 9 7 2 11 11 C 1.54888 * 110.59868 * 294.84369 * 9 7 2 12 12 C 1.54891 * 102.75120 * 203.32223 * 11 9 7 13 13 C 1.54267 * 104.19324 * 37.94011 * 12 11 9 14 14 H 1.08995 * 110.03032 * 217.10762 * 13 12 11 15 15 N 1.46498 * 110.03218 * 95.67887 * 13 12 11 16 16 C 1.34773 * 120.00000 * 87.82957 * 15 13 12 17 17 O 1.21283 * 120.00353 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99861 * 179.97438 * 16 15 13 19 19 H 1.09007 * 110.74132 * 59.30294 * 18 16 15 20 20 C 1.54985 * 110.83337 * 182.73456 * 18 16 15 21 21 C 1.54283 * 103.75039 * 155.29697 * 20 18 16 22 22 C 1.51444 * 106.85136 * 336.87569 * 21 20 18 23 23 O 1.20761 * 126.34502 * 179.65834 * 22 21 20 24 24 C 1.52066 * 107.41298 * 359.82229 * 22 21 20 25 25 C 1.53876 * 106.59870 * 336.39035 * 13 12 11 26 26 H 0.97002 * 120.00064 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.75648 * 321.63452 * 11 9 7 28 28 H 1.09004 * 110.75897 * 84.81904 * 11 9 7 29 29 H 1.09004 * 110.48613 * 279.26383 * 12 11 9 30 30 H 1.08994 * 110.48745 * 156.61801 * 12 11 9 31 31 H 0.97001 * 119.99955 * 267.83420 * 15 13 12 32 32 H 1.09002 * 110.57141 * 273.86038 * 20 18 16 33 33 H 1.08991 * 110.57108 * 36.58164 * 20 18 16 34 34 H 1.08995 * 109.98390 * 96.22461 * 21 20 18 35 35 H 1.08996 * 109.98451 * 217.48342 * 21 20 18 36 36 H 1.09005 * 110.34396 * 264.85789 * 24 22 21 37 37 H 1.08993 * 110.63853 * 142.27108 * 24 22 21 38 38 H 1.08998 * 110.02768 * 119.28860 * 25 13 12 39 39 H 1.08994 * 110.03051 * 240.71540 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8613 11 6 0.4516 -2.6668 1.3154 12 6 0.2734 -4.2023 1.4139 13 6 1.6110 -4.7721 0.8982 14 1 1.4325 -5.6794 0.3212 15 7 2.5015 -5.0604 2.0252 16 6 2.4456 -6.2592 2.6386 17 8 1.6585 -7.0995 2.2573 18 6 3.3621 -6.5560 3.7975 19 1 3.2028 -5.8443 4.6077 20 6 3.1675 -8.0106 4.2956 21 6 4.5136 -8.3511 4.9682 22 6 5.5518 -7.4284 4.3646 23 8 6.7261 -7.3921 4.6439 24 6 4.8430 -6.5518 3.3439 25 6 2.2325 -3.6892 -0.0012 26 1 -0.4850 0.8401 0.0004 27 1 1.0213 -2.2888 2.1644 28 1 -0.5145 -2.1666 1.2470 29 1 -0.5509 -4.5320 0.7815 30 1 0.1050 -4.5012 2.4485 31 1 3.1312 -4.3885 2.3299 32 1 2.3540 -8.0621 5.0193 33 1 2.9756 -8.6801 3.4572 34 1 4.4460 -8.1833 6.0430 35 1 4.7771 -9.3899 4.7695 36 1 4.9368 -6.9804 2.3461 37 1 5.2442 -5.5386 3.3632 38 1 3.1967 -3.3783 0.4009 39 1 2.3557 -4.0711 -1.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522059686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:27 Heat of formation + Delta-G solvation = -101.874170 kcal Electronic energy + Delta-G solvation = -20044.075488 eV Core-core repulsion = 16950.265691 eV Total energy + Delta-G solvation = -3093.809797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44245 -39.25841 -37.30425 -35.84410 -33.63038 -32.01388 -29.64696 -28.20685 -27.68440 -26.74930 -23.94437 -22.46183 -20.16271 -19.73763 -19.44664 -19.09765 -17.33834 -16.64842 -16.46725 -15.80855 -15.17056 -15.04235 -14.72403 -14.38717 -14.14845 -13.82682 -13.63255 -13.03982 -12.83534 -12.40297 -12.08702 -11.79769 -11.74990 -11.52212 -11.08576 -11.04433 -11.02316 -10.88930 -10.59522 -10.46187 -10.00698 -9.92288 -9.62476 -9.49003 -9.25300 -8.86036 -8.64447 -8.39209 -6.04806 -4.08178 1.62365 2.73969 3.27298 3.34713 3.35256 3.37352 3.87150 4.07530 4.40220 4.43892 4.68587 4.86638 4.94413 5.08846 5.12772 5.27118 5.35159 5.48891 5.54152 5.60166 5.61892 5.77561 5.80427 5.96501 6.27085 6.30024 6.55354 6.59415 6.70550 6.87056 6.90305 7.17182 7.20914 7.29659 7.65980 7.77999 7.82529 7.98379 8.38901 8.41929 8.94556 9.56279 11.04613 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.004167 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.786059 B = 6718.304476 C = 7429.542375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.033 0.967 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.138 3.862 14 H 0.076 0.924 15 N -0.711 5.711 16 C 0.518 3.482 17 O -0.545 6.545 18 C -0.114 4.114 19 H 0.109 0.891 20 C -0.100 4.100 21 C -0.184 4.184 22 C 0.373 3.627 23 O -0.447 6.447 24 C -0.174 4.174 25 C -0.123 4.123 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -13.065 8.313 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.035 3.965 14 H 0.094 0.906 15 N -0.361 5.361 16 C 0.303 3.697 17 O -0.423 6.423 18 C -0.135 4.135 19 H 0.127 0.873 20 C -0.138 4.138 21 C -0.222 4.222 22 C 0.248 3.752 23 O -0.319 6.319 24 C -0.212 4.212 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.235 0.765 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.876 -13.516 8.164 16.848 hybrid contribution 0.590 1.404 0.149 1.530 sum 6.466 -12.111 8.313 16.050 Atomic orbital electron populations 1.69954 1.05892 1.26489 1.50303 1.24975 0.94814 0.99009 0.95061 0.86659 0.79864 0.83737 0.78095 1.20732 1.21302 1.19976 1.21160 0.92639 0.90489 1.51063 0.92717 1.19465 0.92455 0.91109 0.94070 0.94914 1.22457 1.01364 0.90466 0.99513 1.22836 0.95828 0.99246 0.99501 1.21799 0.89990 0.98401 0.86345 0.90562 1.46331 1.40157 1.15377 1.34237 1.20228 0.83692 0.82258 0.83546 1.90683 1.39397 1.46795 1.65389 1.22241 0.93562 1.00052 0.97690 0.87306 1.22173 0.95806 0.94554 1.01232 1.22707 0.95691 1.01421 1.02372 1.24972 0.88127 0.81747 0.80372 1.90439 1.17721 1.65186 1.58592 1.22927 0.94569 1.02706 1.01043 1.22612 1.00381 0.95931 0.97166 0.93043 0.93521 0.91476 0.92035 0.93179 0.76515 0.90007 0.89290 0.88158 0.88103 0.87199 0.88009 0.92010 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 12.29 55.43 0.68 -24.14 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.41 8.47 -34.44 -0.29 -13.70 16 8 H 0.05 1.39 7.55 -52.49 -0.40 1.00 16 9 C 0.05 1.11 2.71 -90.12 -0.24 0.87 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.19 5.75 -24.74 -0.14 -2.34 16 12 C -0.14 -2.52 6.54 -25.07 -0.16 -2.68 16 13 C 0.14 2.36 3.25 -66.81 -0.22 2.14 16 14 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 15 N -0.71 -10.01 5.01 -52.72 -0.26 -10.27 16 16 C 0.52 6.98 7.14 -10.99 -0.08 6.90 16 17 O -0.54 -9.27 15.40 5.56 0.09 -9.19 16 18 C -0.11 -1.06 3.31 -89.73 -0.30 -1.36 16 19 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 20 C -0.10 -0.83 5.95 -25.01 -0.15 -0.98 16 21 C -0.18 -1.31 6.69 -26.85 -0.18 -1.49 16 22 C 0.37 3.55 7.89 -27.99 -0.22 3.33 16 23 O -0.45 -5.84 17.99 6.00 0.11 -5.73 16 24 C -0.17 -1.51 6.17 -26.21 -0.16 -1.67 16 25 C -0.12 -2.31 6.13 -25.61 -0.16 -2.47 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 28 H 0.07 1.64 7.55 -51.93 -0.39 1.24 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.40 4.96 8.32 -40.82 -0.34 4.62 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.86 7.46 -51.93 -0.39 0.47 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.12 7.14 -51.93 -0.37 0.75 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -30.58 320.05 -8.03 -38.62 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.05 Total: 2.13 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.40 Total: -11.85 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.42 Total: -34.41 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.19 Total: -14.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.58 -8.03 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522059686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.259 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds