Wall clock time and date at job start Mon Mar 30 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47158 * 239.99892 * 3 2 1 5 5 H 1.48502 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47039 * 119.99748 * 3 2 1 7 7 C 1.37872 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99984 * 359.97438 * 7 2 1 10 10 O 1.42899 * 113.28414 * 313.07317 * 9 7 2 11 11 C 1.53497 * 114.20670 * 179.97438 * 9 7 2 12 12 N 1.47063 * 87.99011 * 220.14945 * 11 9 7 13 13 C 1.34773 * 136.06368 * 207.08878 * 12 11 9 14 14 O 1.21291 * 119.99709 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00230 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.76398 * 60.45742 * 15 13 12 17 17 C 1.53300 * 109.61657 * 299.99573 * 15 13 12 18 18 C 1.52876 * 108.58593 * 165.83073 * 17 15 13 19 19 C 1.52071 * 110.51328 * 54.89248 * 18 17 15 20 20 H 1.09000 * 114.63404 * 193.15316 * 19 18 17 21 21 C 1.52299 * 119.84364 * 49.55236 * 19 18 17 22 22 C 1.52070 * 120.02319 * 338.29357 * 19 18 17 23 23 H 1.08999 * 117.25352 * 216.66599 * 22 19 18 24 24 C 1.52711 * 120.51987 * 5.29460 * 22 19 18 25 25 C 1.47073 * 87.88365 * 27.34403 * 12 11 9 26 26 H 0.96995 * 119.99765 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00217 * 46.93080 * 10 9 7 28 28 H 1.09003 * 113.46261 * 105.37180 * 11 9 7 29 29 H 1.08993 * 113.52399 * 334.94719 * 11 9 7 30 30 H 1.08998 * 109.61258 * 46.10083 * 17 15 13 31 31 H 1.09000 * 109.61526 * 285.55936 * 17 15 13 32 32 H 1.08996 * 109.26238 * 175.15779 * 18 17 15 33 33 H 1.09000 * 109.26941 * 294.61735 * 18 17 15 34 34 H 1.08997 * 117.53567 * 357.55222 * 21 19 18 35 35 H 1.08999 * 117.54288 * 142.80365 * 21 19 18 36 36 H 1.09007 * 109.35442 * 98.73551 * 24 22 19 37 37 H 1.08997 * 109.35619 * 218.44985 * 24 22 19 38 38 H 1.08995 * 113.46614 * 87.43508 * 25 12 11 39 39 H 1.09001 * 113.46701 * 217.87552 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1928 -2.5394 0.9610 11 6 2.1489 -3.7441 0.0016 12 7 1.2068 -4.3598 -0.9451 13 6 0.8311 -5.6144 -1.2630 14 8 1.3284 -6.5601 -0.6889 15 6 -0.2059 -5.8425 -2.3324 16 1 0.1463 -5.4353 -3.2801 17 6 -1.5170 -5.1561 -1.9326 18 6 -2.4271 -5.0916 -3.1592 19 6 -2.6243 -6.4790 -3.7499 20 1 -3.0695 -6.4901 -4.7448 21 6 -3.0228 -7.6380 -2.8458 22 6 -1.6157 -7.5796 -3.4604 23 1 -1.3951 -8.2791 -4.2667 24 6 -0.4669 -7.3413 -2.4830 25 6 0.8596 -3.0039 -1.3969 26 1 -0.4849 0.8400 -0.0004 27 1 -0.3709 -1.7538 0.9581 28 1 2.1885 -4.2508 0.9659 29 1 3.1373 -3.5677 -0.4225 30 1 -1.3083 -4.1466 -1.5782 31 1 -2.0050 -5.7298 -1.1446 32 1 -3.3950 -4.6838 -2.8679 33 1 -1.9749 -4.4424 -3.9089 34 1 -3.1154 -7.4359 -1.7787 35 1 -3.7182 -8.3749 -3.2478 36 1 -0.7258 -7.7624 -1.5115 37 1 0.4337 -7.8268 -2.8587 38 1 1.5078 -2.6314 -2.1900 39 1 -0.1993 -2.8800 -1.6241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582295026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:43 Heat of formation + Delta-G solvation = -35.043370 kcal Electronic energy + Delta-G solvation = -20860.233877 eV Core-core repulsion = 17769.322081 eV Total energy + Delta-G solvation = -3090.911796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20716 -38.91352 -37.21526 -34.03015 -33.04474 -32.19921 -30.68154 -28.70613 -25.79094 -25.16905 -24.33422 -23.02231 -21.10131 -20.10006 -18.57807 -18.04140 -17.45873 -16.32850 -16.11086 -15.38382 -14.93466 -14.75603 -14.23038 -13.89805 -13.74221 -13.44475 -13.00341 -12.76347 -12.43555 -12.28302 -11.95194 -11.95184 -11.56524 -11.32427 -11.15849 -11.07750 -11.00106 -10.85419 -10.57014 -10.37990 -10.14844 -9.72378 -9.61888 -9.52255 -9.09844 -8.77328 -8.36137 -7.81878 -6.41581 -4.51803 3.15067 3.21076 3.22288 3.25372 3.56037 3.77630 4.16984 4.62537 4.77995 4.82032 4.84264 5.00507 5.15709 5.19103 5.30136 5.52745 5.58082 5.63333 5.72271 5.76577 5.80664 5.95783 6.02698 6.09071 6.17281 6.22586 6.28151 6.29557 6.35635 6.46438 6.48733 6.54772 6.68927 6.77332 7.10820 7.61690 7.79901 8.50571 8.56766 8.81592 9.19634 9.48110 10.65011 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.005136 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.344388 B = 5450.038073 C = 5972.584888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.105 3.895 12 N -0.633 5.633 13 C 0.538 3.462 14 O -0.567 6.567 15 C -0.096 4.096 16 H 0.093 0.907 17 C -0.119 4.119 18 C -0.086 4.086 19 C -0.139 4.139 20 H 0.096 0.904 21 C -0.185 4.185 22 C -0.146 4.146 23 H 0.101 0.899 24 C -0.068 4.068 25 C 0.069 3.931 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 -6.943 -7.597 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.090 0.910 9 C 0.199 3.801 10 O -0.384 6.384 11 C -0.018 4.018 12 N -0.366 5.366 13 C 0.328 3.672 14 O -0.447 6.447 15 C -0.117 4.117 16 H 0.111 0.889 17 C -0.157 4.157 18 C -0.123 4.123 19 C -0.157 4.157 20 H 0.114 0.886 21 C -0.222 4.222 22 C -0.165 4.165 23 H 0.119 0.881 24 C -0.106 4.106 25 C -0.054 4.054 26 H 0.085 0.915 27 H 0.250 0.750 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.517 -8.099 -7.209 11.746 hybrid contribution 0.137 1.380 -0.373 1.436 sum -4.380 -6.719 -7.582 11.037 Atomic orbital electron populations 1.69254 1.06185 1.28303 1.50188 1.25065 0.95019 0.99873 0.92998 0.86375 0.79500 0.81572 0.79008 1.19882 1.20973 1.19829 1.21408 0.93903 0.89837 1.52085 0.91030 1.19566 0.85385 0.90960 0.84190 1.86048 1.45199 1.48348 1.58765 1.23315 0.93789 0.92279 0.92380 1.49715 1.42115 1.04815 1.39931 1.20073 0.82851 0.80854 0.83429 1.90622 1.58215 1.40920 1.54964 1.21212 0.94868 0.97625 0.97999 0.88938 1.21731 0.93849 1.02250 0.97835 1.20849 0.99889 0.94397 0.97214 1.21848 1.02870 0.91236 0.99792 0.88597 1.23138 0.98162 1.01253 0.99607 1.22237 0.90844 1.02089 1.01298 0.88128 1.20835 0.96774 0.94115 0.98830 1.24344 1.00476 0.78029 1.02574 0.91524 0.75021 0.91683 0.89855 0.89646 0.91558 0.91219 0.91256 0.88645 0.89244 0.90811 0.91244 0.90245 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.32 11.01 55.43 0.61 -21.70 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.53 -13.19 8.70 -34.44 -0.30 -13.49 16 8 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.24 5.71 1.58 -91.12 -0.14 5.56 16 10 O -0.57 -14.55 13.55 -35.23 -0.48 -15.02 16 11 C 0.10 2.30 8.02 -8.51 -0.07 2.24 16 12 N -0.63 -13.38 3.59 -185.03 -0.66 -14.04 16 13 C 0.54 11.02 7.41 -10.99 -0.08 10.94 16 14 O -0.57 -13.22 16.70 5.55 0.09 -13.13 16 15 C -0.10 -1.54 2.38 -91.68 -0.22 -1.76 16 16 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 17 C -0.12 -1.81 4.99 -26.64 -0.13 -1.94 16 18 C -0.09 -1.06 5.93 -27.27 -0.16 -1.22 16 19 C -0.14 -1.57 6.00 -91.92 -0.55 -2.12 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 21 C -0.18 -2.05 9.66 -26.75 -0.26 -2.31 16 22 C -0.15 -1.73 6.19 -90.90 -0.56 -2.30 16 23 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 24 C -0.07 -0.98 4.48 -26.94 -0.12 -1.10 16 25 C 0.07 1.44 7.39 -8.36 -0.06 1.38 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.39 10.10 6.32 45.56 0.29 10.39 16 28 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 30 H 0.09 1.47 5.04 -51.93 -0.26 1.21 16 31 H 0.07 1.03 7.11 -51.93 -0.37 0.66 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.14 7.26 -51.93 -0.38 0.76 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 39 H 0.07 1.42 5.86 -51.93 -0.30 1.12 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -27.30 310.66 -8.73 -36.03 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -5.20 Total: 13.52 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.76 Total: -4.43 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.05 Total: -35.75 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.38 Total: -28.15 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.30 -8.73 -36.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582295026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.985 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds