Wall clock time and date at job start Mon Mar 30 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46748 * 65.00172 * 12 11 10 14 14 C 1.47893 * 111.00381 * 52.60387 * 13 12 11 15 15 C 1.53992 * 107.06281 * 145.83999 * 14 13 12 16 16 F 1.39895 * 110.31199 * 239.85961 * 15 14 13 17 17 F 1.39898 * 110.39435 * 117.73267 * 15 14 13 18 18 C 1.54595 * 105.13607 * 358.77645 * 15 14 13 19 19 C 1.48541 * 110.99737 * 169.99841 * 13 12 11 20 20 H 1.09002 * 110.66441 * 318.88185 * 19 13 12 21 21 C 1.53000 * 110.66702 * 81.84291 * 19 13 12 22 22 O 1.42903 * 109.47082 * 64.99753 * 21 19 13 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 27 27 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 28 28 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 29 29 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 30 30 H 1.09001 * 109.91557 * 265.19467 * 14 13 12 31 31 H 1.09003 * 109.91713 * 26.48406 * 14 13 12 32 32 H 1.09003 * 110.72467 * 219.68428 * 18 15 14 33 33 H 1.08998 * 110.72713 * 96.40379 * 18 15 14 34 34 H 1.09002 * 109.47019 * 185.00170 * 21 19 13 35 35 H 1.09008 * 109.47243 * 305.00249 * 21 19 13 36 36 H 0.96702 * 113.99773 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4091 -5.8876 1.2551 14 6 2.5058 -5.9244 2.4256 15 6 3.2430 -6.6880 3.5414 16 9 2.5134 -7.8205 3.9185 17 9 3.4513 -5.8555 4.6462 18 6 4.5961 -7.1037 2.9200 19 6 4.3060 -7.0629 1.3987 20 1 3.8012 -7.9736 1.0761 21 6 5.5990 -6.8553 0.6076 22 8 6.3325 -5.7660 1.1712 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 0.9453 -4.9821 0.8913 27 1 0.9447 -4.9827 -0.8887 28 1 2.1822 -6.9374 -0.0887 29 1 3.3210 -5.7957 -0.8419 30 1 2.2831 -4.9094 2.7548 31 1 1.5835 -6.4444 2.1666 32 1 4.8713 -8.1108 3.2333 33 1 5.3769 -6.3901 3.1831 34 1 6.2025 -7.7619 0.6533 35 1 5.3574 -6.6316 -0.4315 36 1 7.1661 -5.5773 0.7189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590175384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:41 Heat of formation + Delta-G solvation = -219.605012 kcal Electronic energy + Delta-G solvation = -21031.864083 eV Core-core repulsion = 17378.719564 eV Total energy + Delta-G solvation = -3653.144519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.128 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.06728 -48.18312 -40.38508 -38.58150 -37.07345 -35.28090 -33.35048 -31.01700 -29.63820 -28.09589 -26.45122 -24.74639 -23.82891 -21.96089 -21.48249 -19.21108 -18.95046 -18.38231 -18.21072 -17.65422 -16.84881 -16.59903 -16.17291 -15.80903 -15.67220 -15.59423 -15.31060 -15.02949 -14.52927 -14.46868 -14.41465 -14.01164 -13.85067 -13.53617 -13.44546 -12.88238 -12.83245 -12.58524 -12.44699 -12.12802 -11.91960 -11.80572 -11.71117 -10.87066 -10.85052 -10.77439 -10.34317 -9.50780 -8.84181 -6.54529 1.52053 1.61278 1.82538 2.36656 2.49365 2.70185 2.76851 3.02832 3.04841 3.11295 3.33931 3.56901 3.89554 3.93621 4.01222 4.08706 4.28671 4.37621 4.40918 4.46475 4.48416 4.53305 4.61618 4.63561 4.74064 4.84233 4.92883 5.00451 5.62238 5.67813 5.84392 5.94571 6.33249 6.67972 7.05157 7.26074 8.56956 Molecular weight = 265.13amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.004833 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.038218 B = 5792.181936 C = 6010.115833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.029 4.029 3 Si 1.127 2.873 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.621 4.621 8 H 0.051 0.949 9 C 0.197 3.803 10 O -0.388 6.388 11 C 0.046 3.954 12 C 0.059 3.941 13 N -0.508 5.508 14 C 0.003 3.997 15 C 0.272 3.728 16 F -0.197 7.197 17 F -0.206 7.206 18 C -0.140 4.140 19 C 0.058 3.942 20 H 0.101 0.899 21 C 0.094 3.906 22 O -0.584 6.584 23 H 0.255 0.745 24 H -0.024 1.024 25 H -0.017 1.017 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 -19.567 1.823 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.226 4.226 3 Si 0.946 3.054 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.659 4.659 8 H 0.070 0.930 9 C 0.121 3.879 10 O -0.307 6.307 11 C -0.031 4.031 12 C -0.068 4.068 13 N -0.234 5.234 14 C -0.127 4.127 15 C 0.235 3.765 16 F -0.178 7.178 17 F -0.187 7.187 18 C -0.178 4.178 19 C -0.050 4.050 20 H 0.119 0.881 21 C 0.016 3.984 22 O -0.392 6.392 23 H 0.064 0.936 24 H -0.006 1.006 25 H 0.000 1.000 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 10.332 -17.440 2.229 20.393 hybrid contribution -0.851 -2.348 -0.095 2.499 sum 9.481 -19.789 2.134 22.046 Atomic orbital electron populations 1.70934 1.07707 1.29722 1.48138 1.27601 0.96466 1.06567 0.91977 0.82839 0.74080 0.70231 0.78282 1.19964 1.19510 1.18968 1.22254 0.95318 0.92126 1.56156 0.93048 1.19925 0.89285 0.86163 0.92483 1.87958 1.34076 1.13673 1.94984 1.22779 0.95784 0.84691 0.99839 1.22371 0.95235 0.96473 0.92710 1.64819 1.17152 1.40819 1.00593 1.23742 0.96416 1.01330 0.91163 1.22041 0.94131 0.77721 0.82625 1.93005 1.79788 1.52260 1.92752 1.93000 1.95616 1.72680 1.57407 1.23451 0.93718 1.05732 0.94855 1.23180 0.94547 0.92588 0.94640 0.88106 1.22040 0.90856 0.90086 0.95446 1.86550 1.38946 1.53756 1.59899 0.93627 1.00599 0.99959 0.94371 0.92696 0.89623 0.88993 0.90501 0.89783 0.85787 0.87635 0.89774 0.93014 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.57 13.65 21.45 0.29 -58.27 16 2 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16 3 Si 1.13 51.75 29.90 68.60 2.05 53.80 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.62 -38.57 9.43 25.60 0.24 -38.33 16 8 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 9 C 0.20 11.29 5.00 71.24 0.36 11.64 16 10 O -0.39 -19.43 10.27 -148.98 -1.53 -20.96 16 11 C 0.05 1.67 5.81 71.98 0.42 2.09 16 12 C 0.06 1.60 5.21 86.30 0.45 2.05 16 13 N -0.51 -14.62 5.01 -858.28 -4.30 -18.92 16 14 C 0.00 0.08 4.95 86.45 0.43 0.50 16 15 C 0.27 7.24 2.63 31.47 0.08 7.33 16 16 F -0.20 -4.99 17.07 44.97 0.77 -4.22 16 17 F -0.21 -6.58 17.08 44.97 0.77 -5.81 16 18 C -0.14 -2.92 6.02 31.80 0.19 -2.73 16 19 C 0.06 1.14 2.74 45.26 0.12 1.27 16 20 H 0.10 1.43 7.85 -2.39 -0.02 1.41 16 21 C 0.09 1.57 6.96 71.98 0.50 2.08 16 22 O -0.58 -12.90 12.36 -148.98 -1.84 -14.74 16 23 H 0.25 16.20 7.22 -92.71 -0.67 15.53 16 24 H -0.02 -1.40 8.01 -2.39 -0.02 -1.42 16 25 H -0.02 -1.00 8.01 -2.38 -0.02 -1.02 16 26 H 0.04 1.37 6.45 -2.39 -0.02 1.35 16 27 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.09 1.63 7.89 -2.39 -0.02 1.61 16 29 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 30 H 0.08 2.83 8.01 -2.39 -0.02 2.81 16 31 H 0.08 2.19 7.06 -2.39 -0.02 2.17 16 32 H 0.12 1.81 8.12 -2.39 -0.02 1.79 16 33 H 0.11 2.58 6.98 -2.39 -0.02 2.56 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.87 7.50 -2.38 -0.02 0.85 16 36 H 0.39 5.17 9.12 -74.06 -0.68 4.50 16 Total: -1.00 -77.07 304.80 -0.02 -77.10 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.52 Total: 7.41 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 3.26 Total: -15.37 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -4.01 Total: -77.19 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -3.37 Total: -35.70 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 1.54 Total: -10.03 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.05 Total: 53.80 kcal Total: -77.07 -0.02 -77.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590175384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.508 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds