Wall clock time and date at job start Mon Mar 30 2020 05:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35540 * 116.99773 * 2 1 4 4 C 1.39029 * 120.46790 * 179.97438 * 3 2 1 5 5 C 1.39111 * 118.28710 * 180.02562 * 4 3 2 6 6 N 1.39095 * 120.48668 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00271 * 174.92582 * 6 5 4 8 8 O 1.21272 * 119.99400 * 5.07746 * 7 6 5 9 9 C 1.50696 * 120.00482 * 185.08017 * 7 6 5 10 10 C 1.52991 * 109.47287 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47060 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00087 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99725 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00488 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47199 * 89.99944 * 16 14 12 18 18 H 1.48497 * 109.47356 * 209.99925 * 16 14 12 19 19 H 1.48506 * 109.47039 * 329.99985 * 16 14 12 20 20 N 1.33082 * 119.02505 * 0.02562 * 5 4 3 21 21 C 1.31716 * 120.85053 * 359.97438 * 20 5 4 22 22 N 1.31787 * 121.89315 * 0.02562 * 21 20 5 23 23 H 1.08993 * 109.46868 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46863 * 300.00607 * 1 2 3 25 25 H 1.09003 * 109.46841 * 60.00297 * 1 2 3 26 26 H 1.08001 * 120.85885 * 359.75066 * 4 3 2 27 27 H 0.97004 * 120.00437 * 354.92253 * 6 5 4 28 28 H 1.08999 * 109.46718 * 300.00007 * 9 7 6 29 29 H 1.09000 * 109.47343 * 59.99543 * 9 7 6 30 30 H 1.08999 * 109.47180 * 299.99641 * 10 9 7 31 31 H 1.08998 * 109.47618 * 59.99946 * 10 9 7 32 32 H 1.08994 * 109.46913 * 299.99434 * 11 10 9 33 33 H 1.09003 * 109.47305 * 60.00305 * 11 10 9 34 34 H 0.96998 * 120.00077 * 180.02562 * 15 14 12 35 35 H 1.08004 * 119.05478 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4321 1.2918 0.0005 5 6 4.0159 2.5545 0.0011 6 7 5.4001 2.6919 0.0011 7 6 5.9559 3.9155 -0.1017 8 8 5.2520 4.9030 -0.1013 9 6 7.4518 4.0564 -0.2170 10 6 7.8182 5.5383 -0.3186 11 6 9.3370 5.6814 -0.4350 12 6 9.6978 7.1412 -0.5357 13 1 8.9215 7.8917 -0.5188 14 6 11.0190 7.5184 -0.6494 15 7 11.9645 6.6044 -0.6705 16 14 11.4664 9.3278 -0.7735 17 1 11.6847 9.8783 0.5882 18 1 12.7091 9.4768 -1.5727 19 1 10.3610 10.0668 -1.4349 20 7 3.2307 3.6290 0.0016 21 6 1.9192 3.5071 0.0010 22 7 1.3294 2.3286 0.0005 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.0411 0.4000 0.0050 27 1 5.9655 1.9071 0.0751 28 1 7.9263 3.6248 0.6643 29 1 7.7983 3.5341 -1.1087 30 1 7.3436 5.9703 -1.1996 31 1 7.4718 6.0603 0.5734 32 1 9.8112 5.2496 0.4463 33 1 9.6839 5.1595 -1.3269 34 1 12.8940 6.8699 -0.7502 35 1 1.3096 4.3987 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593996486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:06 Heat of formation + Delta-G solvation = -26.060012 kcal Electronic energy + Delta-G solvation = -18774.432533 eV Core-core repulsion = 15580.369941 eV Total energy + Delta-G solvation = -3194.062591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52195 -39.80432 -38.50250 -35.44978 -34.22966 -32.60757 -32.06114 -31.37470 -28.21567 -27.54930 -24.67123 -24.55671 -23.07048 -21.01349 -19.97361 -19.20135 -17.89618 -17.12376 -16.51918 -16.12915 -16.00404 -15.66465 -15.62456 -14.90994 -14.47235 -14.42564 -14.33059 -13.73957 -13.38666 -12.38879 -12.31335 -12.05838 -11.86984 -11.54376 -11.23657 -10.92460 -10.82142 -10.67469 -10.54988 -10.15460 -9.72315 -9.58176 -9.42060 -9.17930 -8.99317 -8.94701 -8.33385 -5.99079 -4.00535 0.74061 1.02484 2.36503 2.77409 2.92224 3.34529 3.40437 3.45266 3.71189 3.87732 4.09742 4.48609 4.67444 4.82034 4.92069 4.94501 5.04120 5.18231 5.25494 5.37209 5.58003 5.60351 5.68450 6.13039 6.26912 6.56920 6.66310 6.81283 6.86787 7.11207 7.22948 7.68233 7.80151 7.97541 8.01130 8.24416 8.44748 9.06478 9.63655 11.12392 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.066886 B = 0.002823 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.521918 B = 9917.487498 C =10296.719879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.303 6.303 3 C 0.380 3.620 4 C -0.291 4.291 5 C 0.437 3.563 6 N -0.660 5.660 7 C 0.501 3.499 8 O -0.459 6.459 9 C -0.135 4.135 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.518 4.518 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 N -0.531 5.531 21 C 0.363 3.637 22 N -0.602 5.602 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.421 0.579 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.260 0.740 35 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.775 -15.548 1.670 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.194 3.806 4 C -0.319 4.319 5 C 0.198 3.802 6 N -0.307 5.307 7 C 0.288 3.712 8 O -0.325 6.325 9 C -0.175 4.175 10 C -0.134 4.134 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 N -0.256 5.256 21 C 0.074 3.926 22 N -0.335 5.335 23 H 0.117 0.883 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.170 0.830 27 H 0.258 0.742 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.401 -14.290 1.632 24.961 hybrid contribution 0.873 -0.227 -0.024 0.902 sum -19.528 -14.517 1.608 24.386 Atomic orbital electron populations 1.22942 0.76567 1.03222 1.02876 1.86217 1.23435 1.24114 1.86971 1.19646 0.88740 0.84988 0.87183 1.21059 0.93444 0.98534 1.18823 1.18476 0.85927 0.88450 0.87313 1.44053 1.02941 1.12026 1.71699 1.21752 0.92205 0.81733 0.75503 1.90805 1.63378 1.36152 1.42158 1.21916 0.88258 1.03202 1.04157 1.21488 1.00102 0.89967 1.01888 1.19131 0.88283 0.97090 0.97149 1.21259 0.92098 0.92532 1.49767 0.92528 1.25019 0.96628 0.97493 0.95384 1.69957 1.00064 1.32779 1.50934 0.86585 0.77875 0.85465 0.78056 1.20666 1.21268 1.19819 1.68560 1.05820 1.31170 1.20010 1.24705 0.87571 0.93711 0.86608 1.68131 1.41636 0.99155 1.24601 0.88343 0.91950 0.91937 0.83047 0.74156 0.88841 0.88796 0.92483 0.92471 0.96525 0.96528 0.93048 0.78062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.41 101.05 1.05 1.31 16 2 O -0.30 -2.98 10.49 -18.31 -0.19 -3.17 16 3 C 0.38 4.29 7.52 -16.77 -0.13 4.16 16 4 C -0.29 -3.11 9.99 -38.96 -0.39 -3.50 16 5 C 0.44 5.65 7.45 -154.35 -1.15 4.50 16 6 N -0.66 -7.75 5.38 -11.33 -0.06 -7.81 16 7 C 0.50 7.76 7.79 -10.99 -0.09 7.68 16 8 O -0.46 -9.01 14.29 5.56 0.08 -8.93 16 9 C -0.14 -2.07 5.70 -27.89 -0.16 -2.23 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 N -0.53 -7.87 8.05 -13.79 -0.11 -7.98 16 21 C 0.36 4.36 12.28 -92.23 -1.13 3.23 16 22 N -0.60 -6.99 9.38 -14.71 -0.14 -7.13 16 23 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.42 3.16 8.72 -40.82 -0.36 2.80 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.20 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 310.89 15.07 4.68 4.68 Total: -1.00 -35.29 310.89 -7.22 -42.52 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.54 Total: -2.73 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.66 Total: -0.22 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.43 Total: -49.04 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.11 Total: -12.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.29 -7.22 -42.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593996486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.455 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds