Wall clock time and date at job start Mon Mar 30 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 116.99507 * 2 1 4 4 C 1.38646 * 120.88460 * 0.24587 * 3 2 1 5 5 N 1.32499 * 119.11780 * 180.28100 * 4 3 2 6 6 C 1.31749 * 121.03385 * 359.73766 * 5 4 3 7 7 N 1.31788 * 121.94062 * 359.97438 * 6 5 4 8 8 C 1.32818 * 120.76801 * 0.02562 * 7 6 5 9 9 N 1.39209 * 120.55212 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99906 * 359.71778 * 9 8 7 11 11 O 1.21273 * 120.00216 * 0.28206 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27763 * 10 9 8 13 13 C 1.52990 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47353 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47846 * 180.02562 * 14 13 12 16 16 H 1.08010 * 119.99192 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00564 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46973 * 90.00363 * 19 17 15 21 21 H 1.48497 * 109.46950 * 210.00146 * 19 17 15 22 22 H 1.48504 * 109.47027 * 330.00185 * 19 17 15 23 23 H 1.08996 * 109.47007 * 60.00360 * 1 2 3 24 24 H 1.09001 * 109.46475 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47192 * 299.99858 * 1 2 3 26 26 H 1.08006 * 120.44243 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.02872 * 179.97438 * 6 5 4 28 28 H 0.97001 * 120.00306 * 180.02562 * 9 8 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 30 30 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 31 31 H 1.08998 * 109.47508 * 300.00200 * 13 12 10 32 32 H 1.09011 * 109.47182 * 60.00188 * 13 12 10 33 33 H 1.08999 * 109.47616 * 300.00389 * 14 13 12 34 34 H 1.09003 * 109.47280 * 60.00024 * 14 13 12 35 35 H 0.97000 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.3092 2.3860 0.0051 5 7 1.9467 3.5475 -0.0007 6 6 3.2631 3.5998 -0.0061 7 7 4.0041 2.5100 -0.0054 8 6 3.4425 1.3064 0.0003 9 7 4.2295 0.1582 0.0004 10 6 5.5732 0.2623 -0.0110 11 8 6.0967 1.3562 -0.0162 12 6 6.4253 -0.9807 -0.0171 13 6 7.9033 -0.5858 -0.0293 14 6 8.7684 -1.8477 -0.0348 15 6 10.2243 -1.4589 -0.0462 16 1 10.5046 -0.4158 -0.0486 17 6 11.1985 -2.4345 -0.0533 18 7 10.8572 -3.7045 -0.0508 19 14 13.0032 -1.9523 -0.0666 20 1 13.4917 -1.8246 1.3299 21 1 13.7891 -2.9959 -0.7725 22 1 13.1633 -0.6531 -0.7678 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2296 2.3544 0.0096 27 1 3.7493 4.5641 -0.0112 28 1 3.8109 -0.7168 0.0042 29 1 6.2144 -1.5702 0.8751 30 1 6.1994 -1.5717 -0.9048 31 1 8.1146 0.0039 -0.9212 32 1 8.1289 0.0049 0.8587 33 1 8.5571 -2.4371 0.8574 34 1 8.5430 -2.4389 -0.9225 35 1 11.5426 -4.3909 -0.0562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594028304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:44 Heat of formation + Delta-G solvation = -48.849007 kcal Electronic energy + Delta-G solvation = -19066.148994 eV Core-core repulsion = 15871.098198 eV Total energy + Delta-G solvation = -3195.050796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.55390 -40.72302 -39.45930 -36.67049 -36.02263 -34.19100 -33.73479 -31.69234 -29.73484 -28.57546 -26.41214 -24.86582 -24.75200 -22.43435 -21.43293 -19.81144 -19.02541 -18.77223 -18.42458 -17.39365 -17.34636 -16.69373 -16.49683 -16.45986 -15.53815 -15.31261 -14.98273 -14.86942 -14.64748 -14.27460 -13.77447 -13.23120 -13.03075 -12.79219 -12.58186 -12.53514 -12.41759 -12.36863 -12.16625 -11.55614 -11.48334 -11.30058 -11.09554 -10.97925 -10.53277 -10.04488 -9.29550 -8.19691 -6.29209 -0.17122 -0.04057 1.40267 1.41131 1.52663 1.60153 1.64687 2.00978 2.42233 2.75668 3.04464 3.13557 3.22127 3.44383 3.68049 3.92586 4.20811 4.25132 4.38097 4.43693 4.46984 4.76950 4.81211 4.95724 4.97353 5.09017 5.19044 5.25583 5.54877 5.62630 5.76429 5.87977 6.05236 6.27532 6.32168 6.86187 6.96544 7.20723 7.39371 8.91809 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.040539 B = 0.003246 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.534814 B = 8623.704427 C = 9283.160750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C -0.001 4.001 4 C 0.088 3.912 5 N -0.519 5.519 6 C 0.278 3.722 7 N -0.520 5.520 8 C 0.363 3.637 9 N -0.642 5.642 10 C 0.507 3.493 11 O -0.512 6.512 12 C -0.125 4.125 13 C -0.083 4.083 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.269 1.269 23 H 0.072 0.928 24 H 0.126 0.874 25 H 0.073 0.927 26 H 0.210 0.790 27 H 0.218 0.782 28 H 0.438 0.562 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.000 6.941 0.155 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.228 6.228 3 C -0.055 4.055 4 C -0.076 4.076 5 N -0.236 5.236 6 C -0.010 4.010 7 N -0.242 5.242 8 C 0.121 3.879 9 N -0.292 5.292 10 C 0.295 3.705 11 O -0.383 6.383 12 C -0.164 4.164 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.193 1.193 23 H 0.091 0.909 24 H 0.144 0.856 25 H 0.091 0.909 26 H 0.227 0.773 27 H 0.234 0.766 28 H 0.279 0.721 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.953 8.133 0.146 26.245 hybrid contribution 0.400 -1.014 0.003 1.090 sum -24.553 7.119 0.148 25.565 Atomic orbital electron populations 1.23533 0.75068 1.06572 1.02944 1.86054 1.24418 1.23619 1.88735 1.20113 0.91100 0.88907 1.05337 1.23769 1.02497 0.85399 0.95961 1.68338 1.11229 1.28968 1.15071 1.25200 0.86218 0.97025 0.92564 1.68490 1.41038 0.97783 1.16861 1.18570 0.86086 0.87893 0.95347 1.43626 1.06115 1.08021 1.71394 1.21574 0.81865 0.92267 0.74758 1.90779 1.72569 1.29974 1.44937 1.21719 0.93932 0.94296 1.06477 1.21184 0.92340 0.98110 1.00520 1.19014 0.93409 0.92935 0.95742 1.21698 0.93334 0.92877 1.50647 0.93094 1.25883 1.03904 0.94913 0.94734 1.70061 1.34906 1.00299 1.51636 0.85518 0.79317 0.78141 0.78517 1.19754 1.20315 1.19327 0.90902 0.85614 0.90882 0.77349 0.76577 0.72108 0.86610 0.86610 0.93938 0.93919 0.97846 0.97837 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.84 113.37 1.12 1.18 16 2 O -0.32 -4.51 9.86 -93.50 -0.92 -5.43 16 3 C 0.00 -0.02 6.75 22.78 0.15 0.14 16 4 C 0.09 1.46 10.30 84.69 0.87 2.33 16 5 N -0.52 -11.11 10.43 -199.93 -2.08 -13.20 16 6 C 0.28 6.84 12.28 180.90 2.22 9.06 16 7 N -0.52 -16.11 8.04 -196.96 -1.58 -17.69 16 8 C 0.36 9.75 7.48 133.06 1.00 10.74 16 9 N -0.64 -16.37 5.39 -307.59 -1.66 -18.03 16 10 C 0.51 16.64 7.79 87.66 0.68 17.33 16 11 O -0.51 -21.37 14.28 -3.01 -0.04 -21.42 16 12 C -0.12 -3.94 5.70 29.85 0.17 -3.77 16 13 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16 14 C 0.03 1.37 4.97 29.85 0.15 1.52 16 15 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.28 13.29 21.44 0.28 -55.99 16 19 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H 0.07 0.19 7.72 -2.39 -0.02 0.17 16 24 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.07 0.18 7.70 -2.39 -0.02 0.16 16 26 H 0.21 1.59 6.46 -2.91 -0.02 1.57 16 27 H 0.22 4.16 8.06 -2.91 -0.02 4.13 16 28 H 0.44 7.99 8.15 -92.71 -0.76 7.24 16 29 H 0.12 3.15 8.14 -2.39 -0.02 3.14 16 30 H 0.12 3.15 8.14 -2.39 -0.02 3.14 16 31 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.04 1.95 8.10 -2.38 -0.02 1.93 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -78.52 307.32 3.57 -74.95 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.36 Total: 5.73 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 7.19 Total: 3.72 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -5.04 Total: -104.91 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.97 Total: -26.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -78.52 3.57 -74.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594028304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.098 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds