Wall clock time and date at job start Mon Mar 30 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46748 * 65.00172 * 12 11 10 14 14 C 1.47893 * 111.00381 * 52.60387 * 13 12 11 15 15 C 1.53992 * 107.06281 * 145.83999 * 14 13 12 16 16 F 1.39895 * 110.31199 * 239.85961 * 15 14 13 17 17 F 1.39898 * 110.39435 * 117.73267 * 15 14 13 18 18 C 1.54595 * 105.13607 * 358.77645 * 15 14 13 19 19 C 1.48541 * 110.99737 * 169.99841 * 13 12 11 20 20 H 1.09002 * 110.66441 * 318.88185 * 19 13 12 21 21 C 1.53000 * 110.66702 * 81.84291 * 19 13 12 22 22 O 1.42903 * 109.47082 * 64.99753 * 21 19 13 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 27 27 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 28 28 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 29 29 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 30 30 H 1.09001 * 109.91557 * 265.19467 * 14 13 12 31 31 H 1.09003 * 109.91713 * 26.48406 * 14 13 12 32 32 H 1.09003 * 110.72467 * 219.68428 * 18 15 14 33 33 H 1.08998 * 110.72713 * 96.40379 * 18 15 14 34 34 H 1.09002 * 109.47019 * 185.00170 * 21 19 13 35 35 H 1.09008 * 109.47243 * 305.00249 * 21 19 13 36 36 H 0.96702 * 113.99773 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4091 -5.8876 1.2551 14 6 2.5058 -5.9244 2.4256 15 6 3.2430 -6.6880 3.5414 16 9 2.5134 -7.8205 3.9185 17 9 3.4513 -5.8555 4.6462 18 6 4.5961 -7.1037 2.9200 19 6 4.3060 -7.0629 1.3987 20 1 3.8012 -7.9736 1.0761 21 6 5.5990 -6.8553 0.6076 22 8 6.3325 -5.7660 1.1712 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 0.9453 -4.9821 0.8913 27 1 0.9447 -4.9827 -0.8887 28 1 2.1822 -6.9374 -0.0887 29 1 3.3210 -5.7957 -0.8419 30 1 2.2831 -4.9094 2.7548 31 1 1.5835 -6.4444 2.1666 32 1 4.8713 -8.1108 3.2333 33 1 5.3769 -6.3901 3.1831 34 1 6.2025 -7.7619 0.6533 35 1 5.3574 -6.6316 -0.4315 36 1 7.1661 -5.5773 0.7189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590175384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:41 Heat of formation + Delta-G solvation = -191.327263 kcal Electronic energy + Delta-G solvation = -21030.637868 eV Core-core repulsion = 17378.719564 eV Total energy + Delta-G solvation = -3651.918304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.94808 -47.04688 -39.32075 -36.93520 -36.04709 -33.13836 -32.05000 -30.03996 -28.08961 -26.21390 -25.43649 -22.65377 -22.46083 -20.91905 -20.41353 -17.95892 -17.42266 -17.15006 -16.95816 -16.10935 -15.57083 -15.17899 -15.09110 -14.53586 -14.28941 -14.23726 -13.76794 -13.68205 -13.38260 -13.27962 -13.06119 -12.60889 -12.46276 -12.11760 -11.88605 -11.64436 -11.36219 -11.19519 -10.97398 -10.73618 -10.66230 -10.18738 -10.05468 -10.01905 -8.83295 -8.61499 -8.45425 -8.21277 -6.42997 -4.10966 3.45124 3.46375 3.49522 3.68028 3.71494 3.78008 4.02091 4.28634 4.44300 4.46912 4.70863 4.84763 4.90227 5.11344 5.17374 5.23144 5.34857 5.36342 5.41582 5.45343 5.53109 5.73538 5.80813 5.89077 5.91503 6.12362 6.68538 6.75610 6.89085 7.14382 7.63886 7.92790 8.21368 8.68549 8.84383 9.59412 10.97217 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.004833 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.038218 B = 5792.181936 C = 6010.115833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.079 2.921 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.592 4.592 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.369 6.369 11 C 0.058 3.942 12 C 0.050 3.950 13 N -0.477 5.477 14 C 0.002 3.998 15 C 0.274 3.726 16 F -0.200 7.200 17 F -0.189 7.189 18 C -0.149 4.149 19 C 0.059 3.941 20 H 0.072 0.928 21 C 0.096 3.904 22 O -0.553 6.553 23 H 0.266 0.734 24 H -0.007 1.007 25 H -0.007 1.007 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -18.214 2.366 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.906 3.094 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.630 4.630 8 H 0.080 0.920 9 C 0.110 3.890 10 O -0.288 6.288 11 C -0.020 4.020 12 C -0.077 4.077 13 N -0.202 5.202 14 C -0.127 4.127 15 C 0.238 3.762 16 F -0.181 7.181 17 F -0.170 7.170 18 C -0.187 4.187 19 C -0.050 4.050 20 H 0.090 0.910 21 C 0.018 3.982 22 O -0.358 6.358 23 H 0.076 0.924 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.991 -16.039 2.782 18.597 hybrid contribution -0.411 -2.658 -0.270 2.704 sum 8.580 -18.697 2.512 20.725 Atomic orbital electron populations 1.70809 1.06847 1.30313 1.46928 1.25933 0.96405 1.02699 0.93635 0.83408 0.74715 0.74493 0.76797 1.20694 1.21147 1.21235 1.21898 0.95516 0.90316 1.55317 0.92035 1.20285 0.89465 0.85337 0.93875 1.88015 1.33913 1.11954 1.94915 1.22377 0.93875 0.86518 0.99252 1.22419 0.96169 0.96444 0.92704 1.64894 1.16639 1.37890 1.00780 1.23894 0.95354 1.03114 0.90313 1.21890 0.92883 0.77961 0.83515 1.93004 1.79636 1.52675 1.92814 1.93036 1.95487 1.71961 1.56521 1.23461 0.95896 1.04544 0.94785 1.22942 0.94426 0.92935 0.94650 0.91049 1.21878 0.91157 0.89154 0.96053 1.86597 1.37642 1.52678 1.58849 0.92426 0.98918 0.98975 0.94467 0.93884 0.93700 0.89202 0.86683 0.91046 0.88865 0.86128 0.93369 0.92982 0.77742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.65 55.43 0.76 -27.67 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.08 26.01 29.90 -169.99 -5.08 20.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.59 -18.03 9.43 -34.44 -0.32 -18.35 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.19 5.14 5.00 36.01 0.18 5.32 16 10 O -0.37 -9.06 10.27 -35.23 -0.36 -9.42 16 11 C 0.06 1.05 5.81 37.16 0.22 1.27 16 12 C 0.05 0.73 5.21 -3.82 -0.02 0.71 16 13 N -0.48 -7.17 5.01 -222.63 -1.12 -8.28 16 14 C 0.00 0.03 4.95 -2.76 -0.01 0.02 16 15 C 0.27 3.78 2.63 -25.38 -0.07 3.71 16 16 F -0.20 -2.71 17.07 2.25 0.04 -2.67 16 17 F -0.19 -2.98 17.08 2.25 0.04 -2.94 16 18 C -0.15 -1.72 6.02 -24.87 -0.15 -1.87 16 19 C 0.06 0.67 2.74 -65.79 -0.18 0.49 16 20 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 21 C 0.10 0.95 6.96 37.16 0.26 1.21 16 22 O -0.55 -6.54 12.36 -35.23 -0.44 -6.97 16 23 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 24 H -0.01 -0.19 8.01 -51.93 -0.42 -0.61 16 25 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 26 H 0.04 0.66 6.45 -51.93 -0.34 0.32 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.51 7.89 -51.93 -0.41 0.10 16 29 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 30 H 0.12 2.00 8.01 -51.93 -0.42 1.58 16 31 H 0.07 0.96 7.06 -51.93 -0.37 0.59 16 32 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.12 1.55 6.98 -51.93 -0.36 1.18 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.51 7.50 -51.92 -0.39 0.12 16 36 H 0.38 2.75 9.12 45.56 0.42 3.17 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -35.08 304.80 -6.03 -41.12 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.26 Total: -1.55 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.20 Total: -7.12 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.36 Total: -35.96 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.80 Total: -16.40 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.08 Total: -5.61 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.08 -6.03 -41.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.211 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds