Wall clock time and date at job start Mon Mar 30 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47158 * 239.99892 * 3 2 1 5 5 H 1.48502 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47039 * 119.99748 * 3 2 1 7 7 C 1.37872 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99984 * 359.97438 * 7 2 1 10 10 O 1.42899 * 113.28414 * 313.07317 * 9 7 2 11 11 C 1.53497 * 114.20670 * 179.97438 * 9 7 2 12 12 N 1.47063 * 87.99011 * 220.14945 * 11 9 7 13 13 C 1.34773 * 136.06368 * 207.08878 * 12 11 9 14 14 O 1.21291 * 119.99709 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00230 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.76398 * 60.45742 * 15 13 12 17 17 C 1.53300 * 109.61657 * 299.99573 * 15 13 12 18 18 C 1.52876 * 108.58593 * 165.83073 * 17 15 13 19 19 C 1.52071 * 110.51328 * 54.89248 * 18 17 15 20 20 H 1.09000 * 114.63404 * 193.15316 * 19 18 17 21 21 C 1.52299 * 119.84364 * 49.55236 * 19 18 17 22 22 C 1.52070 * 120.02319 * 338.29357 * 19 18 17 23 23 H 1.08999 * 117.25352 * 216.66599 * 22 19 18 24 24 C 1.52711 * 120.51987 * 5.29460 * 22 19 18 25 25 C 1.47073 * 87.88365 * 27.34403 * 12 11 9 26 26 H 0.96995 * 119.99765 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00217 * 46.93080 * 10 9 7 28 28 H 1.09003 * 113.46261 * 105.37180 * 11 9 7 29 29 H 1.08993 * 113.52399 * 334.94719 * 11 9 7 30 30 H 1.08998 * 109.61258 * 46.10083 * 17 15 13 31 31 H 1.09000 * 109.61526 * 285.55936 * 17 15 13 32 32 H 1.08996 * 109.26238 * 175.15779 * 18 17 15 33 33 H 1.09000 * 109.26941 * 294.61735 * 18 17 15 34 34 H 1.08997 * 117.53567 * 357.55222 * 21 19 18 35 35 H 1.08999 * 117.54288 * 142.80365 * 21 19 18 36 36 H 1.09007 * 109.35442 * 98.73551 * 24 22 19 37 37 H 1.08997 * 109.35619 * 218.44985 * 24 22 19 38 38 H 1.08995 * 113.46614 * 87.43508 * 25 12 11 39 39 H 1.09001 * 113.46701 * 217.87552 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.1928 -2.5394 0.9610 11 6 2.1489 -3.7441 0.0016 12 7 1.2068 -4.3598 -0.9451 13 6 0.8311 -5.6144 -1.2630 14 8 1.3284 -6.5601 -0.6889 15 6 -0.2059 -5.8425 -2.3324 16 1 0.1463 -5.4353 -3.2801 17 6 -1.5170 -5.1561 -1.9326 18 6 -2.4271 -5.0916 -3.1592 19 6 -2.6243 -6.4790 -3.7499 20 1 -3.0695 -6.4901 -4.7448 21 6 -3.0228 -7.6380 -2.8458 22 6 -1.6157 -7.5796 -3.4604 23 1 -1.3951 -8.2791 -4.2667 24 6 -0.4669 -7.3413 -2.4830 25 6 0.8596 -3.0039 -1.3969 26 1 -0.4849 0.8400 -0.0004 27 1 -0.3709 -1.7538 0.9581 28 1 2.1885 -4.2508 0.9659 29 1 3.1373 -3.5677 -0.4225 30 1 -1.3083 -4.1466 -1.5782 31 1 -2.0050 -5.7298 -1.1446 32 1 -3.3950 -4.6838 -2.8679 33 1 -1.9749 -4.4424 -3.9089 34 1 -3.1154 -7.4359 -1.7787 35 1 -3.7182 -8.3749 -3.2478 36 1 -0.7258 -7.7624 -1.5115 37 1 0.4337 -7.8268 -2.8587 38 1 1.5078 -2.6314 -2.1900 39 1 -0.1993 -2.8800 -1.6241 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582295026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:39 Heat of formation + Delta-G solvation = -51.708658 kcal Electronic energy + Delta-G solvation = -20860.956538 eV Core-core repulsion = 17769.322081 eV Total energy + Delta-G solvation = -3091.634457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.68057 -40.28506 -38.85684 -35.90910 -34.26489 -34.11489 -31.78662 -30.43812 -27.48916 -26.89211 -25.58094 -24.29108 -22.06331 -21.79629 -20.03283 -19.36542 -19.27156 -17.82676 -17.48655 -17.05053 -16.51507 -16.35579 -15.96128 -15.26848 -14.87058 -14.77844 -14.55379 -14.39491 -13.85136 -13.71123 -13.61381 -13.38712 -13.11761 -12.77428 -12.75588 -12.40628 -12.26587 -12.21299 -12.15751 -11.97597 -11.50104 -11.29742 -10.85760 -10.66820 -10.59746 -10.56008 -10.17657 -9.58274 -8.26853 -6.43908 1.49141 1.51244 1.58108 1.61270 1.96320 2.41435 2.83949 2.95037 3.38320 3.69891 3.74210 3.76443 3.94255 4.02170 4.13266 4.15947 4.21837 4.38466 4.46417 4.52663 4.62030 4.64140 4.68714 4.80202 4.85095 4.94841 4.96480 4.99496 5.12050 5.22606 5.24580 5.26071 5.33462 5.36858 5.38222 5.73255 5.91639 6.61408 6.88602 7.13477 7.30164 7.49733 8.79162 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.005136 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.344388 B = 5450.038073 C = 5972.584888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.035 3.965 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.102 3.898 12 N -0.635 5.635 13 C 0.529 3.471 14 O -0.600 6.600 15 C -0.088 4.088 16 H 0.109 0.891 17 C -0.114 4.114 18 C -0.083 4.083 19 C -0.134 4.134 20 H 0.121 0.879 21 C -0.183 4.183 22 C -0.151 4.151 23 H 0.122 0.878 24 C -0.064 4.064 25 C 0.085 3.915 26 H 0.277 0.723 27 H 0.389 0.611 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -6.720 -9.614 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.091 0.909 9 C 0.180 3.820 10 O -0.399 6.399 11 C -0.021 4.021 12 N -0.367 5.367 13 C 0.321 3.679 14 O -0.483 6.483 15 C -0.109 4.109 16 H 0.127 0.873 17 C -0.152 4.152 18 C -0.120 4.120 19 C -0.152 4.152 20 H 0.139 0.861 21 C -0.220 4.220 22 C -0.169 4.169 23 H 0.140 0.860 24 C -0.102 4.102 25 C -0.038 4.038 26 H 0.087 0.913 27 H 0.245 0.755 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.107 -7.881 -9.236 13.171 hybrid contribution 0.333 1.288 0.342 1.373 sum -4.774 -6.593 -8.894 12.057 Atomic orbital electron populations 1.69314 1.07116 1.29056 1.50196 1.25736 0.95752 1.02556 0.92512 0.85429 0.78283 0.77960 0.78902 1.19144 1.20705 1.20117 1.21630 0.94166 0.90599 1.52882 0.90875 1.19823 0.85414 0.91465 0.85314 1.86033 1.45749 1.48209 1.59874 1.23352 0.94727 0.91715 0.92292 1.49785 1.41929 1.05286 1.39709 1.20981 0.83078 0.79982 0.83852 1.90596 1.59512 1.41762 1.56443 1.21259 0.93718 0.99102 0.96789 0.87260 1.21656 0.93973 1.00400 0.99159 1.20841 0.99556 0.95705 0.95884 1.21914 1.02279 0.90153 1.00823 0.86093 1.23192 0.97969 1.01830 0.99008 1.22212 0.90006 1.03297 1.01364 0.86039 1.20778 0.98061 0.92599 0.98737 1.24141 1.00901 0.77474 1.01262 0.91285 0.75474 0.93271 0.88033 0.91916 0.92646 0.90291 0.90285 0.90110 0.87092 0.92921 0.91457 0.88981 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.24 11.01 21.45 0.24 -45.01 16 2 C 0.04 1.69 5.39 84.65 0.46 2.15 16 3 Si 0.97 38.53 29.54 68.60 2.03 40.56 16 4 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.55 -27.30 8.70 25.60 0.22 -27.08 16 8 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.22 10.57 1.58 -11.12 -0.02 10.55 16 10 O -0.59 -30.55 13.55 -148.98 -2.02 -32.57 16 11 C 0.10 4.54 8.02 83.18 0.67 5.21 16 12 N -0.63 -26.97 3.59 -858.18 -3.08 -30.05 16 13 C 0.53 21.84 7.41 87.66 0.65 22.49 16 14 O -0.60 -28.58 16.70 -3.06 -0.05 -28.63 16 15 C -0.09 -2.75 2.38 -11.48 -0.03 -2.78 16 16 H 0.11 3.08 8.04 -2.39 -0.02 3.06 16 17 C -0.11 -3.39 4.99 30.65 0.15 -3.24 16 18 C -0.08 -1.84 5.93 30.25 0.18 -1.66 16 19 C -0.13 -2.57 6.00 -11.64 -0.07 -2.64 16 20 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 21 C -0.18 -3.61 9.66 30.58 0.30 -3.31 16 22 C -0.15 -3.18 6.19 -10.98 -0.07 -3.25 16 23 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 24 C -0.06 -1.80 4.48 30.46 0.14 -1.66 16 25 C 0.08 3.53 7.39 83.27 0.62 4.15 16 26 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 27 H 0.39 20.45 6.32 -74.06 -0.47 19.98 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 4.09 8.10 -2.39 -0.02 4.07 16 30 H 0.06 2.16 5.04 -2.39 -0.01 2.14 16 31 H 0.05 1.74 7.11 -2.39 -0.02 1.72 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.84 7.26 -2.39 -0.02 1.82 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.69 7.85 -2.38 -0.02 1.67 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 3.59 8.10 -2.39 -0.02 3.57 16 39 H 0.07 2.95 5.86 -2.39 -0.01 2.94 16 Total: -1.00 -58.18 310.66 0.89 -57.29 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: 0.59 Total: 39.47 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 3.19 Total: -1.06 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -2.84 Total: -75.06 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -2.07 Total: -61.20 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -58.18 0.89 -57.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582295026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.579 kcal (2) G-P(sol) polarization free energy of solvation -58.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds