Wall clock time and date at job start Mon Mar 30 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48502 * 109.46782 * 240.00191 * 3 2 1 5 5 H 1.48500 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47025 * 119.99941 * 3 2 1 7 7 C 1.37871 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99898 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.27968 * 46.93621 * 9 7 2 11 11 C 1.53499 * 114.20361 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98548 * 139.85518 * 11 9 7 13 13 C 1.34771 * 136.06029 * 152.84399 * 12 11 9 14 14 O 1.21276 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99899 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.05100 * 355.16913 * 15 13 12 17 17 C 1.54388 * 110.11184 * 233.65698 * 15 13 12 18 18 C 1.54924 * 104.22074 * 217.18343 * 17 15 13 19 19 C 1.54983 * 102.82083 * 37.72144 * 18 17 15 20 20 C 1.53483 * 110.06995 * 116.66214 * 15 13 12 21 21 C 1.52571 * 121.04995 * 263.50176 * 20 15 13 22 22 C 1.52548 * 121.08594 * 335.21772 * 20 15 13 23 23 C 1.47069 * 87.88192 * 333.10160 * 12 11 9 24 24 H 0.97002 * 120.00553 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00078 * 313.06447 * 10 9 7 26 26 H 1.08992 * 113.47159 * 25.07501 * 11 9 7 27 27 H 1.09003 * 113.52173 * 254.63998 * 11 9 7 28 28 H 1.09002 * 110.48209 * 335.86773 * 17 15 13 29 29 H 1.08994 * 110.48208 * 98.36587 * 17 15 13 30 30 H 1.08995 * 110.74436 * 279.38939 * 18 17 15 31 31 H 1.08999 * 110.74569 * 156.05407 * 18 17 15 32 32 H 1.09004 * 110.51357 * 203.78572 * 19 18 17 33 33 H 1.09002 * 110.51533 * 81.07904 * 19 18 17 34 34 H 1.09001 * 117.51117 * 217.93808 * 21 20 15 35 35 H 1.08998 * 117.50979 * 3.03311 * 21 20 15 36 36 H 1.09004 * 117.50810 * 357.03151 * 22 20 15 37 37 H 1.08998 * 117.51045 * 142.07978 * 22 20 15 38 38 H 1.09004 * 113.47065 * 141.67966 * 23 12 11 39 39 H 1.09000 * 113.46621 * 272.11924 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1921 -2.5407 -0.9569 11 6 2.1489 -3.7441 0.0016 12 7 1.2081 -4.3589 0.9502 13 6 0.8322 -5.6133 1.2689 14 8 1.3276 -6.5593 0.6941 15 6 -0.2038 -5.8403 2.3396 16 1 -0.4747 -4.8924 2.8045 17 6 0.3391 -6.8169 3.4050 18 6 -0.8910 -7.6725 3.7990 19 6 -1.6281 -7.8575 2.4483 20 6 -1.4482 -6.5057 1.7358 21 6 -2.6584 -5.6768 1.3162 22 6 -1.7842 -6.3512 0.2558 23 6 0.8533 -3.0022 1.3934 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3716 -1.7551 -0.9546 26 1 3.1376 -3.5664 0.4244 27 1 2.1879 -4.2522 -0.9620 28 1 1.1218 -7.4465 2.9818 29 1 0.7169 -6.2685 4.2678 30 1 -1.5197 -7.1392 4.5120 31 1 -0.5782 -8.6352 4.2032 32 1 -2.6854 -8.0636 2.6153 33 1 -1.1688 -8.6586 1.8691 34 1 -3.6462 -6.1002 1.4981 35 1 -2.5853 -4.5937 1.4144 36 1 -1.1361 -5.7117 -0.3435 37 1 -2.1964 -7.2184 -0.2600 38 1 -0.2078 -2.8801 1.6106 39 1 1.4935 -2.6248 2.1908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529068447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:58 Heat of formation + Delta-G solvation = -32.534092 kcal Electronic energy + Delta-G solvation = -20998.421433 eV Core-core repulsion = 17907.618447 eV Total energy + Delta-G solvation = -3090.802985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15245 -38.66635 -36.77611 -34.02787 -33.94237 -32.19683 -29.87396 -28.02248 -25.83688 -25.13413 -24.90897 -22.23331 -21.13720 -20.24192 -19.02812 -17.79771 -17.33359 -16.42038 -15.57040 -15.45094 -15.11628 -14.70418 -14.33795 -14.09980 -13.70761 -13.25146 -12.78557 -12.58900 -12.44209 -12.24663 -11.96408 -11.56174 -11.39831 -11.21799 -11.05932 -11.03463 -10.98761 -10.72879 -10.57125 -10.49295 -10.25901 -10.02722 -9.79909 -9.42692 -9.02365 -8.76287 -8.37320 -7.81308 -6.41186 -4.51671 3.15154 3.21106 3.21577 3.24464 3.53682 4.04382 4.17744 4.49063 4.75369 4.81474 4.98055 5.04284 5.22678 5.29495 5.34435 5.58532 5.60965 5.70291 5.84815 5.88184 5.90034 5.94163 5.99543 6.05602 6.13525 6.21288 6.25279 6.31419 6.38946 6.42316 6.46805 6.52542 6.66818 6.71605 7.11305 7.61899 7.80250 8.50791 8.57593 8.85273 9.19862 9.48637 10.65357 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031759 B = 0.005253 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.422009 B = 5329.228979 C = 5517.973966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.105 3.895 12 N -0.635 5.635 13 C 0.544 3.456 14 O -0.561 6.561 15 C -0.071 4.071 16 H 0.086 0.914 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.084 4.084 20 C -0.115 4.115 21 C -0.167 4.167 22 C -0.160 4.160 23 C 0.072 3.928 24 H 0.274 0.726 25 H 0.393 0.607 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -8.018 6.682 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.018 4.018 12 N -0.368 5.368 13 C 0.334 3.666 14 O -0.441 6.441 15 C -0.092 4.092 16 H 0.104 0.896 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.204 4.204 22 C -0.197 4.197 23 C -0.051 4.051 24 H 0.085 0.915 25 H 0.250 0.750 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.577 -9.166 6.298 11.682 hybrid contribution 0.149 1.587 0.226 1.610 sum -3.428 -7.579 6.524 10.571 Atomic orbital electron populations 1.69252 1.06200 1.28304 1.50159 1.25069 0.95015 0.99891 0.93000 0.86373 0.79495 0.81561 0.79010 1.19818 1.20970 1.19875 1.21399 0.93887 0.89811 1.52117 0.91027 1.19474 0.85394 0.91000 0.84203 1.86042 1.45117 1.48317 1.58956 1.23311 0.93835 0.92296 0.92326 1.49817 1.41998 1.04822 1.40175 1.19893 0.82547 0.80804 0.83370 1.90608 1.57869 1.40875 1.54711 1.21308 0.93051 0.99948 0.94903 0.89601 1.22307 0.98316 0.97089 0.96902 1.22430 0.96574 0.99608 0.96938 1.21851 0.99923 0.94978 0.95410 1.21436 0.95140 0.97170 0.97810 1.23042 0.94308 0.99339 1.03680 1.22920 1.02974 1.02750 0.91097 1.24136 1.00226 0.78115 1.02636 0.91526 0.75024 0.89880 0.91709 0.90393 0.91334 0.91367 0.91369 0.91684 0.91016 0.88856 0.88518 0.88284 0.88972 0.91923 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.55 11.01 55.43 0.61 -21.94 16 2 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 3 Si 0.91 19.25 29.54 -169.99 -5.02 14.23 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.53 -13.30 8.70 -34.44 -0.30 -13.60 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.24 5.78 1.57 -91.39 -0.14 5.63 16 10 O -0.57 -14.69 13.53 -35.23 -0.48 -15.16 16 11 C 0.10 2.32 8.03 -8.51 -0.07 2.26 16 12 N -0.64 -13.62 3.69 -185.38 -0.68 -14.31 16 13 C 0.54 11.24 5.52 -10.98 -0.06 11.18 16 14 O -0.56 -13.09 17.15 5.56 0.10 -12.99 16 15 C -0.07 -1.17 3.15 -90.79 -0.29 -1.46 16 16 H 0.09 1.40 7.44 -51.93 -0.39 1.02 16 17 C -0.11 -1.51 6.33 -24.99 -0.16 -1.67 16 18 C -0.12 -1.35 6.91 -24.67 -0.17 -1.52 16 19 C -0.08 -1.06 6.58 -25.23 -0.17 -1.23 16 20 C -0.12 -1.75 2.22 -154.26 -0.34 -2.09 16 21 C -0.17 -2.39 10.24 -26.90 -0.28 -2.67 16 22 C -0.16 -2.63 9.61 -26.91 -0.26 -2.89 16 23 C 0.07 1.55 7.40 -8.65 -0.06 1.49 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.39 10.21 6.32 45.56 0.29 10.50 16 26 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 27 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.21 7.41 -51.93 -0.38 0.82 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.10 1.97 7.30 -51.93 -0.38 1.59 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 39 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -27.68 319.97 -8.51 -36.19 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.47 Total: 14.04 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.39 Total: -4.87 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.07 Total: -36.25 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.38 Total: -28.15 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.68 -8.51 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529068447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.656 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds