Wall clock time and date at job start Mon Mar 30 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99766 * 2 1 4 4 H 1.48502 * 109.46782 * 240.00191 * 3 2 1 5 5 H 1.48500 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47025 * 119.99941 * 3 2 1 7 7 C 1.37871 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99898 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.27968 * 46.93621 * 9 7 2 11 11 C 1.53499 * 114.20361 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98548 * 139.85518 * 11 9 7 13 13 C 1.34771 * 136.06029 * 152.84399 * 12 11 9 14 14 O 1.21276 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99899 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.05100 * 355.16913 * 15 13 12 17 17 C 1.54388 * 110.11184 * 233.65698 * 15 13 12 18 18 C 1.54924 * 104.22074 * 217.18343 * 17 15 13 19 19 C 1.54983 * 102.82083 * 37.72144 * 18 17 15 20 20 C 1.53483 * 110.06995 * 116.66214 * 15 13 12 21 21 C 1.52571 * 121.04995 * 263.50176 * 20 15 13 22 22 C 1.52548 * 121.08594 * 335.21772 * 20 15 13 23 23 C 1.47069 * 87.88192 * 333.10160 * 12 11 9 24 24 H 0.97002 * 120.00553 * 0.02562 * 1 2 3 25 25 H 0.96695 * 114.00078 * 313.06447 * 10 9 7 26 26 H 1.08992 * 113.47159 * 25.07501 * 11 9 7 27 27 H 1.09003 * 113.52173 * 254.63998 * 11 9 7 28 28 H 1.09002 * 110.48209 * 335.86773 * 17 15 13 29 29 H 1.08994 * 110.48208 * 98.36587 * 17 15 13 30 30 H 1.08995 * 110.74436 * 279.38939 * 18 17 15 31 31 H 1.08999 * 110.74569 * 156.05407 * 18 17 15 32 32 H 1.09004 * 110.51357 * 203.78572 * 19 18 17 33 33 H 1.09002 * 110.51533 * 81.07904 * 19 18 17 34 34 H 1.09001 * 117.51117 * 217.93808 * 21 20 15 35 35 H 1.08998 * 117.50979 * 3.03311 * 21 20 15 36 36 H 1.09004 * 117.50810 * 357.03151 * 22 20 15 37 37 H 1.08998 * 117.51045 * 142.07978 * 22 20 15 38 38 H 1.09004 * 113.47065 * 141.67966 * 23 12 11 39 39 H 1.09000 * 113.46621 * 272.11924 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1921 -2.5407 -0.9569 11 6 2.1489 -3.7441 0.0016 12 7 1.2081 -4.3589 0.9502 13 6 0.8322 -5.6133 1.2689 14 8 1.3276 -6.5593 0.6941 15 6 -0.2038 -5.8403 2.3396 16 1 -0.4747 -4.8924 2.8045 17 6 0.3391 -6.8169 3.4050 18 6 -0.8910 -7.6725 3.7990 19 6 -1.6281 -7.8575 2.4483 20 6 -1.4482 -6.5057 1.7358 21 6 -2.6584 -5.6768 1.3162 22 6 -1.7842 -6.3512 0.2558 23 6 0.8533 -3.0022 1.3934 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3716 -1.7551 -0.9546 26 1 3.1376 -3.5664 0.4244 27 1 2.1879 -4.2522 -0.9620 28 1 1.1218 -7.4465 2.9818 29 1 0.7169 -6.2685 4.2678 30 1 -1.5197 -7.1392 4.5120 31 1 -0.5782 -8.6352 4.2032 32 1 -2.6854 -8.0636 2.6153 33 1 -1.1688 -8.6586 1.8691 34 1 -3.6462 -6.1002 1.4981 35 1 -2.5853 -4.5937 1.4144 36 1 -1.1361 -5.7117 -0.3435 37 1 -2.1964 -7.2184 -0.2600 38 1 -0.2078 -2.8801 1.6106 39 1 1.4935 -2.6248 2.1908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529068447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:57 Heat of formation + Delta-G solvation = -49.856017 kcal Electronic energy + Delta-G solvation = -20999.172568 eV Core-core repulsion = 17907.618447 eV Total energy + Delta-G solvation = -3091.554120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69296 -40.20942 -38.40529 -35.90480 -35.10644 -34.14189 -31.36713 -29.55994 -27.30313 -26.90404 -26.39289 -23.47695 -22.55408 -21.57108 -20.57531 -19.52942 -18.99541 -18.07576 -17.24186 -16.83439 -16.69763 -16.09101 -15.97796 -15.71750 -15.17865 -14.77375 -14.41872 -14.10870 -13.93432 -13.57861 -13.50231 -13.42463 -12.85710 -12.77363 -12.56467 -12.45381 -12.23536 -12.20251 -12.00584 -11.85608 -11.64168 -11.38764 -11.19948 -11.01287 -10.71921 -10.52430 -10.21117 -9.60452 -8.28829 -6.46532 1.47815 1.49711 1.57047 1.61082 1.92743 2.39662 2.76247 2.93253 3.32502 3.54694 3.62613 3.77637 3.88275 3.99130 4.12429 4.20299 4.25910 4.40093 4.44900 4.56757 4.65115 4.69379 4.74101 4.75893 4.83573 4.86837 4.88707 4.95369 5.04805 5.13819 5.14742 5.17735 5.22675 5.26003 5.43969 5.70814 5.89013 6.59103 6.87271 7.16082 7.27943 7.46832 8.77236 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031759 B = 0.005253 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.422009 B = 5329.228979 C = 5517.973966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.034 3.966 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.222 3.778 10 O -0.586 6.586 11 C 0.103 3.897 12 N -0.639 5.639 13 C 0.539 3.461 14 O -0.593 6.593 15 C -0.072 4.072 16 H 0.088 0.912 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.082 4.082 20 C -0.118 4.118 21 C -0.147 4.147 22 C -0.183 4.183 23 C 0.088 3.912 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.102 0.898 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -8.244 8.718 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.181 3.819 10 O -0.399 6.399 11 C -0.020 4.020 12 N -0.372 5.372 13 C 0.331 3.669 14 O -0.475 6.475 15 C -0.093 4.093 16 H 0.106 0.894 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.183 4.183 22 C -0.220 4.220 23 C -0.035 4.035 24 H 0.087 0.913 25 H 0.245 0.755 26 H 0.120 0.880 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.145 0.855 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.334 -9.399 8.346 13.296 hybrid contribution 0.403 1.651 -0.488 1.768 sum -3.931 -7.748 7.857 11.714 Atomic orbital electron populations 1.69316 1.07203 1.29093 1.50175 1.25769 0.95761 1.02690 0.92456 0.85401 0.78259 0.77791 0.78959 1.20013 1.20673 1.19086 1.21621 0.94174 0.90522 1.52942 0.90790 1.19732 0.85413 0.91594 0.85160 1.86034 1.45679 1.48155 1.60036 1.23329 0.94749 0.91705 0.92211 1.49910 1.41933 1.05303 1.40016 1.20746 0.82664 0.79865 0.83672 1.90578 1.59149 1.41649 1.56153 1.21465 0.92492 1.01145 0.94241 0.89357 1.22357 0.99139 0.96743 0.96339 1.22447 0.95113 1.00308 0.96609 1.21903 1.01808 0.92698 0.95479 1.21657 0.94782 0.98839 0.96627 1.23089 0.95457 0.98565 1.01226 1.22819 1.04075 1.03320 0.91815 1.23920 1.00202 0.77824 1.01542 0.91276 0.75521 0.88044 0.93346 0.92359 0.89624 0.89395 0.89267 0.88955 0.91874 0.85486 0.89933 0.92846 0.87419 0.92234 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.08 11.01 21.44 0.24 -45.85 16 2 C 0.03 1.65 5.39 84.65 0.46 2.11 16 3 Si 0.97 38.95 29.54 68.60 2.03 40.98 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.55 -27.70 8.70 25.60 0.22 -27.48 16 8 H 0.07 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.22 10.85 1.57 -11.29 -0.02 10.84 16 10 O -0.59 -31.20 13.53 -148.98 -2.02 -33.21 16 11 C 0.10 4.68 8.03 83.18 0.67 5.35 16 12 N -0.64 -27.94 3.69 -859.28 -3.17 -31.11 16 13 C 0.54 22.63 5.52 87.66 0.48 23.12 16 14 O -0.59 -28.48 17.15 -3.02 -0.05 -28.53 16 15 C -0.07 -2.34 3.15 -10.90 -0.03 -2.37 16 16 H 0.09 2.79 7.44 -2.39 -0.02 2.77 16 17 C -0.11 -2.81 6.33 31.72 0.20 -2.60 16 18 C -0.11 -2.06 6.91 31.93 0.22 -1.84 16 19 C -0.08 -1.81 6.58 31.57 0.21 -1.60 16 20 C -0.12 -3.44 2.22 -52.02 -0.12 -3.56 16 21 C -0.15 -3.97 10.24 30.48 0.31 -3.66 16 22 C -0.18 -6.05 9.61 30.48 0.29 -5.76 16 23 C 0.09 3.81 7.40 83.09 0.62 4.43 16 24 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 25 H 0.39 20.87 6.32 -74.06 -0.47 20.40 16 26 H 0.10 4.17 8.10 -2.39 -0.02 4.15 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.75 7.41 -2.39 -0.02 1.74 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.57 8.11 -2.38 -0.02 1.55 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.05 2.25 7.30 -2.39 -0.02 2.23 16 37 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 2.59 8.05 -2.39 -0.02 2.57 16 39 H 0.09 3.75 8.10 -2.39 -0.02 3.73 16 Total: -1.00 -60.52 319.97 1.11 -59.41 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: 0.57 Total: 41.34 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 3.51 Total: -3.03 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.94 Total: -76.96 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.07 Total: -61.74 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -60.52 1.11 -59.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529068447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.555 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds