Wall clock time and date at job start Mon Mar 30 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47254 * 270.00209 * 3 2 1 5 5 H 1.48497 * 109.47188 * 30.00221 * 3 2 1 6 6 H 1.48498 * 109.47084 * 150.00489 * 3 2 1 7 7 C 1.37872 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.43434 * 57.45890 * 9 7 2 11 11 C 1.54888 * 110.59868 * 294.84369 * 9 7 2 12 12 C 1.54891 * 102.75120 * 203.32223 * 11 9 7 13 13 C 1.54267 * 104.19324 * 37.94011 * 12 11 9 14 14 H 1.08995 * 110.03032 * 217.10762 * 13 12 11 15 15 N 1.46498 * 110.03218 * 95.67887 * 13 12 11 16 16 C 1.34773 * 120.00000 * 87.82957 * 15 13 12 17 17 O 1.21283 * 120.00353 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99861 * 179.97438 * 16 15 13 19 19 H 1.09007 * 110.74132 * 59.30294 * 18 16 15 20 20 C 1.54985 * 110.83337 * 182.73456 * 18 16 15 21 21 C 1.54283 * 103.75039 * 155.29697 * 20 18 16 22 22 C 1.51444 * 106.85136 * 336.87569 * 21 20 18 23 23 O 1.20761 * 126.34502 * 179.65834 * 22 21 20 24 24 C 1.52066 * 107.41298 * 359.82229 * 22 21 20 25 25 C 1.53876 * 106.59870 * 336.39035 * 13 12 11 26 26 H 0.97002 * 120.00064 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.75648 * 321.63452 * 11 9 7 28 28 H 1.09004 * 110.75897 * 84.81904 * 11 9 7 29 29 H 1.09004 * 110.48613 * 279.26383 * 12 11 9 30 30 H 1.08994 * 110.48745 * 156.61801 * 12 11 9 31 31 H 0.97001 * 119.99955 * 267.83420 * 15 13 12 32 32 H 1.09002 * 110.57141 * 273.86038 * 20 18 16 33 33 H 1.08991 * 110.57108 * 36.58164 * 20 18 16 34 34 H 1.08995 * 109.98390 * 96.22461 * 21 20 18 35 35 H 1.08996 * 109.98451 * 217.48342 * 21 20 18 36 36 H 1.09005 * 110.34396 * 264.85789 * 24 22 21 37 37 H 1.08993 * 110.63853 * 142.27108 * 24 22 21 38 38 H 1.08998 * 110.02768 * 119.28860 * 25 13 12 39 39 H 1.08994 * 110.03051 * 240.71540 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5846 -2.5538 -0.8613 11 6 0.4516 -2.6668 1.3154 12 6 0.2734 -4.2023 1.4139 13 6 1.6110 -4.7721 0.8982 14 1 1.4325 -5.6794 0.3212 15 7 2.5015 -5.0604 2.0252 16 6 2.4456 -6.2592 2.6386 17 8 1.6585 -7.0995 2.2573 18 6 3.3621 -6.5560 3.7975 19 1 3.2028 -5.8443 4.6077 20 6 3.1675 -8.0106 4.2956 21 6 4.5136 -8.3511 4.9682 22 6 5.5518 -7.4284 4.3646 23 8 6.7261 -7.3921 4.6439 24 6 4.8430 -6.5518 3.3439 25 6 2.2325 -3.6892 -0.0012 26 1 -0.4850 0.8401 0.0004 27 1 1.0213 -2.2888 2.1644 28 1 -0.5145 -2.1666 1.2470 29 1 -0.5509 -4.5320 0.7815 30 1 0.1050 -4.5012 2.4485 31 1 3.1312 -4.3885 2.3299 32 1 2.3540 -8.0621 5.0193 33 1 2.9756 -8.6801 3.4572 34 1 4.4460 -8.1833 6.0430 35 1 4.7771 -9.3899 4.7695 36 1 4.9368 -6.9804 2.3461 37 1 5.2442 -5.5386 3.3632 38 1 3.1967 -3.3783 0.4009 39 1 2.3557 -4.0711 -1.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522059686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:27 Heat of formation + Delta-G solvation = -120.531633 kcal Electronic energy + Delta-G solvation = -20044.884536 eV Core-core repulsion = 16950.265691 eV Total energy + Delta-G solvation = -3094.618845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39901 -40.28372 -38.74726 -36.73925 -35.20628 -33.72426 -30.51555 -29.88034 -28.80926 -27.93347 -25.77202 -23.43040 -21.42908 -20.93308 -20.58791 -20.39362 -18.49880 -18.31601 -17.25095 -17.08201 -16.57719 -16.15886 -16.09648 -15.75256 -15.26096 -14.93156 -14.58483 -14.39688 -14.00239 -13.86315 -13.55883 -12.94300 -12.83544 -12.76814 -12.56251 -12.38588 -12.37196 -12.26591 -12.06844 -11.70630 -11.63520 -11.42525 -11.05915 -10.88406 -10.78798 -10.47008 -10.42968 -9.91894 -8.08815 -6.18226 0.89275 1.43545 1.45355 1.54102 1.67836 2.28771 2.46358 3.14711 3.22829 3.36582 3.71580 3.87125 4.01635 4.05246 4.21483 4.25004 4.31259 4.38177 4.43164 4.72911 4.73669 4.79786 4.86430 4.96500 5.01353 5.04345 5.13321 5.18660 5.21611 5.28226 5.31984 5.45880 5.68291 5.74022 5.93923 6.01878 6.40112 6.45297 6.67951 6.93591 7.33349 7.49679 9.00055 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026615 B = 0.004167 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.786059 B = 6718.304476 C = 7429.542375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.037 3.963 10 H -0.002 1.002 11 C -0.089 4.089 12 C -0.125 4.125 13 C 0.151 3.849 14 H 0.076 0.924 15 N -0.708 5.708 16 C 0.519 3.481 17 O -0.580 6.580 18 C -0.105 4.105 19 H 0.132 0.868 20 C -0.097 4.097 21 C -0.174 4.174 22 C 0.378 3.622 23 O -0.486 6.486 24 C -0.172 4.172 25 C -0.111 4.111 26 H 0.258 0.742 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.411 0.589 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -13.709 9.571 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.127 4.127 12 C -0.164 4.164 13 C 0.046 3.954 14 H 0.094 0.906 15 N -0.358 5.358 16 C 0.306 3.694 17 O -0.460 6.460 18 C -0.127 4.127 19 H 0.150 0.850 20 C -0.135 4.135 21 C -0.211 4.211 22 C 0.256 3.744 23 O -0.362 6.362 24 C -0.210 4.210 25 C -0.149 4.149 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.247 0.753 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.296 -14.162 9.432 18.514 hybrid contribution 0.106 1.588 -0.284 1.617 sum 7.402 -12.574 9.148 17.221 Atomic orbital electron populations 1.70093 1.07333 1.27050 1.51589 1.25744 0.95536 1.02366 0.95034 0.85675 0.78924 0.79731 0.78025 1.20565 1.21448 1.18807 1.21569 0.93061 0.91675 1.50145 0.92269 1.19453 0.93039 0.92341 0.93300 0.98381 1.22217 0.99236 0.92715 0.98566 1.22722 0.96950 0.96519 1.00172 1.21433 0.89447 0.97492 0.87031 0.90590 1.46222 1.39865 1.16187 1.33564 1.20874 0.83487 0.81182 0.83820 1.90676 1.41053 1.47722 1.66528 1.22242 0.92709 1.01346 0.96361 0.85028 1.22158 0.96813 0.93436 1.01051 1.22667 0.93826 1.01464 1.03113 1.25243 0.87739 0.81631 0.79832 1.90438 1.19370 1.66462 1.59909 1.22921 0.93903 1.03287 1.00848 1.22422 0.99582 0.94566 0.98318 0.93276 0.93994 0.94739 0.92265 0.92218 0.75278 0.89016 0.90696 0.86255 0.86838 0.87223 0.87035 0.90941 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.61 12.29 21.44 0.26 -52.35 16 2 C 0.01 0.64 5.35 84.65 0.45 1.09 16 3 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.53 -27.37 8.47 25.60 0.22 -27.16 16 8 H 0.06 2.96 7.55 -2.91 -0.02 2.93 16 9 C 0.04 1.77 2.71 -10.47 -0.03 1.74 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 C -0.09 -3.97 5.75 31.89 0.18 -3.78 16 12 C -0.12 -4.57 6.54 31.67 0.21 -4.36 16 13 C 0.15 4.94 3.25 45.72 0.15 5.09 16 14 H 0.08 2.56 7.57 -2.39 -0.02 2.54 16 15 N -0.71 -18.35 5.01 -439.11 -2.20 -20.55 16 16 C 0.52 12.82 7.14 87.66 0.63 13.45 16 17 O -0.58 -18.79 15.40 -3.04 -0.05 -18.84 16 18 C -0.11 -1.66 3.31 -10.22 -0.03 -1.69 16 19 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 20 C -0.10 -1.34 5.95 31.71 0.19 -1.15 16 21 C -0.17 -1.94 6.69 30.52 0.20 -1.73 16 22 C 0.38 6.31 7.89 29.78 0.23 6.55 16 23 O -0.49 -11.98 17.99 -1.45 -0.03 -12.00 16 24 C -0.17 -2.53 6.17 30.93 0.19 -2.34 16 25 C -0.11 -4.06 6.13 31.32 0.19 -3.87 16 26 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.04 1.87 8.05 -2.38 -0.02 1.85 16 28 H 0.03 1.73 7.55 -2.38 -0.02 1.71 16 29 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 31 H 0.41 9.06 8.32 -92.71 -0.77 8.29 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.29 7.46 -2.39 -0.02 1.28 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 1.68 8.04 -2.38 -0.02 1.66 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 2.49 7.14 -2.39 -0.02 2.48 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.48 320.05 3.07 -63.40 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.27 Total: 14.25 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 2.78 Total: -18.17 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.94 Total: -72.90 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -66.48 3.07 -63.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522059686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.127 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds