Wall clock time and date at job start Mon Mar 30 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 116.99507 * 2 1 4 4 C 1.38646 * 120.88460 * 0.24587 * 3 2 1 5 5 N 1.32499 * 119.11780 * 180.28100 * 4 3 2 6 6 C 1.31749 * 121.03385 * 359.73766 * 5 4 3 7 7 N 1.31788 * 121.94062 * 359.97438 * 6 5 4 8 8 C 1.32818 * 120.76801 * 0.02562 * 7 6 5 9 9 N 1.39209 * 120.55212 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99906 * 359.71778 * 9 8 7 11 11 O 1.21273 * 120.00216 * 0.28206 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27763 * 10 9 8 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47353 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47846 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99192 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00564 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46973 * 90.00363 * 19 17 15 21 21 H 1.48497 * 109.46950 * 210.00146 * 19 17 15 22 22 H 1.48504 * 109.47027 * 330.00185 * 19 17 15 23 23 H 1.08996 * 109.47007 * 60.00360 * 1 2 3 24 24 H 1.09001 * 109.46475 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47192 * 299.99858 * 1 2 3 26 26 H 1.08006 * 120.44243 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.02872 * 179.97438 * 6 5 4 28 28 H 0.97001 * 120.00306 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 30 30 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 31 31 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 32 32 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 33 33 H 1.08999 * 109.47616 * 300.00389 * 14 13 12 34 34 H 1.09003 * 109.47280 * 60.00024 * 14 13 12 35 35 H 0.97000 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.3092 2.3860 0.0051 5 7 1.9467 3.5475 -0.0007 6 6 3.2631 3.5998 -0.0061 7 7 4.0041 2.5100 -0.0054 8 6 3.4425 1.3064 0.0003 9 7 4.2295 0.1582 0.0004 10 6 5.5732 0.2623 -0.0110 11 8 6.0967 1.3562 -0.0162 12 6 6.4253 -0.9807 -0.0171 13 6 7.9033 -0.5858 -0.0293 14 6 8.7684 -1.8477 -0.0348 15 6 10.2243 -1.4589 -0.0462 16 1 10.5046 -0.4158 -0.0486 17 6 11.1985 -2.4345 -0.0533 18 7 10.8572 -3.7045 -0.0508 19 14 13.0032 -1.9523 -0.0666 20 1 13.4917 -1.8246 1.3299 21 1 13.7891 -2.9959 -0.7725 22 1 13.1633 -0.6531 -0.7678 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2296 2.3544 0.0096 27 1 3.7493 4.5641 -0.0112 28 1 3.8109 -0.7168 0.0042 29 1 6.2144 -1.5702 0.8751 30 1 6.1994 -1.5717 -0.9048 31 1 8.1146 0.0039 -0.9212 32 1 8.1289 0.0049 0.8587 33 1 8.5571 -2.4371 0.8574 34 1 8.5430 -2.4389 -0.9225 35 1 11.5426 -4.3909 -0.0562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594028304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:44 Heat of formation + Delta-G solvation = -24.625650 kcal Electronic energy + Delta-G solvation = -19065.098590 eV Core-core repulsion = 15871.098198 eV Total energy + Delta-G solvation = -3194.000393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65588 -39.54189 -38.74824 -35.49721 -34.19447 -32.97097 -32.01618 -30.76571 -28.09765 -27.98643 -24.91311 -24.00187 -23.34571 -20.92958 -19.96120 -18.84002 -18.26658 -17.78995 -16.55471 -16.53027 -15.97554 -15.63737 -15.54085 -14.56095 -14.50885 -14.42419 -13.93167 -13.68237 -13.41560 -12.52751 -12.29359 -12.06159 -11.84758 -11.70642 -11.38707 -11.27398 -10.80620 -10.64832 -10.53365 -10.06785 -10.01928 -9.68406 -9.39180 -9.13173 -8.92929 -8.43508 -8.31845 -5.97623 -3.98991 0.73344 0.82752 2.63257 2.67476 2.81503 3.35570 3.41358 3.46357 3.66892 3.89437 4.00227 4.36503 4.38647 4.50432 4.68532 4.74912 5.02079 5.07814 5.22534 5.38671 5.63477 5.64138 5.86667 6.07904 6.17230 6.56118 6.69097 6.76036 6.89436 7.13706 7.28299 7.70218 7.82360 7.96582 8.02789 8.28457 8.46551 9.08034 9.65113 11.13903 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.040539 B = 0.003246 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.534814 B = 8623.704427 C = 9283.160750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C -0.018 4.018 4 C 0.083 3.917 5 N -0.517 5.517 6 C 0.291 3.709 7 N -0.481 5.481 8 C 0.398 3.602 9 N -0.655 5.655 10 C 0.501 3.499 11 O -0.464 6.464 12 C -0.135 4.135 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.170 0.830 27 H 0.202 0.798 28 H 0.424 0.576 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.139 7.055 0.135 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C -0.071 4.071 4 C -0.080 4.080 5 N -0.235 5.235 6 C 0.003 3.997 7 N -0.202 5.202 8 C 0.154 3.846 9 N -0.304 5.304 10 C 0.288 3.712 11 O -0.331 6.331 12 C -0.175 4.175 13 C -0.134 4.134 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.076 0.924 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.187 0.813 27 H 0.218 0.782 28 H 0.262 0.738 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.034 8.267 0.123 24.473 hybrid contribution 0.009 -1.012 0.009 1.012 sum -23.025 7.255 0.132 24.141 Atomic orbital electron populations 1.23136 0.77585 1.04677 1.01527 1.86042 1.21953 1.24830 1.89312 1.20217 0.92215 0.87666 1.07039 1.23108 1.00837 0.86424 0.97668 1.68264 1.11696 1.28044 1.15482 1.24868 0.85719 0.96946 0.92181 1.68579 1.39228 0.96555 1.15845 1.18355 0.84678 0.88256 0.93270 1.43992 1.07255 1.07088 1.72026 1.21734 0.80794 0.93198 0.75476 1.90794 1.71421 1.28555 1.42307 1.21904 0.97473 0.93867 1.04243 1.21487 0.89287 1.00710 1.01941 1.19129 0.93781 0.91529 0.97210 1.21267 0.91297 0.92903 1.50175 0.92527 1.25016 0.99147 0.94978 0.95366 1.69961 1.33252 0.99343 1.51198 0.86587 0.85061 0.78239 0.78106 1.20674 1.21274 1.19805 0.92360 0.87560 0.92367 0.81328 0.78155 0.73846 0.88862 0.88861 0.92480 0.92485 0.96532 0.96517 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.65 9.86 -19.73 -0.19 -2.84 16 3 C -0.02 -0.19 6.75 -38.80 -0.26 -0.45 16 4 C 0.08 0.80 10.30 -17.11 -0.18 0.63 16 5 N -0.52 -5.95 10.43 -14.55 -0.15 -6.11 16 6 C 0.29 3.62 12.28 -92.20 -1.13 2.49 16 7 N -0.48 -7.37 8.04 -13.61 -0.11 -7.48 16 8 C 0.40 5.46 7.48 -154.16 -1.15 4.31 16 9 N -0.65 -8.58 5.39 -11.15 -0.06 -8.64 16 10 C 0.50 8.19 7.79 -10.98 -0.09 8.10 16 11 O -0.46 -9.40 14.28 5.56 0.08 -9.32 16 12 C -0.13 -2.17 5.70 -27.89 -0.16 -2.32 16 13 C -0.10 -2.05 4.44 -26.74 -0.12 -2.16 16 14 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 0.19 7.72 -51.93 -0.40 -0.21 16 24 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.19 7.70 -51.93 -0.40 -0.21 16 26 H 0.17 1.01 6.46 -52.48 -0.34 0.67 16 27 H 0.20 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.42 4.18 8.15 -40.82 -0.33 3.85 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.06 1.26 8.10 -51.92 -0.42 0.84 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -35.62 307.32 -7.12 -42.75 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.39 Total: -2.05 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.64 Total: -1.68 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.42 Total: -48.52 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.12 Total: -12.16 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.62 -7.12 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594028304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.121 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds